Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq11176 798 0.0 seq11405 297 7e-76 seq7642 251 2e-62 seq14366 163 1e-35 seq11894 105 2e-18 seq11041 86.0 2e-12 seq10795 82.4 3e-11 >seq11176 Length=58678 Score = 798 bits (884), Expect = 0.0 Identities = 985/1330 (74%), Gaps = 19/1330 (1%) Strand=Plus/Plus Query 33316 TGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGCGG 33375 |||||| | ||||||||||||||||| ||||||||||||| | || ||| | | Sbjct 33427 TGAACCACCCCGGGAATCGTGGAGGCCGGTTGGTTTAAGTCAG-GCCACCACCATGGAGA 33485 Query 33376 CATTTCTG---AGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGA 33432 | | ||| ||||| | |||||||||||||||||| || |||| |||||| ||||||| Sbjct 33486 CCTGACTGGCGAGTTGCCGGTAGTAGTTTGCCTCAGCCTCGGCGGACGGGATGTAGCCGA 33545 Query 33433 GCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGA 33492 ||||| | |||||| || |||||| |||| | |||||||| || || |||| || | Sbjct 33546 TGGGTTCGAGCAGCCGGTGGTGGTTGAACCATGACACCCATTCGAGGGTGGCCAACTCCA 33605 Query 33493 CGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGT 33552 | |||||| | || ||||| | || || || || |||| ||| | ||||||||| |||| Sbjct 33606 CCGATTCCTT-GTCTTCCACGTTGCTCGTCGGTGGATCAATTCGGCCTTGTACAGCCCGT 33664 Query 33553 TGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGA 33612 ||||||| ||||||||||| ||||| ||||||| |||| |||||| || ||||| |||| Sbjct 33665 TGATCGTCTCGGCCAGCGCGTTGTCATAGCTGTTGCCCTTGCTGCCCACAGAGGGTTCGA 33724 Query 33613 TGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGG 33672 | |||||||| ||||| | || ||||||| || ||||| ||||| | ||||||||||| Sbjct 33725 TACCGGCCTCGGCCAGTCACTCTGTGTAGCGGATACTGACATATTGCG-CCCCCTGTCGG 33783 Query 33673 AATGATGAATCAAAGTCCCGTCCTCGCCC-GGTTGGCGGGCGTACAGCGCTTGTTCAAGT 33731 | ||| | ||| ||||| ||| | || | ||| ||||||||||| || || || Sbjct 33784 AGTGACAGACCAAGCCGCCGTCG-CGCTCAGGCTTGCGTGCGTACAGCGCCTGCTCCAGC 33842 Query 33732 GCATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGG 33791 | || || || |||||||| |||||| ||| ||||||||||| ||| | || ||| Sbjct 33843 GTATTGAGCACGAAGTCCGTACGCATCGAACTGCTCACCCGCCAGCCCACA-TGCGCCGG 33901 Query 33792 GCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTA 33851 ||| || |||||||||| || ||||||||||||||||||||||| || || || || || Sbjct 33902 GCGCACGCGTCGATCACAAAGGCCACGTACAGCCAGCCTTGCCAGGTTGAAACGTAGGTG 33961 Query 33852 AAATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGTCC 33911 || ||||| |||| ||||| || || || || || ||||| ||||||||||| |||||| Sbjct 33962 AAGTCCGAGACCCTCAGCTGGTTGGGCCGCTCGGCTTTGAATTGCCGGTTGACCCGGTCC 34021 Query 33912 AGCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGAACTGCG 33971 ||||||| ||| || | ||| | || || ||||| | ||| || || || Sbjct 34022 AGCGGGCACGGTGCCCGAGCGTCGCTGATGGTGGTGCGCTCCACCTTGCCACGGCGCACG 34081 Query 33972 CCACGCAAGCCCTGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCT 34031 || ||||||| | || ||||| ||| |||| |||||||| || | || |||||| Sbjct 34082 CCCTGCAAGCCAAGGCGCCGCATCAGCCGCTCGACTGTGCAGCGGGCAATGGTGATGCCT 34141 Query 34032 TCCCGGTTCATCTGCTTCCAGACCT--TCGGCACGCCGTAGACCTGCATGTTGGCCTGCC 34089 || ||||| | ||| ||||||||| |||| |||||||||||||||||||||| |||| Sbjct 34142 TCGCGGTTGAGCTGTCTCCAGACCTTGTCGG--CGCCGTAGACCTGCATGTTGGCGTGCC 34199 Query 34090 AGACACGCTTGATCTCCGGTTGCAAAAGCTCATCGCGTTTCGCGCGGGCGCAGCGTTTCG 34149 | || || | || | ||| || | || || |||| ||||| | |||||| | Sbjct 34200 ACACGCGTTCCATGTGCGGCACCAGATTGTCGTCACGTTGGGCGCGCGTGCAGCGCAGCT 34259 Query 34150 ACGGATCGCGAAGTTGTGCTGCATGGCGTCGGTAGCCCGACGGGGCAATCCGCAAGACCT 34209 ||| |||| | || || |||||||| | ||||| ||| |||| ||| ||| || | Sbjct 34260 GAGGACCGCGCTGATGAGCAGCATGGCGCCAATAGCCTGACAGGGCGATCTTCAACACTT 34319 Query 34210 TGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTT 34269 ||| |||| |||||||||| ||| | ||| ||||||| | || ||||||||| Sbjct 34320 CGCAAATCGACTCGACCCCGTAGGCCTGTCGACGCTGATCGACAAACTTGTTCAGGACTG 34379 Query 34270 GAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGCGCTCGCCAGTTTGAGAA--TCTCG 34327 | |||||||||||| |||||||| ||||||| |||||| ||||| ||||| | |||| Sbjct 34380 CAGACGGCGGTCGAGTTCCGCCTGGGCGAAAAGCGCGCTGGCCAGCTTGAGGATCTCTCA 34439 Query 34328 TTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCTTTGATGCGTTCACGCTCGGCC 34387 |||| | ||| || |||||||||| ||||| || || || ||| |||||||| Sbjct 34440 TTGGCTTTGTGCACCTCTTTGACCTCGCACTCCAGCGCCTTCATCTGTTTACGCTCGGAT 34499 Query 34388 GTACTCACGCCATCGCGCTCTCCACGGTCGACCTCGTTGCGCTTAACCCAATCCAACAGC 34447 || | | ||| |||||||| | |||| || || ||||| ||| | || || Sbjct 34500 GTCGTGATGCCGTCGCGCTCGCTGGAATCGATCTGGTCTCGCTTGACCTATTCGTTGAGG 34559 Query 34448 GTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGATTCGACGGCCGCCCACATCGACGGG 34507 ||||| || ||||| |||||| || || || ||||||| ||| ||||||||| | ||| Sbjct 34560 GTCTGGGGAACGCAGCAGATCATGGGGGCGATGGATTCGATGGCGGCCCACATCAAGGGG 34619 Query 34508 TGCTCGCTACGCTGCTCGCGTACCAGGCGCACTGCGCGCTCTCGGACTTCCGGGGAAAAC 34567 | ||||| || |||||||| |||| ||| || || | ||||| || || || ||||| Sbjct 34620 TACTCGCCTCGGTGCTCGCGCACCAAGCGAACGGCTTGTTCTCGCACCTCGGGTGAAAAT 34679 Query 34568 TGCTT-GGCTTC-TGTTCATGGCTCCATTCTCTCAGAG-TTGGAGCCTCCAC-AAACTCG 34623 || || | ||| || ||||||||| || ||||||| | ||||||| | |||| || Sbjct 34680 TGGTTCGAATTCTTGCTCATGGCTCTATCCTCTCAGGGAAAAGAGCCTCTTCAAAACCCG 34739 Query 34624 GGGCGGTTCA 34633 |||||||||| Sbjct 34740 GGGCGGTTCA 34749 >seq11405 Length=110570 Score = 297 bits (328), Expect = 7e-76 Identities = 551/797 (69%), Gaps = 74/797 (9%) Strand=Plus/Plus Query 31340 CCACTCGCCCCATTGCTTGAATAGGAACGGCACGCCGGCGGCTGCGCACTGGTCGCGCAG 31399 |||||||||||| |||||||| | ||| | | ||| |||| |||||||||||||||| Sbjct 75263 CCACTCGCCCCACTGCTTGAACATGAAGGCCGTGCCCACGGCCTCGCACTGGTCGCGCAG 75322 Query 31400 CGAGCGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCCGGCGAT 31459 | | ||||||||||||||||| || || || ||| ||||||| ||||||||| |||| Sbjct 75323 GCTGAGCGCCCAGTCGGGATGCATGGGACGCGCACCGGGGCCGCTCTCGCCGCCGACGAT 75382 Query 31460 CACCCAATGTAGGCCGCCGTCGGCTGGCCGGCGTAGTTCGAGCTGGCGCTTGCCGCCGTG 31519 |||||| | || | || || | | | |||| ||||| | || Sbjct 75383 CACCCAGTCCAGTTC--------CT--CCAGAGCA-TTCG----------TGCCGTC-TG 75420 Query 31520 CGTACGAAAATTGCCGGTGGGCTCGCTGTAGATG--TGGAAGCGAAGGTCAACCGGCCCG 31577 || | |||| || || | || | | | | | || ||| || ||||| Sbjct 75421 CG-----ATGTTGCTGG--GGTTGGC-GAACAAGCCTTCAAACGAC-----ACAGGCCCC 75467 Query 31578 AGCAAAGGCTCCATCGACAGGAAGCGCACGCGAGCGGGCACTGCG-AGCAGCTTCGGAAT 31636 |||| ||||||||||||| |||||||||| ||||| | |||| |||||||| |||| Sbjct 75468 AGCAGGGGCTCCATCGACAAGAAGCGCACGGACGCGGGGA-TGCGGAGCAGCTTGAGAAT 75526 Query 31637 GTCGCGGTCGGCCTCGGCCTGATTCACGATCGTCGCGCCGAGCCAGACATGCGGCCACGG 31696 ||| ||||||||||||||||| || || | |||||| || | |||||| | || ||| Sbjct 75527 GTCCCGGTCGGCCTCGGCCTGGTTGACAACCGTCGCACCCAACCAGACGTTCGCGGGCGG 75586 Query 31697 CCACTCACGCTCATCGCGCATGATGCTGCCGAGGACGCTGGAAATCATATCCCGCGCGTT 31756 | | ||| | | || ||| || | ||| | | |||||| Sbjct 75587 GC---------CGTCGAGGAACATTTCGCCTAGCA---TGGCA---------CCCGCGTT 75625 Query 31757 TCCGATTCGCTTCGTCAGTAGCAGCCAGTCGAGATTTGGCGTGTTGCTGATCAAATCGAA 31816 || || | || || || || |||||||| || | | |||| ||||| | Sbjct 75626 CCCAATCCTTTTGGTGAGGAGGAGCCAGTCAAGGTCCGCGGTGTCCAGGATCAGGGCTGC 75685 Query 31817 GAGATCGACTCGCCA--CATCGGATAGACCGCGTTGTCGAACACGTCCGCAAGCGACGAG 31874 || || | ||||| || ||| | ||| ||||| ||||| ||||| || || || | Sbjct 75686 CAGGTCATCGCGCCATTCA-CGGCT-GACTGCGTTATCGAAAACGTCAGCGAGGCTCGCG 75743 Query 31875 CAAAAGACGCGCTGGCGCCGGCCGCGGGCGGCGAAGAACTGTTCGTGCGCTGCGTTCCAC 31934 || || ||||||||||| |||||| | ||| ||| ||| | |||||||| Sbjct 75744 CAGAACACGCGCTGGCGGCGGCCGTGCTGGGCCTGGAATGCCTCGGCCTGGGCGTTCCA- 75802 Query 31935 GCG-AGCGGCTTGCGCCAGTTTGCGGCTGAC----GTGCGACGCCGCGGTGCGCCCGGTC 31989 ||| || ||| | |||||| |||||| ||||| || || |||||||| || | Sbjct 75803 GCGCAGGGGCAGGTTCCAGTT----GCTGACACTGGTGCGGCGGCGGGGTGCGCCTGGGC 75858 Query 31990 CCCAGTTCACGGCCGAGCCGCCAGCGAAGCGTGCATTGCGCGCCTCGGCGTAACAGTGGT 32049 ||||||| | ||| |||||| |||||||| |||||||| |||||| || ||||||| Sbjct 75859 CCCAGTTGATCGCCTGGCCGCCGGCGAAGCGGGCATTGCGGTTCTCGGCATAGCAGTGGT 75918 Query 32050 CGCATCCCGGACCGACCTTCTGGCAACCTTCCCACGGGTTGAACGTGTGGTCGCACCATT 32109 | || ||||| || ||||||||||| |||||||| |||||||||||||||||| ||||| Sbjct 75919 CACAGCCCGGGCCCACCTTCTGGCAGCCTTCCCAGGGGTTGAACGTGTGGTCGGTCCATT 75978 Query 32110 CGATTTTGCTGTTCTCG 32126 |||| |||||||||||| Sbjct 75979 CGATCTTGCTGTTCTCG 75995 >seq7642 Length=832695 Score = 251 bits (278), Expect = 2e-62 Identities = 562/820 (69%), Gaps = 33/820 (4%) Strand=Plus/Plus Query 33833 CCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGT--CGGTCAGCCTTG 33890 ||| |||| | | || || || || || ||||||||| | ||| ||| || | | Sbjct 801192 CCAGGTCGCGCCGTAGGTGAAGTCGGAGACCCAGAGCATGTGCGGCGCCGGG--GCATGG 801249 Query 33891 AACTGCCGGTTGACTCGGTCCAGCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGA 33950 || || |||||||| | || || |||| || |||| | ||| | | ||||||||| Sbjct 801250 AATTGGCGGTTGACCTGATCGAGAGGGCAAGGTGCGGCCTTGTCGCTCACCGTCGTGCGG 801309 Query 33951 ACACGCTTACCGCGAACTGCGCCACGCAAG-CCCTGCAGCTTCATCAACCGTCCGACCGT 34009 | |||| ||||||| ||| | |||| ||| | | |||||| || | || || Sbjct 801310 AGCGGCTTGCCGCGAATGATGCC-CTCAAGGCCCATGACCCTCATCAGGCGGGCAACGGT 801368 Query 34010 GCAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGACCTTCGGCACGCCGTA 34069 ||||| || || | ||| || || || || | ||||||||| | |||||||| Sbjct 801369 ACAGCGGGCGACATCGAAGCCCTCGCGCCGCAACTACCGCCAGACCTTGCGAACGCCGTA 801428 Query 34070 GACCTGCATGTTGGCCTGCCAGACACGCTT--GATCTCCGGTTGCAAAAGCTCATCGCGT 34127 ||| | | ||| |||| | |||||| | || ||| | |||| |||||| || Sbjct 801429 GACGCGGAAGTTCGCCT--CGAACACGCGTCGGACCTCATCCTTCAAAGCCTCATCCCGC 801486 Query 34128 TTCGCGCGGGCGCAGCGTTTCGACGGATCG-CGAAGTTGTGCTGCATGG-CGTCGGTAGC 34185 ||||| || || | | || |||||| || ||| || |||| ||| ||||| Sbjct 801487 TTCGCCCGAGCCGATAGCCCAGAGGGATCGACGCGCTTG-GCGATATGGTCGT-GGTAGG 801544 Query 34186 CCGACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGCT 34245 |||||| || || |||| ||||||||||||||||||||||| | ||||| || | Sbjct 801545 TCGACGGAGCGATTTGCAACACCTTGCAGATCGGCTCGACCCCATGCGCCTCGCGGTGAT 801604 Query 34246 GATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGC 34305 |||||||| || ||| || ||| |||||||||||||||||||| || ||| ||| Sbjct 801605 CGTCAATGAACGCGATCATCGCTCGAACCGGCGGTCGAGCTCCGCCTGGGCAAAATGCGC 801664 Query 34306 GCTCGCCAGTTTG---AGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAA 34362 ||||||| ||| || ||||||||| | | || || || | |||||||||||| Sbjct 801665 GCTCGCC---TTGCGCAGGATCTCGTTGTCCTGCCGAAGCTCGCGGTTCTCGCGCTCCAA 801721 Query 34363 GGCTTTGATGCGTTCACG-CTCGGCCGTACTCACGCCATCGCGCTCTCCACGGTCGACCT 34421 || || | || | || | | ||||| ||| || | ||| | | |||||| || Sbjct 801722 AGCCTTCA-GCTTCGTCGCCACATCCGTAGGCACACCGGCACGCACAC--CGGTCGCGCT 801778 Query 34422 CGTTGCGCTTAACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGCGCAATCG 34481 || ||| ||||| || ||||||||||| ||||||||||||| | | || || | Sbjct 801779 CGGCCTTCTTCACCCACTCATGCAGCGTCTGCGCCGTGCAGCCGATCTTGGCGGCGATTG 801838 Query 34482 ATTCGACGGCCGCCCACATCGACGGGTGCTCG-CTACGCTGCTCGCGTACCAGGCGCACT 34540 | || ||||||||| ||| | |||||| || || || || | ||||| || || Sbjct 801839 ACGAAACCGCCGCCCACCGCGAGGCATGCTCGCCTTCG-TGATCTAGAACCAGCCGAACC 801897 Query 34541 GCGCGCTCTCGGACTTCCGGGGAAAACTGCTTGG----CTT-CTGTTCATGGCTCCATTC 34595 | ||| |||||| || || || |||| |||| ||| || ||||||||||| Sbjct 801898 GTGCGGGTTCGGACCTCGGGAGAGAACTTGTTGGTCGTCTTGCTTGTCATGGCTCCACCT 801957 Query 34596 TCTCA-GAGTTGGAGCCTCC-ACAAACTCGGGGCGGTTCA 34633 ||||| |||||| ||||||| ||||| ||| |||||||| Sbjct 801958 TCTCAGGAGTTGAAGCCTCCGGCAAACCCGGCGCGGTTCA 801997 Score = 206 bits (228), Expect = 9e-49 Identities = 271/371 (73%), Gaps = 12/371 (3%) Strand=Plus/Plus Query 33313 GACTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAG 33372 ||||||||||| |||| | ||||| || || |||| ||||| || | || | | | Sbjct 800757 GACTGAACCGCCCCGGTTTTGTCGGAGGTTGTTTCGTTTGAGTTAC-GCCGCCATGGCTG 800815 Query 33373 CGGCATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGA 33432 || ||| | || | |||| | | |||| |||| || |||||||| | || || Sbjct 800816 --GCTCTTCCGGCCTGGCA-TAGTGGCGTCCCTCGGCTTTGGCCGGCGGGATGTTGCGGA 800872 Query 33433 GCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGA 33492 || |||| |||||| ||| |||| ||||| | ||||||||||||||||| | |||| Sbjct 800873 TGGGCTCCAGCAGCCGGCGATTGTTGAACCAGTCTACCCATTCCAGCGTTGCGAACTCGA 800932 Query 33493 CGGATTCCCTCGTTTT----CCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGG 33548 ||| ||||| | ||| || |||| || || |||| || | |||||| || Sbjct 800933 CGG----CCTCGAATGAGCGCCATGGCCCGCGTCGGTGGATCACCTCGGCCTTGTAGAGA 800988 Query 33549 CCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGC 33608 |||||||| |||||||| || |||||||||||||||||||| |||||| || |||||| Sbjct 800989 CCGTTGATGGTTTCGGCGAGAGCATTGTCGTAGCTGTCGCCGACGCTGCCCACAGAGGGC 801048 Query 33609 TCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTG 33668 |||| ||| ||||| ||||| || ||| |||| |||||||||| |||||| || || Sbjct 801049 TCGACGCCAGCCTCCGCCAGGCGCTCGGTGTATCGAATGCTGATGTATTGGCTGCCTCTA 801108 Query 33669 TCGGAATGATG 33679 ||| |||||| Sbjct 801109 TCGCTATGATG 801119 Score = 91.5 bits (100), Expect = 5e-14 Identities = 222/326 (68%), Gaps = 13/326 (4%) Strand=Plus/Plus Query 34319 AGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCTTTGA--TGCGTT 34376 || ||||||||| | | || ||||| | |||||||||||| || |||| | ||| Sbjct 807385 AGGATCTCGTTGACCTGACGGAGTTCGCGGTTCTCGCGCTCCAAAGCCTTGAGTTTCGT- 807443 Query 34377 CACGCTCGGCCGTACTCACGCCATCGCGCTCTCCACGGTCGACCTCGTTGCGCTTAACCC 34436 | | | | |||| |||||| | || | | || ||| |||| ||| |||| Sbjct 807444 CGC-CACATCCGTCAGCACGCCGACTCGAACGCGACTTTCGCGCTCGGCCTTCTTCACCC 807502 Query 34437 AATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGATTCGACGGCCGCCC 34496 | || |||||| ||| ||||||||||| | | | ||| |||||| | | ||||||| Sbjct 807503 ACTCATGCAGCGTTTGCACCGTGCAGCCGACCTTGGCCGCGATCGATGAGGCCGCCGCCC 807562 Query 34497 ACATCGACGGGTGCTCG-CTACGCTGCTCGCGTACCAGGCGCACTGCGCGCTCTCGGACT 34555 | | | | ||||| | || || || || | ||| || || ||||| | || || Sbjct 807563 ATCGCAAGGTGTGCTTGCCTTCG-TGATCCAGCGCCATCCGAACCGCGCGGTTGCGAACC 807621 Query 34556 TCCGGGGAAAACTGCTTGG----CTT-CTGTTCATGGCTCCATTCTCTCA-GAGTTGGAG 34609 || ||||| || | |||| ||| || ||||||||| | ||||| ||||||||| Sbjct 807622 TCGGGGGAGAATTTGTTGGTCGTCTTGCTTGTCATGGCTCAACCTTCTCAGGAGTTGGAG 807681 Query 34610 CCTCC-ACAAACTCGGGGCGGTTCAG 34634 ||||| | ||| ||| ||||||||| Sbjct 807682 CCTCCGATCAACCCGGCGCGGTTCAG 807707 >seq14366 Length=84928 Score = 163 bits (180), Expect = 1e-35 Identities = 250/353 (71%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 33312 GGACTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCA 33371 || ||||||||||||||| | |||||| ||||||| ||||| ||||| || | | Sbjct 53740 GGTCTGAACCGCACCGGGTTTGCCGGAGGCCATTTGGTTTGAGTTA-TGCGGCCATGGCT 53682 Query 33372 GCGGCATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCG 33431 | | | | || | ||||||| | ||||| || || ||||| || | |||| Sbjct 53681 GGTTCGTCCAGCA--TGGC-GTAGTAGCGCTCTTCAGCCTCGGCTGGCGGTATGTTGCCG 53625 Query 33432 AGCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCG 33491 | || |||| | || | ||||| ||||| |||||||||| ||||| || | || Sbjct 53624 ATAGGCTCCAGAAAGCGTCGGTGGTTAAACCAGTCGACCCATTCGAGCGTGGCGAACTCA 53565 Query 33492 ACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCG 33551 |||| ||| | ||| || | || ||||| || | || | |||||| || ||| Sbjct 53564 ACGGCTTCGAAGCTGCGCCACGGTCCTCGGCGATGGATGACCTCGGCCTTGTAAAGACCG 53505 Query 33552 TTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCG 33611 ||||||||||| || || |||||||| || |||||||| ||| ||||| || |||||| Sbjct 53504 TTGATCGTTTCAGCGAGAGCATTGTCATAACTGTCGCCGACGCTTCCGACAGACGGCTCG 53445 Query 33612 ATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCC 33664 ||||| ||||| ||||||||||| ||||||||| || ||||| || || Sbjct 53444 ATGCCCGCCTCTGCCAGCCGTTCAGAATAGCGAATGGACACATATTGCGAGCC 53392 >seq11894 Length=11267 Score = 105 bits (116), Expect = 2e-18 Identities = 199/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 33789 CGGGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATAC 33848 ||||| || | ||||||||||| |||||||| | |||| ||||| |||| |||||| Sbjct 2 CGGGCAAAGGCATCGATCACGAAGGCCACGTAAACGAAGCCCTGCCAGGTCGCGACATAG 61 Query 33849 GTAAAATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGG 33908 || ||||| || | ||| ||| ||||| | ||||||||| || || ||||| ||| Sbjct 62 GTGAAATCGGATAACCACAGCATGTTCGGCGCGGGAGCCTTGAAGTGGCGATTGACGCGG 121 Query 33909 TCCAGCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGAACT 33968 || ||||| | ||| || | | || | | || || | |||| || |||| Sbjct 122 TCGAGCGGACACGGGGCAGACTTGTCCGATACAGTGGTTTTGATCGGCTTGCCACGAATG 181 Query 33969 GCGCCACGCAAGCCCTGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGTAATG 34028 ||| | | ||| || |||| | || | |||| |||||||| || | | | Sbjct 182 ATGCCTTGAAGACCCATCATTCTCATGAGCCTTGCGACGGTGCAGCGAGCGATATCGAAG 241 Query 34029 CCTTCCCGGTTCATCTGCTTCCAGACCTTCGGCACGCCGTAGACCTGCATGTT 34081 ||||| || | || ||| ||| || ||| ||||||| |||||||| | ||| Sbjct 242 CCTTCTCGCTGCAACTGTCGCCACACTTTCCGCACGCCATAGACCTGGAAGTT 294 Score = 82.4 bits (90), Expect = 3e-11 Identities = 223/329 (68%), Gaps = 23/329 (7%) Strand=Plus/Plus Query 34321 AATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCTTTGATGCGTTCACG 34380 ||||||||||| | | || || || | ||| ||||||| || || || ||| Sbjct 1680 AATCTCGTTGGCCTGACGAAGCTCGCGGTTCTCCCGCTCCAGAGCCTTCATC--TTC--- 1734 Query 34381 CTCGGC--CGT-ACTC---ACGCCATCGCGCTCTCCACGGTCGACCTCGTTGCGCTTAAC 34434 ||||| ||| |||| | |||| | |||| || | ||| ||||| ||| || Sbjct 1735 -TCGGCGACGTCACTCGGCAGGCCAGCTCGCTTGCCGCTGTCCACCTCAGCCTTCTTCAC 1793 Query 34435 CCAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGATTCGACGGCCGC 34494 ||| || ||||| |||| || |||||||||| | | || || || |||||||| Sbjct 1794 CCATTCATTGAGCGTATGCGCCGAGCAGCCGATCTTGGCAGCTATGGAAGACACGGCCGC 1853 Query 34495 CCACATCGACGGGTGCTC-GCTACGCTGCTCGCGTACCAGGCGCACTGCGCGCTCTCGGA 34553 |||| ||| || ||||| ||| | |||||| |||| || || ||||| | || | Sbjct 1854 CCACCGCGAAGGATGCTCTGCTTC-ATGCTCGACAACCATTCGAACGGCGCGGGCGCGCA 1912 Query 34554 CTTCCGGGGAAAACTGCTT----GGCTT-CTGTTCATGGCTCC--ATTCTCTCAGAGTTG 34606 |||| || ||||||| || | ||| || |||| | || ||||| || ||||| Sbjct 1913 CTTCGGGAGAAAACTTGTTCGTCGTCTTGCTTGTCATAGACCCTACTTCTCACA-AGTTG 1971 Query 34607 GAGCCTCC-ACAAACTCGGGGCGGTTCAG 34634 | | |||| ||||| ||| ||||||||| Sbjct 1972 GGGTCTCCGGCAAACCCGGTGCGGTTCAG 2000 >seq11041 Length=50943 Score = 86.0 bits (94), Expect = 2e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 44426 GCCGGGCGACGTCGTGTTCGATCCGTTCTTCGGCAGCGGCACGACCGGACAAGTAGCGCA 44485 |||||||||||||||| |||| |||||||||||| |||||| || || | || | Sbjct 14688 GCCGGGCGACGTCGTGCTCGACCCGTTCTTCGGCGTCGGCACCACGGGCGCGGCCGCCAA 14629 Query 44486 GCGCCTCGGCCGCCGTTTCATCGGCTGCGAACTCAACCCGGACTATG 44532 |||||| |||||||| ||||||||| ||| | | | | ||||||| Sbjct 14628 GCGCCTGGGCCGCCGGTTCATCGGCATCGAGCGCGAGACCGACTATG 14582 >seq10795 Length=12376 Score = 82.4 bits (90), Expect = 3e-11 Identities = 166/241 (69%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 16647 CCGCGAAGGCGGTGCGCGCGCTGTCGGTGCTGATTCCGGGCTTCCGCGCGTTCCTGACGT 16706 |||| |||| |||||||| |||| |||||| | |||||||||| || ||| | | Sbjct 7144 CCGCTGAGGCCGTGCGCGCTCTGTGCGTGCTGCTGCCGGGCTTCCAGCAGTACCTCATG- 7086 Query 16707 CGGCGCGCGACGGC---GGCCTCACGTTCGCCGTGTTCAACGGCCGGCGCAATCTCGGCG 16763 ||||| | | | | ||| | ||||||||||||| ||| |||| || || | Sbjct 7085 -GGCGC-CAAGGCCAAGGGCATGGAGTTCGCCGTGTTCGTCGGGCGGCAGAACCTGACCA 7028 Query 16764 AGGACGAGCTCGAGCATCCGGTGGGGCGC-GACGAGATTCGCATTGCTCCGGTAATCGTC 16822 |||| |||| | |||| | ||||| ||||| ||||| || |||||||| | || Sbjct 7027 AGGAACAGCTGCACGATCC-GCCCGGCGCTGACGACATTCGGATCGCTCCGGTGCTGGTG 6969 Query 16823 GGCAGCAAGCGCGGCGGGCTCTTCAACACGATTCTCGGCGCCGCACTCGTCGCTGTCGGC 16882 || |||||||| || || | | || ||||||||| || ||| ||| |||||| Sbjct 6968 GGTTCGAAGCGCGGAGGCGTCCTGCAGACAATTCTCGGCATCGTGCTCATCGTGGTCGGC 6909 Query 16883 G 16883 | Sbjct 6908 G 6908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170641479472930