Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_003324.1
Length=57416
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 259 2e-64
seq9425 127 8e-25
seq8824 122 3e-23
seq6714 113 2e-20
seq7425 105 2e-18
seq7098 102 3e-17
seq8453 98.7 4e-16
seq1205 95.1 4e-15
seq10910 89.7 2e-13
seq7411 86.0 2e-12
seq3179 86.0 2e-12
seq10450 84.2 8e-12
seq9875 82.4 3e-11
>seq7272
Length=98981
Score = 259 bits (286), Expect = 2e-64
Identities = 361/506 (71%), Gaps = 0/506 (0%)
Strand=Plus/Plus
Query 43494 CGCAGCAGGGCAATGATCTGATCGAGCAACTTGCGGCCACGGTTCATGATGCGCGGCACA 43553
||||||||||| | |||||| || |||| | ||||| || | ||||||||||||
Sbjct 9768 CGCAGCAGGGCCACGATCTGGTCCAGCAGGTGCCGGCCGCGCGTGGCGATGCGCGGCACG 9827
Query 43554 TTTTCGAAAATGATCAGCTTGGGAAGCTTGTCCTTGAAGGCTTCCAGCATCAGCCACACG 43613
|| |||||||| | ||||| ||| | | || | | || ||||||||||||||||||
Sbjct 9828 TTCTCGAAAATCACCAGCTCGGGCGGATCATCGCTCCATGCCTCCAGCATCAGCCACACG 9887
Query 43614 CCGCGCAACGTCAGCCGATTGAGGGCCTGATACTTGGCGGTCGCGCTCGACTGCTCGGAC 43673
||||||| |||||| || ||||||||||| |||||| |||| |||| |||||||
Sbjct 9888 CCGCGCAGCGTCAGGCGGTTGAGGGCCTGGTACTTGTCGGTTTTGCTCTTGCCCTCGGAC 9947
Query 43674 AGCAAGCCGGAGAAACCTTTGCATGGAGCGGACAAGAACACGATATCGGGGAACTCGCCA 43733
|||| |||| ||| || ||||| |||||||||| |||||||| | || |||||
Sbjct 9948 AGCAGGCCGCTGAATCCCTTGCAGGGAGCGGACAGAAACACGATGTTCGGCCGTTCGCCG 10007
Query 43734 TGCGCTGCGCGCCGAATGTCGTCCGGTACCGCCTGCTGCCAATCGGGATCAGGGTCGCGA 43793
||||||||| | || || | | | || | |||| || | || |||
Sbjct 10008 CCAGCTGCGCGCTGGATATCCGCGGCTGTGGCTTCGCGCCAGTCCGCTGGCGGCTCGGCG 10067
Query 43794 CTGTGAAAGGCCCGGTACTGCTCCAGGTCGAACAGATCGAGCAGGGTGCCGGGAACGCCG 43853
| ||| || | ||||| ||||| |||||||||| || |||| ||||||||| ||||||
Sbjct 10068 CCGTGGAATGTGCGGTATTGCTCGCGGTCGAACAGGTCCAGCACGGTGCCGGGCACGCCG 10127
Query 43854 GCAAGGCGCGTGAAATCACGGATGGCCGCCGGATCGTTGTCGATGCCCCCGATGCAGCGG 43913
|| ||||| ||| || |||||| ||||| || ||||||||| || | |||||||
Sbjct 10128 GCCAGGCGGCCGAAGTCCCGGATGCTGGCCGGGTCCACGTCGATGCCGCCCAGGCAGCGG 10187
Query 43914 AACTTGGCATTCAGACTACCGACACGAGCCGATCCCTTGTTGAAGCCTTTGGCGCCGGCA 43973
|| || || | ||| | || || || | | |||||| || |||||| |
Sbjct 10188 AATTTCGCCTGCAGGTTGCCCACTCGGGGGCTGGCGCGGTTGAAACCACGCGCGCCGCCG 10247
Query 43974 CCGAGCCCGCAAAACAGATGAAAGTG 43999
|| || ||||| |||||||| |||||
Sbjct 10248 CCCAGGCCGCAGAACAGATGGAAGTG 10273
Score = 120 bits (132), Expect = 1e-22
Identities = 206/292 (71%), Gaps = 8/292 (3%)
Strand=Plus/Plus
Query 41867 GGCGATCGGCTGCACCCAAATCGGCTGATTAGACAGCATGAACGTCTCGCCGGTCATGGC 41926
||| |||||| ||||||| | |||||| ||||| ||||| || ||||| ||| ||
Sbjct 8888 GGCAATCGGCCGCACCCAGACCGGCTGCGCCGACAGGATGAAGGTTTCGCCACTCAACGC 8947
Query 41927 GAGCAGCAGTGTGGTTCCCATAACGTCGGCGATCGCAGTCGCC-GCATCCGGAGGTACCG 41985
||||||||| || ||||| |||| |||||| || ||||| || || || || |
Sbjct 8948 GAGCAGCAGCGTTTCGCCCATGACGTGGGCGATGGC-TTCGCCGGCCTCGCTGGGCACGG 9006
Query 41986 CGTTCCCGATGCGCTCTCGCCAAGCGGAATCGGACTG--GCCGTCGAGGGTGAATATCTC 42043
| || ||||||||||| ||| || ||| ||| |||||| || | | |||
Sbjct 9007 CATTGCCGATGCGCTCGCGCTTGGCCTGGTCG--CTGGTGCCGTCCAGTTCCAGCAGCTC 9064
Query 42044 GTCTGGATCAACGAGGCTCTGCAACGCCGCTAACTCGAGAGTGGTGAACGGACGATGCCA 42103
||| || || || |||||||||| ||| | ||| || |||||||| || || |||||
Sbjct 9065 GTCGGGTTCGACCAGGCTCTGCAGGTGCGCCAGCTCCAGGGTGGTGAAAGGGCGGTGCCA 9124
Query 42104 CGTGCCATCAAGCGCACGGATTACGGC-AACGAGCCTATCAGCAGGGGCCGG 42154
||||| || || || | |||| ||||||| | ||||||| |||||
Sbjct 9125 TGTGCCGTC-CTCGGACACGATGCGGCAAACGAGCTTGTCAGCAGCTGCCGG 9175
>seq9425
Length=520298
Score = 127 bits (140), Expect = 8e-25
Identities = 151/201 (75%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 44069 CATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGT 44128
|||||||||||| || |||| |||||||| | |||| ||| |||||| |
Sbjct 45675 CATGCCGAGCGCGGCTTTGTAGAGATCGAGGATCGTTTCTTCTTCCTGCCGCTCCGCCTG 45734
Query 44129 GTCCTGCTTGCGCAGCGAGATCACCTTC-CGCAGGATC---TTGGCATCGAAGCCGGTCC 44184
||||||||||||||| | |||| | ||| ||||| |||| |||||||| || |
Sbjct 45735 GTCCTGCTTGCGCAG---GCGCACCAGCGCGC-GGATCGCCTTGGTGTCGAAGCCCGTAC 45790
Query 44185 CCTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCA 44244
|||| || || | || || |||||||||||||||||||| |||||||| |||||||| |
Sbjct 45791 CCTTGGCTTCCGCATAGACGTCCTTGATGTCGTCGGCGATCGTCTTCTTCTCTTCCTCGA 45850
Query 44245 AGCGTTCGATGCGGTGGATGA 44265
|| |||||||| | |||||
Sbjct 45851 GCCGCTCGATGCGCTCGATGA 45871
>seq8824
Length=455128
Score = 122 bits (134), Expect = 3e-23
Identities = 129/168 (77%), Gaps = 4/168 (2%)
Strand=Plus/Minus
Query 48641 GAAGAAGCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACAT 48700
||| ||||| || || ||||||| || ||||| ||| || || || ||| | | |||
Sbjct 130412 GAAAAAGCCTAATCCTATCGACATTCATGTCGGAAGCCGAATTCGTCTTCGCAGAACCAT 130353
Query 48701 CATCGGCATGAGCCAGGAGACGCTGGCTGCGCAT--CTCGGCATCACCTTCCAGCAGGTC 48758
| |||||||||||||| | ||||| ||| | || || || ||||| ||||| ||
Sbjct 130352 GCTGGGCATGAGCCAGGAAAAGCTGG--GCGAAAGCCTTGGAATTACCTTTCAGCAAATC 130295
Query 48759 CAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAG 48806
|||||||||||||||||| | ||||| |||||||||||| | ||||||
Sbjct 130294 CAGAAATACGAAAAGGGCACAAACCGTGTCGGCGCCAGCCGCCTGCAG 130247
>seq6714
Length=1758414
Score = 113 bits (124), Expect = 2e-20
Identities = 128/172 (74%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 48641 GAAGAAGCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACAT 48700
||| || || |||||||| ||||| || ||||| ||||||| | || || || || ||
Sbjct 1085824 GAAAAAACCAAACCCAATTGACACCCACGTCGGTAGCCGCATCAGACTTCGGCGTAATAT 1085765
Query 48701 CATCGGCATGAGCCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCA 48760
| || ||||||||||| | ||| | | | | || ||||| ||||| |||||| | ||
Sbjct 1085764 GCTTGGAATGAGCCAGGAAAAGCTTGGCGAGAACCTTGGCATAACCTTTCAGCAGATTCA 1085705
Query 48761 GAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAGGCCATC 48812
||| || || || ||| | ||||| ||||||||||| | ||||| || |||
Sbjct 1085704 GAAGTATGAGAAAGGCACGAACCGTGTCGGCGCCAGTCGCCTGCAAGCGATC 1085653
>seq7425
Length=164840
Score = 105 bits (116), Expect = 2e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 48658 TCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGGCATGAGCCAGG 48717
||||| || || ||||| || || || | ||||| || | | ||| | |||||||
Sbjct 157659 TCGACCTTCACGTTGGCGCGCGTATTCGAATGCGCCGGAAGCTTCTGGGCGTCAGCCAGG 157718
Query 48718 AGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATACGAAAAGGGCG 48777
|| |||||| | | |||| ||| | |||||||||||||||||||||||||| ||||
Sbjct 157719 AGCGGCTGGCCGAGGATCTGGGCCTGACCTTCCAGCAGGTCCAGAAATACGAGCGCGGCG 157778
Query 48778 CCAACCGCGTCGGCGCCAGCA 48798
|||| |||||| |||||||||
Sbjct 157779 CCAATCGCGTCAGCGCCAGCA 157799
>seq7098
Length=564653
Score = 102 bits (112), Expect = 3e-17
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 48653 CCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGGCATGAG 48712
||| |||||| ||| || || ||| ||| | | || ||||| ||||||||||
Sbjct 135219 CCCGATCGACGTGCATGTGGGAACCCAGATCAGAATGCGACGCAAGTCGCTCGGCATGAG 135160
Query 48713 CCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATACGAAAA 48772
|||| | ||||| | | |||||||| ||||| |||||||||||||||||||||||
Sbjct 135159 CCAGAGCGCTCTGGCCGGCCGGCTCGGCATTACCTTTCAGCAGGTCCAGAAATACGAAAA 135100
Query 48773 GGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAGGCCAT 48811
|||||||| ||||| || || | |||||||||||
Sbjct 135099 AGGCGCCAATCGCGTTGGTGCATCGCGTCTGCAGGCCAT 135061
>seq8453
Length=106269
Score = 98.7 bits (108), Expect = 4e-16
Identities = 141/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 44085 AGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGTGTCCTGCTTGCGCA-G 44143
|| ||| ||||| | ||||||| |||| |||| | | ||||||||||||||| |
Sbjct 48517 AGATAGAGGTCGATCAGCGCCTCTTCCTCCTGGCGCTTGGCCTTGTCCTGCTTGCGCATG 48576
Query 44144 CGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTTTGCCTCGCCGTACAC 44203
|| ||| ||||| ||||| | |||| | |||||||| ||||| |||||| || ||||
Sbjct 48577 CG-GATGACCTTGCGCAGCACCTTGACGTCGAAGCCTTCGCCCTTGGCCTCGGCGAACAC 48635
Query 44204 ATCCTTGATGTCGTCGGCGATGGTCT---TCTTTTCTTCCTCCAAGCGTTCGATGCGGTG 44260
|||||||| || ||| ||| || ||| || || || | ||| |||| ||| |
Sbjct 48636 GTCCTTGAT---GTGGGCCATGACCTCGGCCTTCTCCTCTTCGAGGCGCTCGACGCGCTC 48692
Query 44261 GATGAAGGCCTTGAG 44275
||||| || ||| ||
Sbjct 48693 GATGATGGTCTTCAG 48707
>seq1205
Length=48877
Score = 95.1 bits (104), Expect = 4e-15
Identities = 144/201 (72%), Gaps = 12/201 (6%)
Strand=Plus/Minus
Query 44069 CATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTC--TTGCTCCATCCGCTCGT-C 44125
|||||||||||| | ||| ||||| || || | |||| || || | || |||| |
Sbjct 31733 CATGCCGAGCGCGGAGAGATAGGTCTCCAGCACCGCCTGCATTTCTTGA--CGATCGTGC 31676
Query 44126 GGTGTCCTGC---TTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGT 44182
|| |||| |||||||| ||| | || |||| |||||||| ||| | |||||
Sbjct 31675 GG----CTGCATTTTGCGCAGGCGGATGATCTGGCGCATGATCTTGGGGTCGTAACCGGT 31620
Query 44183 CCCCTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTC 44242
| |||| || || || || ||||||||||||||| ||| |||||| ||||||||
Sbjct 31619 CGCCTTGGCTTCCAGATAGACGTCCTTGATGTCGTCGCTGATCCCCTTCTTCTCTTCCTC 31560
Query 44243 CAAGCGTTCGATGCGGTGGAT 44263
|| || |||||||| | |||
Sbjct 31559 CAGCCGCTCGATGCGCTCGAT 31539
>seq10910
Length=200385
Score = 89.7 bits (98), Expect = 2e-13
Identities = 150/216 (69%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 44066 GATCATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTC 44125
|||| ||||| || | ||||||| ||||||||| || || | ||| |||| | |
Sbjct 191941 GATCTCGCCGATGGCCGAGAGGTAGAGGTCGAGGATCGCGTCCTCTTCCTGGCGCTTGGC 191882
Query 44126 GGTGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCC 44185
| ||||||||||||||| | |||||| ||| | |||| | ||||||||| | ||
Sbjct 191881 GCGGTCCTGCTTGCGCAGGCGCACGACCTTCTTCAGCACCTTGACGTCGAAGCCGTTGCC 191822
Query 44186 CTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCT---TCTTTTCTTCCTC 44242
||| |||||| || || |||||||| | | | ||| ||| ||| || ||||
Sbjct 191821 CTTGGCCTCGTTATAGACTTCCTTGATCTGCT---CCATGATCTCGGCCTTCTCGACCTC 191765
Query 44243 CAAGCGTTCGATGCGGTGGATGAAGGCCTTGAGCTG 44278
| ||| |||| ||| | ||||| | ||| || ||
Sbjct 191764 GAGGCGCTCGACGCGCTCGATGATCGACTTCAGTTG 191729
>seq7411
Length=194455
Score = 86.0 bits (94), Expect = 2e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 48647 GCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGG 48706
||| ||||| |||||| ||| |||||||||||| | || ||||||||| | |||
Sbjct 57543 GCCCAACCCGATCGACCTGCATGTCGGCGCCCGCGTGCGCACCCGCCGCAAGGTGGCCGG 57484
Query 48707 CATGAGCCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATA 48766
| | |||||||| |||||| || || |||| ||||||||||| ||||| ||
Sbjct 57483 CGTCAGCCAGGAACAGCTGGCCGCCGGACTGAAGCTCACTTTCCAGCAGGTGCAGAAGTA 57424
Query 48767 CGAAAAGGGCGCCAACCGCGTCGGCGC 48793
||| |||||||| ||| || ||||
Sbjct 57423 CGAGCGCGGCGCCAATCGCATCAGCGC 57397
>seq3179
Length=53465
Score = 86.0 bits (94), Expect = 2e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 48703 TCGGCATGAGCCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGA 48762
|||| ||||||||| | || ||||| | | |||||| |||||||||||||| ||||||
Sbjct 49427 TCGGTATGAGCCAGAACACCCTGGCCGACCGGCTCGGCGTCACCTTCCAGCAGATCCAGA 49368
Query 48763 AATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGC 48797
|||| || || ||| ||||||| ||| || | |||
Sbjct 49367 AATATGAGAAAGGCACCAACCGGGTCAGCTCAAGC 49333
>seq10450
Length=29481
Score = 84.2 bits (92), Expect = 8e-12
Identities = 106/143 (74%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 48646 AGCCGAACCCAATCGACA-CGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATC 48704
|||| |||| ||||||| ||| |||||||||| ||||| || || || | |
Sbjct 16289 AGCCAGACCCCATCGACATCGCCA-TCGGCGCCCGTATCCGACTGCGGCGGCGGGGCTTG 16231
Query 48705 GGCATGAGCCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAA 48764
||||||| ||||| || || ||| |||||| | || ||||||||||||||||||
Sbjct 16230 GGCATGACGCAGGAAGTCCTCGCCCAGCACCTCGGCCTGACGTTCCAGCAGGTCCAGAAA 16171
Query 48765 TACGAAAAGGGCGCCAACCGCGT 48787
|| || ||||||| ||||||||
Sbjct 16170 TATGAGAAGGGCGTGAACCGCGT 16148
>seq9875
Length=154362
Score = 82.4 bits (90), Expect = 3e-11
Identities = 87/111 (78%), Gaps = 8/111 (7%)
Strand=Plus/Minus
Query 48690 CGCCGCAACATCATCGGCATGAGCCAGGAGACGC---TGGCTG-CGCATCTCGGCATCAC 48745
|||||||| || || || | |||||| || | |||| | ||| || ||||||||
Sbjct 33256 CGCCGCAAGATGATGGGGCTCAGCCAG---ACTCAAGTGGCCGACGCC-CTTGGCATCAC 33201
Query 48746 CTTCCAGCAGGTCCAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAG 48796
|||||||||| |||||||||||||| ||||||||| ||| || |||||||
Sbjct 33200 CTTCCAGCAGATCCAGAAATACGAACGGGGCGCCAATCGCATCAGCGCCAG 33150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 183576765898524
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