Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq7272 259 2e-64 seq9425 127 8e-25 seq8824 122 3e-23 seq6714 113 2e-20 seq7425 105 2e-18 seq7098 102 3e-17 seq8453 98.7 4e-16 seq1205 95.1 4e-15 seq10910 89.7 2e-13 seq7411 86.0 2e-12 seq3179 86.0 2e-12 seq10450 84.2 8e-12 seq9875 82.4 3e-11 >seq7272 Length=98981 Score = 259 bits (286), Expect = 2e-64 Identities = 361/506 (71%), Gaps = 0/506 (0%) Strand=Plus/Plus Query 43494 CGCAGCAGGGCAATGATCTGATCGAGCAACTTGCGGCCACGGTTCATGATGCGCGGCACA 43553 ||||||||||| | |||||| || |||| | ||||| || | |||||||||||| Sbjct 9768 CGCAGCAGGGCCACGATCTGGTCCAGCAGGTGCCGGCCGCGCGTGGCGATGCGCGGCACG 9827 Query 43554 TTTTCGAAAATGATCAGCTTGGGAAGCTTGTCCTTGAAGGCTTCCAGCATCAGCCACACG 43613 || |||||||| | ||||| ||| | | || | | || |||||||||||||||||| Sbjct 9828 TTCTCGAAAATCACCAGCTCGGGCGGATCATCGCTCCATGCCTCCAGCATCAGCCACACG 9887 Query 43614 CCGCGCAACGTCAGCCGATTGAGGGCCTGATACTTGGCGGTCGCGCTCGACTGCTCGGAC 43673 ||||||| |||||| || ||||||||||| |||||| |||| |||| ||||||| Sbjct 9888 CCGCGCAGCGTCAGGCGGTTGAGGGCCTGGTACTTGTCGGTTTTGCTCTTGCCCTCGGAC 9947 Query 43674 AGCAAGCCGGAGAAACCTTTGCATGGAGCGGACAAGAACACGATATCGGGGAACTCGCCA 43733 |||| |||| ||| || ||||| |||||||||| |||||||| | || ||||| Sbjct 9948 AGCAGGCCGCTGAATCCCTTGCAGGGAGCGGACAGAAACACGATGTTCGGCCGTTCGCCG 10007 Query 43734 TGCGCTGCGCGCCGAATGTCGTCCGGTACCGCCTGCTGCCAATCGGGATCAGGGTCGCGA 43793 ||||||||| | || || | | | || | |||| || | || ||| Sbjct 10008 CCAGCTGCGCGCTGGATATCCGCGGCTGTGGCTTCGCGCCAGTCCGCTGGCGGCTCGGCG 10067 Query 43794 CTGTGAAAGGCCCGGTACTGCTCCAGGTCGAACAGATCGAGCAGGGTGCCGGGAACGCCG 43853 | ||| || | ||||| ||||| |||||||||| || |||| ||||||||| |||||| Sbjct 10068 CCGTGGAATGTGCGGTATTGCTCGCGGTCGAACAGGTCCAGCACGGTGCCGGGCACGCCG 10127 Query 43854 GCAAGGCGCGTGAAATCACGGATGGCCGCCGGATCGTTGTCGATGCCCCCGATGCAGCGG 43913 || ||||| ||| || |||||| ||||| || ||||||||| || | ||||||| Sbjct 10128 GCCAGGCGGCCGAAGTCCCGGATGCTGGCCGGGTCCACGTCGATGCCGCCCAGGCAGCGG 10187 Query 43914 AACTTGGCATTCAGACTACCGACACGAGCCGATCCCTTGTTGAAGCCTTTGGCGCCGGCA 43973 || || || | ||| | || || || | | |||||| || |||||| | Sbjct 10188 AATTTCGCCTGCAGGTTGCCCACTCGGGGGCTGGCGCGGTTGAAACCACGCGCGCCGCCG 10247 Query 43974 CCGAGCCCGCAAAACAGATGAAAGTG 43999 || || ||||| |||||||| ||||| Sbjct 10248 CCCAGGCCGCAGAACAGATGGAAGTG 10273 Score = 120 bits (132), Expect = 1e-22 Identities = 206/292 (71%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 41867 GGCGATCGGCTGCACCCAAATCGGCTGATTAGACAGCATGAACGTCTCGCCGGTCATGGC 41926 ||| |||||| ||||||| | |||||| ||||| ||||| || ||||| ||| || Sbjct 8888 GGCAATCGGCCGCACCCAGACCGGCTGCGCCGACAGGATGAAGGTTTCGCCACTCAACGC 8947 Query 41927 GAGCAGCAGTGTGGTTCCCATAACGTCGGCGATCGCAGTCGCC-GCATCCGGAGGTACCG 41985 ||||||||| || ||||| |||| |||||| || ||||| || || || || | Sbjct 8948 GAGCAGCAGCGTTTCGCCCATGACGTGGGCGATGGC-TTCGCCGGCCTCGCTGGGCACGG 9006 Query 41986 CGTTCCCGATGCGCTCTCGCCAAGCGGAATCGGACTG--GCCGTCGAGGGTGAATATCTC 42043 | || ||||||||||| ||| || ||| ||| |||||| || | | ||| Sbjct 9007 CATTGCCGATGCGCTCGCGCTTGGCCTGGTCG--CTGGTGCCGTCCAGTTCCAGCAGCTC 9064 Query 42044 GTCTGGATCAACGAGGCTCTGCAACGCCGCTAACTCGAGAGTGGTGAACGGACGATGCCA 42103 ||| || || || |||||||||| ||| | ||| || |||||||| || || ||||| Sbjct 9065 GTCGGGTTCGACCAGGCTCTGCAGGTGCGCCAGCTCCAGGGTGGTGAAAGGGCGGTGCCA 9124 Query 42104 CGTGCCATCAAGCGCACGGATTACGGC-AACGAGCCTATCAGCAGGGGCCGG 42154 ||||| || || || | |||| ||||||| | ||||||| ||||| Sbjct 9125 TGTGCCGTC-CTCGGACACGATGCGGCAAACGAGCTTGTCAGCAGCTGCCGG 9175 >seq9425 Length=520298 Score = 127 bits (140), Expect = 8e-25 Identities = 151/201 (75%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 44069 CATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGT 44128 |||||||||||| || |||| |||||||| | |||| ||| |||||| | Sbjct 45675 CATGCCGAGCGCGGCTTTGTAGAGATCGAGGATCGTTTCTTCTTCCTGCCGCTCCGCCTG 45734 Query 44129 GTCCTGCTTGCGCAGCGAGATCACCTTC-CGCAGGATC---TTGGCATCGAAGCCGGTCC 44184 ||||||||||||||| | |||| | ||| ||||| |||| |||||||| || | Sbjct 45735 GTCCTGCTTGCGCAG---GCGCACCAGCGCGC-GGATCGCCTTGGTGTCGAAGCCCGTAC 45790 Query 44185 CCTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCA 44244 |||| || || | || || |||||||||||||||||||| |||||||| |||||||| | Sbjct 45791 CCTTGGCTTCCGCATAGACGTCCTTGATGTCGTCGGCGATCGTCTTCTTCTCTTCCTCGA 45850 Query 44245 AGCGTTCGATGCGGTGGATGA 44265 || |||||||| | ||||| Sbjct 45851 GCCGCTCGATGCGCTCGATGA 45871 >seq8824 Length=455128 Score = 122 bits (134), Expect = 3e-23 Identities = 129/168 (77%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 48641 GAAGAAGCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACAT 48700 ||| ||||| || || ||||||| || ||||| ||| || || || ||| | | ||| Sbjct 130412 GAAAAAGCCTAATCCTATCGACATTCATGTCGGAAGCCGAATTCGTCTTCGCAGAACCAT 130353 Query 48701 CATCGGCATGAGCCAGGAGACGCTGGCTGCGCAT--CTCGGCATCACCTTCCAGCAGGTC 48758 | |||||||||||||| | ||||| ||| | || || || ||||| ||||| || Sbjct 130352 GCTGGGCATGAGCCAGGAAAAGCTGG--GCGAAAGCCTTGGAATTACCTTTCAGCAAATC 130295 Query 48759 CAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAG 48806 |||||||||||||||||| | ||||| |||||||||||| | |||||| Sbjct 130294 CAGAAATACGAAAAGGGCACAAACCGTGTCGGCGCCAGCCGCCTGCAG 130247 >seq6714 Length=1758414 Score = 113 bits (124), Expect = 2e-20 Identities = 128/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 48641 GAAGAAGCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACAT 48700 ||| || || |||||||| ||||| || ||||| ||||||| | || || || || || Sbjct 1085824 GAAAAAACCAAACCCAATTGACACCCACGTCGGTAGCCGCATCAGACTTCGGCGTAATAT 1085765 Query 48701 CATCGGCATGAGCCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCA 48760 | || ||||||||||| | ||| | | | | || ||||| ||||| |||||| | || Sbjct 1085764 GCTTGGAATGAGCCAGGAAAAGCTTGGCGAGAACCTTGGCATAACCTTTCAGCAGATTCA 1085705 Query 48761 GAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAGGCCATC 48812 ||| || || || ||| | ||||| ||||||||||| | ||||| || ||| Sbjct 1085704 GAAGTATGAGAAAGGCACGAACCGTGTCGGCGCCAGTCGCCTGCAAGCGATC 1085653 >seq7425 Length=164840 Score = 105 bits (116), Expect = 2e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 48658 TCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGGCATGAGCCAGG 48717 ||||| || || ||||| || || || | ||||| || | | ||| | ||||||| Sbjct 157659 TCGACCTTCACGTTGGCGCGCGTATTCGAATGCGCCGGAAGCTTCTGGGCGTCAGCCAGG 157718 Query 48718 AGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATACGAAAAGGGCG 48777 || |||||| | | |||| ||| | |||||||||||||||||||||||||| |||| Sbjct 157719 AGCGGCTGGCCGAGGATCTGGGCCTGACCTTCCAGCAGGTCCAGAAATACGAGCGCGGCG 157778 Query 48778 CCAACCGCGTCGGCGCCAGCA 48798 |||| |||||| ||||||||| Sbjct 157779 CCAATCGCGTCAGCGCCAGCA 157799 >seq7098 Length=564653 Score = 102 bits (112), Expect = 3e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 48653 CCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGGCATGAG 48712 ||| |||||| ||| || || ||| ||| | | || ||||| |||||||||| Sbjct 135219 CCCGATCGACGTGCATGTGGGAACCCAGATCAGAATGCGACGCAAGTCGCTCGGCATGAG 135160 Query 48713 CCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATACGAAAA 48772 |||| | ||||| | | |||||||| ||||| ||||||||||||||||||||||| Sbjct 135159 CCAGAGCGCTCTGGCCGGCCGGCTCGGCATTACCTTTCAGCAGGTCCAGAAATACGAAAA 135100 Query 48773 GGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAGGCCAT 48811 |||||||| ||||| || || | ||||||||||| Sbjct 135099 AGGCGCCAATCGCGTTGGTGCATCGCGTCTGCAGGCCAT 135061 >seq8453 Length=106269 Score = 98.7 bits (108), Expect = 4e-16 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 44085 AGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGTGTCCTGCTTGCGCA-G 44143 || ||| ||||| | ||||||| |||| |||| | | ||||||||||||||| | Sbjct 48517 AGATAGAGGTCGATCAGCGCCTCTTCCTCCTGGCGCTTGGCCTTGTCCTGCTTGCGCATG 48576 Query 44144 CGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTTTGCCTCGCCGTACAC 44203 || ||| ||||| ||||| | |||| | |||||||| ||||| |||||| || |||| Sbjct 48577 CG-GATGACCTTGCGCAGCACCTTGACGTCGAAGCCTTCGCCCTTGGCCTCGGCGAACAC 48635 Query 44204 ATCCTTGATGTCGTCGGCGATGGTCT---TCTTTTCTTCCTCCAAGCGTTCGATGCGGTG 44260 |||||||| || ||| ||| || ||| || || || | ||| |||| ||| | Sbjct 48636 GTCCTTGAT---GTGGGCCATGACCTCGGCCTTCTCCTCTTCGAGGCGCTCGACGCGCTC 48692 Query 44261 GATGAAGGCCTTGAG 44275 ||||| || ||| || Sbjct 48693 GATGATGGTCTTCAG 48707 >seq1205 Length=48877 Score = 95.1 bits (104), Expect = 4e-15 Identities = 144/201 (72%), Gaps = 12/201 (6%) Strand=Plus/Minus Query 44069 CATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTC--TTGCTCCATCCGCTCGT-C 44125 |||||||||||| | ||| ||||| || || | |||| || || | || |||| | Sbjct 31733 CATGCCGAGCGCGGAGAGATAGGTCTCCAGCACCGCCTGCATTTCTTGA--CGATCGTGC 31676 Query 44126 GGTGTCCTGC---TTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGT 44182 || |||| |||||||| ||| | || |||| |||||||| ||| | ||||| Sbjct 31675 GG----CTGCATTTTGCGCAGGCGGATGATCTGGCGCATGATCTTGGGGTCGTAACCGGT 31620 Query 44183 CCCCTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTC 44242 | |||| || || || || ||||||||||||||| ||| |||||| |||||||| Sbjct 31619 CGCCTTGGCTTCCAGATAGACGTCCTTGATGTCGTCGCTGATCCCCTTCTTCTCTTCCTC 31560 Query 44243 CAAGCGTTCGATGCGGTGGAT 44263 || || |||||||| | ||| Sbjct 31559 CAGCCGCTCGATGCGCTCGAT 31539 >seq10910 Length=200385 Score = 89.7 bits (98), Expect = 2e-13 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 44066 GATCATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTC 44125 |||| ||||| || | ||||||| ||||||||| || || | ||| |||| | | Sbjct 191941 GATCTCGCCGATGGCCGAGAGGTAGAGGTCGAGGATCGCGTCCTCTTCCTGGCGCTTGGC 191882 Query 44126 GGTGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCC 44185 | ||||||||||||||| | |||||| ||| | |||| | ||||||||| | || Sbjct 191881 GCGGTCCTGCTTGCGCAGGCGCACGACCTTCTTCAGCACCTTGACGTCGAAGCCGTTGCC 191822 Query 44186 CTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCT---TCTTTTCTTCCTC 44242 ||| |||||| || || |||||||| | | | ||| ||| ||| || |||| Sbjct 191821 CTTGGCCTCGTTATAGACTTCCTTGATCTGCT---CCATGATCTCGGCCTTCTCGACCTC 191765 Query 44243 CAAGCGTTCGATGCGGTGGATGAAGGCCTTGAGCTG 44278 | ||| |||| ||| | ||||| | ||| || || Sbjct 191764 GAGGCGCTCGACGCGCTCGATGATCGACTTCAGTTG 191729 >seq7411 Length=194455 Score = 86.0 bits (94), Expect = 2e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 48647 GCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGG 48706 ||| ||||| |||||| ||| |||||||||||| | || ||||||||| | ||| Sbjct 57543 GCCCAACCCGATCGACCTGCATGTCGGCGCCCGCGTGCGCACCCGCCGCAAGGTGGCCGG 57484 Query 48707 CATGAGCCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATA 48766 | | |||||||| |||||| || || |||| ||||||||||| ||||| || Sbjct 57483 CGTCAGCCAGGAACAGCTGGCCGCCGGACTGAAGCTCACTTTCCAGCAGGTGCAGAAGTA 57424 Query 48767 CGAAAAGGGCGCCAACCGCGTCGGCGC 48793 ||| |||||||| ||| || |||| Sbjct 57423 CGAGCGCGGCGCCAATCGCATCAGCGC 57397 >seq3179 Length=53465 Score = 86.0 bits (94), Expect = 2e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 48703 TCGGCATGAGCCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGA 48762 |||| ||||||||| | || ||||| | | |||||| |||||||||||||| |||||| Sbjct 49427 TCGGTATGAGCCAGAACACCCTGGCCGACCGGCTCGGCGTCACCTTCCAGCAGATCCAGA 49368 Query 48763 AATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGC 48797 |||| || || ||| ||||||| ||| || | ||| Sbjct 49367 AATATGAGAAAGGCACCAACCGGGTCAGCTCAAGC 49333 >seq10450 Length=29481 Score = 84.2 bits (92), Expect = 8e-12 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 48646 AGCCGAACCCAATCGACA-CGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATC 48704 |||| |||| ||||||| ||| |||||||||| ||||| || || || | | Sbjct 16289 AGCCAGACCCCATCGACATCGCCA-TCGGCGCCCGTATCCGACTGCGGCGGCGGGGCTTG 16231 Query 48705 GGCATGAGCCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAA 48764 ||||||| ||||| || || ||| |||||| | || |||||||||||||||||| Sbjct 16230 GGCATGACGCAGGAAGTCCTCGCCCAGCACCTCGGCCTGACGTTCCAGCAGGTCCAGAAA 16171 Query 48765 TACGAAAAGGGCGCCAACCGCGT 48787 || || ||||||| |||||||| Sbjct 16170 TATGAGAAGGGCGTGAACCGCGT 16148 >seq9875 Length=154362 Score = 82.4 bits (90), Expect = 3e-11 Identities = 87/111 (78%), Gaps = 8/111 (7%) Strand=Plus/Minus Query 48690 CGCCGCAACATCATCGGCATGAGCCAGGAGACGC---TGGCTG-CGCATCTCGGCATCAC 48745 |||||||| || || || | |||||| || | |||| | ||| || |||||||| Sbjct 33256 CGCCGCAAGATGATGGGGCTCAGCCAG---ACTCAAGTGGCCGACGCC-CTTGGCATCAC 33201 Query 48746 CTTCCAGCAGGTCCAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAG 48796 |||||||||| |||||||||||||| ||||||||| ||| || ||||||| Sbjct 33200 CTTCCAGCAGATCCAGAAATACGAACGGGGCGCCAATCGCATCAGCGCCAG 33150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183576765898524