Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_003356.1
Length=42575
Score E
Sequences producing significant alignments: (Bits) Value
seq7304 205 3e-48
>seq7304
Length=19908
Score = 205 bits (226), Expect = 3e-48
Identities = 507/758 (67%), Gaps = 16/758 (2%)
Strand=Plus/Minus
Query 22528 TTGCCACACACCAAAGGGGAGTGGGCATTTAAACGGATGCCCATTACGCTTGAACCCTGG 22587
||||| ||||| ||||| ||||||||| | ||| | ||| | | || || || |||
Sbjct 14380 TTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTAAGACTAGAGCCTTGG 14321
Query 22588 CAGTTGTTCTGTATTTGTGTTGTGTTT--GGGTGGGTGAGAAAAAAGAGCGGCCTGCGTC 22645
||| || || | ||| |||| || || ||||| | |||||| || ||||
Sbjct 14320 CAGAAATT-TGGAATTGC-TTGTACTTTCGGCTGGGTTCGTAAAAAGGATGGGTACCGTC 14263
Query 22646 GATTTCGCGAGGCTTACAACGAAATACCCCGTAAAAACGGGAAATCAGCAATGTCTGCTG 22705
|||| | ||| |||| ||||| || |||||||| || || |||||||| | ||||
Sbjct 14262 GATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCAGCAATTGCAGCTG 14203
Query 22706 GCGTTGGTCTGTATATGTTTGCCTGCGATGATGAATTTGGCGCTGAAGTGTATTCCGGGG 22765
| |||| ||| |||||||||| |||| ||||| ||| || || || | || |
Sbjct 14202 GTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAGGTTTACGCTGGTG 14143
Query 22766 CCACAACAGAGAAACAGGCGTGGGAAGTTTTTCGTCCAGCCAGACTGATGGCGCAACGCA 22825
| || || || ||||| || |||||||| ||| ||||| || | ||||| ||
Sbjct 14142 CGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTAATGGCAGTGCGTT 14083
Query 22826 CGGAACC--ATTGCGT-GAAGCATTTGGTATTGAAGTACATGCTCAAAG-CATGAGCCGT 22881
| ||| ||| || || ||| ||| || | || ||||| || | |||
Sbjct 14082 C---ACCTGATTTTGTTGAGGCAGCTGGAATACAGATAAATGCTGGCAGTCTTGAAATA- 14027
Query 22882 CCGGAGGACGGTGCCCGTTTTGAACCGTTGATTGGAGATCCCGGAGACGGCGCGTCGCCG 22941
|| || || || | |||||| | | | || ||||| || || ||| |||
Sbjct 14026 CCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGACAGTCACCG 13967
Query 22942 AGTTGCGCCCTCATTGATGAATATCACGAGCATCAGACCGATGCGCTTTACCAGACGATG 23001
||| || | ||||||||||||||||||||||| || |||| | ||| | || |||
Sbjct 13966 CATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAATGCACAGTACGACACTATG 13907
Query 23002 CAAACTGGGATGGGGGCACGTCGTCAGCCGCTGATTTTTGGTATCACCACTGCGGGCTAT 23061
||||| || |||||||| ||||||||||| |||| |||| ||| || || | || |
Sbjct 13906 CAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGGTTTC 13847
Query 23062 AACATTGAAGGACCATGCTACGACAAACGTCGTGAAGTGATC--GAAATGCTTGAAGGGA 23119
|| ||||| || || || ||||| ||| | | || || || ||| | || |
Sbjct 13846 AATATTGATGGTCCTTGTCACGACTTGCGT--TTACGTATTCAAGACATGTTGCTTGGTA 13789
Query 23120 TTGTGCCCAATGATGAACTGTTCGGGATTATTTATACCATTGACGACGGGGATGACTGGA 23179
||||| ||||||| ||||| || ||| | |||||||| || || ||||| ||||
Sbjct 13788 CAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGAGTGGA 13729
Query 23180 CAGATCCGGCGGTATTGCGTAAAGCGAACCCCAATATGGGGATTTCTGTCTACAGCGATT 23239
||||||| |||||| || || || || ||| | ||||||| || ||||||
Sbjct 13728 CAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTTTATGGCGATT 13669
Query 23240 ACCTGTTATCTCAACAGCGCGCGGCAATTAACAACCCA 23277
|||| || || || || |||||| || || |||
Sbjct 13668 ACCTTGAGTCACAGCAACGTAAGGCAATAAATAATCCA 13631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 136094058542046
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |