Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq7304 205 3e-48 >seq7304 Length=19908 Score = 205 bits (226), Expect = 3e-48 Identities = 507/758 (67%), Gaps = 16/758 (2%) Strand=Plus/Minus Query 22528 TTGCCACACACCAAAGGGGAGTGGGCATTTAAACGGATGCCCATTACGCTTGAACCCTGG 22587 ||||| ||||| ||||| ||||||||| | ||| | ||| | | || || || ||| Sbjct 14380 TTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTAAGACTAGAGCCTTGG 14321 Query 22588 CAGTTGTTCTGTATTTGTGTTGTGTTT--GGGTGGGTGAGAAAAAAGAGCGGCCTGCGTC 22645 ||| || || | ||| |||| || || ||||| | |||||| || |||| Sbjct 14320 CAGAAATT-TGGAATTGC-TTGTACTTTCGGCTGGGTTCGTAAAAAGGATGGGTACCGTC 14263 Query 22646 GATTTCGCGAGGCTTACAACGAAATACCCCGTAAAAACGGGAAATCAGCAATGTCTGCTG 22705 |||| | ||| |||| ||||| || |||||||| || || |||||||| | |||| Sbjct 14262 GATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCAGCAATTGCAGCTG 14203 Query 22706 GCGTTGGTCTGTATATGTTTGCCTGCGATGATGAATTTGGCGCTGAAGTGTATTCCGGGG 22765 | |||| ||| |||||||||| |||| ||||| ||| || || || | || | Sbjct 14202 GTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAGGTTTACGCTGGTG 14143 Query 22766 CCACAACAGAGAAACAGGCGTGGGAAGTTTTTCGTCCAGCCAGACTGATGGCGCAACGCA 22825 | || || || ||||| || |||||||| ||| ||||| || | ||||| || Sbjct 14142 CGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTAATGGCAGTGCGTT 14083 Query 22826 CGGAACC--ATTGCGT-GAAGCATTTGGTATTGAAGTACATGCTCAAAG-CATGAGCCGT 22881 | ||| ||| || || ||| ||| || | || ||||| || | ||| Sbjct 14082 C---ACCTGATTTTGTTGAGGCAGCTGGAATACAGATAAATGCTGGCAGTCTTGAAATA- 14027 Query 22882 CCGGAGGACGGTGCCCGTTTTGAACCGTTGATTGGAGATCCCGGAGACGGCGCGTCGCCG 22941 || || || || | |||||| | | | || ||||| || || ||| ||| Sbjct 14026 CCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGACAGTCACCG 13967 Query 22942 AGTTGCGCCCTCATTGATGAATATCACGAGCATCAGACCGATGCGCTTTACCAGACGATG 23001 ||| || | ||||||||||||||||||||||| || |||| | ||| | || ||| Sbjct 13966 CATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAATGCACAGTACGACACTATG 13907 Query 23002 CAAACTGGGATGGGGGCACGTCGTCAGCCGCTGATTTTTGGTATCACCACTGCGGGCTAT 23061 ||||| || |||||||| ||||||||||| |||| |||| ||| || || | || | Sbjct 13906 CAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGGTTTC 13847 Query 23062 AACATTGAAGGACCATGCTACGACAAACGTCGTGAAGTGATC--GAAATGCTTGAAGGGA 23119 || ||||| || || || ||||| ||| | | || || || ||| | || | Sbjct 13846 AATATTGATGGTCCTTGTCACGACTTGCGT--TTACGTATTCAAGACATGTTGCTTGGTA 13789 Query 23120 TTGTGCCCAATGATGAACTGTTCGGGATTATTTATACCATTGACGACGGGGATGACTGGA 23179 ||||| ||||||| ||||| || ||| | |||||||| || || ||||| |||| Sbjct 13788 CAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGAGTGGA 13729 Query 23180 CAGATCCGGCGGTATTGCGTAAAGCGAACCCCAATATGGGGATTTCTGTCTACAGCGATT 23239 ||||||| |||||| || || || || ||| | ||||||| || |||||| Sbjct 13728 CAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTTTATGGCGATT 13669 Query 23240 ACCTGTTATCTCAACAGCGCGCGGCAATTAACAACCCA 23277 |||| || || || || |||||| || || ||| Sbjct 13668 ACCTTGAGTCACAGCAACGTAAGGCAATAAATAATCCA 13631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136094058542046