Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 322 4e-83
seq608 114 1e-20
seq13960 102 8e-17
>seq8995
Length=8301158
Score = 322 bits (356), Expect = 4e-83
Identities = 621/909 (68%), Gaps = 9/909 (1%)
Strand=Plus/Plus
Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366
||||||| | ||||| | ||| ||||| | |||| || || |||| || | || |
Sbjct 6971343 ATTCTCTGTTGGATTTGACATCACTCCCATTCTCTGATTCTCGCTTACTC-TCTTCTCAA 6971401
Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426
| || |||||||| || || ||||| |||| ||||||||| ||| ||||| | ||| |
Sbjct 6971402 AGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTT 6971461
Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486
|||| || || | | || | ||| | | ||||||||| ||||| || || ||||
Sbjct 6971462 TGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACT 6971521
Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546
| ||| ||| |||||||| || || || | ||| || | || | || | ||||
Sbjct 6971522 GCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACT 6971581
Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606
||| |||||| |||| |||| | |||||| | ||| | || || ||| |
Sbjct 6971582 CCTGTTCTATCCTAACTGCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGT 6971641
Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666
| || | ||||| ||||| | || | ||| ||||| || ||||| || ||||| || |
Sbjct 6971642 GCAACAGGTGTTTGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAA 6971701
Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726
| |||||||| ||||| || | || ||||||| ||||||||| || | ||| |||||||
Sbjct 6971702 TAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAG 6971761
Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786
||||| ||||| |||||||| || || ||||| || ||||| ||||| || | |||||
Sbjct 6971762 ACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTC 6971821
Query 11787 CATAT--ACCTTGTTGCTAGATA-TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843
||||| | ||| || | | |||| ||||||||| || ||||| || || |
Sbjct 6971822 CATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACAC 6971881
Query 11844 ATTCCATTGTTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATA 11901
| ||| || || || || || || | | ||| ||||| | |||| | | ||
Sbjct 6971882 AAGGCATCGTCTCAATGGCATTGAAGAGAA--ATTCCCTTTCTTTGGAATCTTTAATGTA 6971939
Query 11902 TGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCC 11961
|| || || | | |||||||||||| ||||| || |||||||| || ||||| || ||
Sbjct 6971940 AGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCC 6971999
Query 11962 ATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTC 12021
||||||||| | ||||| | | ||| || || ||| | ||| | || || ||
Sbjct 6972000 ATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTC 6972059
Query 12022 ATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC 12081
|||||| || |||||||| | |||||| || || || | ||| ||||| ||| | ||
Sbjct 6972060 ATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTC 6972119
Query 12082 GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGT 12141
|| | | ||||| | | | || || || | || || || ||| | ||
Sbjct 6972120 CTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGT 6972179
Query 12142 CCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAA 12201
|||||| ||| | | || |||||||| | ||| |||||||| || | ||||| ||
Sbjct 6972180 CCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 6972239
Query 12202 AATAACGAA 12210
|| || ||
Sbjct 6972240 GATGACAAA 6972248
>seq608
Length=3558542
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || || ||||| ||||| || | ||| ||||| | ||||| ||| |
Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| |
Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2088483
Query 11772 CTACTACTCTTTCTCC 11787
| || || ||||| ||
Sbjct 2088482 CCACCACCCTTTCCCC 2088467
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || ||
Sbjct 2083354 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 2083295
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995
|||||||| ||||||||||| || ||||||| | |||||| |||
Sbjct 2083294 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACTTCC 2083249
>seq13960
Length=3940437
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | || || || || || ||||| |||||||||
Sbjct 2049915 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2049974
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | ||||| |||| || || ||||||||||| || || || || |
Sbjct 2049975 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2050034
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 2050035 CTGTTTCTTATACCAT 2050050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468436606062960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |