Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq8995 322 4e-83 seq608 114 1e-20 seq13960 102 8e-17 >seq8995 Length=8301158 Score = 322 bits (356), Expect = 4e-83 Identities = 621/909 (68%), Gaps = 9/909 (1%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | ||||| | ||| ||||| | |||| || || |||| || | || | Sbjct 6971343 ATTCTCTGTTGGATTTGACATCACTCCCATTCTCTGATTCTCGCTTACTC-TCTTCTCAA 6971401 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || |||||||| || || ||||| |||| ||||||||| ||| ||||| | ||| | Sbjct 6971402 AGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTT 6971461 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | | || | ||| | | ||||||||| ||||| || || |||| Sbjct 6971462 TGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACT 6971521 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||| ||| |||||||| || || || | ||| || | || | || | |||| Sbjct 6971522 GCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACT 6971581 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| |||||| |||| |||| | |||||| | ||| | || || ||| | Sbjct 6971582 CCTGTTCTATCCTAACTGCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGT 6971641 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 | || | ||||| ||||| | || | ||| ||||| || ||||| || ||||| || | Sbjct 6971642 GCAACAGGTGTTTGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAA 6971701 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | |||||||| ||||| || | || ||||||| ||||||||| || | ||| ||||||| Sbjct 6971702 TAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAG 6971761 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| ||||| |||||||| || || ||||| || ||||| ||||| || | ||||| Sbjct 6971762 ACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTC 6971821 Query 11787 CATAT--ACCTTGTTGCTAGATA-TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843 ||||| | ||| || | | |||| ||||||||| || ||||| || || | Sbjct 6971822 CATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACAC 6971881 Query 11844 ATTCCATTGTTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATA 11901 | ||| || || || || || || | | ||| ||||| | |||| | | || Sbjct 6971882 AAGGCATCGTCTCAATGGCATTGAAGAGAA--ATTCCCTTTCTTTGGAATCTTTAATGTA 6971939 Query 11902 TGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCC 11961 || || || | | |||||||||||| ||||| || |||||||| || ||||| || || Sbjct 6971940 AGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCC 6971999 Query 11962 ATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTC 12021 ||||||||| | ||||| | | ||| || || ||| | ||| | || || || Sbjct 6972000 ATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTC 6972059 Query 12022 ATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC 12081 |||||| || |||||||| | |||||| || || || | ||| ||||| ||| | || Sbjct 6972060 ATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTC 6972119 Query 12082 GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGT 12141 || | | ||||| | | | || || || | || || || ||| | || Sbjct 6972120 CTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGT 6972179 Query 12142 CCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAA 12201 |||||| ||| | | || |||||||| | ||| |||||||| || | ||||| || Sbjct 6972180 CCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 6972239 Query 12202 AATAACGAA 12210 || || || Sbjct 6972240 GATGACAAA 6972248 >seq608 Length=3558542 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || || ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2088483 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 2088482 CCACCACCCTTTCCCC 2088467 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || || Sbjct 2083354 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 2083295 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | |||||| ||| Sbjct 2083294 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACTTCC 2083249 >seq13960 Length=3940437 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || ||||| ||||||||| Sbjct 2049915 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2049974 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||||| |||| || || ||||||||||| || || || || | Sbjct 2049975 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2050034 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 2050035 CTGTTTCTTATACCAT 2050050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468436606062960