Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq10366 140 3e-28 seq646 125 6e-24 seq10734 109 5e-19 seq7053 105 6e-18 seq6415 100 2e-16 seq9639 98.7 8e-16 >seq10366 Length=3198051 Score = 140 bits (154), Expect = 3e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| ||||||| || || || |||||||||||||| ||||| || | Sbjct 2454632 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGG 2454573 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| ||||||| |||||||||||||||||| Sbjct 2454572 GCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCA 2454513 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 ||||||| ||||| || | |||| || || ||||| ||||| | | ||| || | || Sbjct 2454512 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGAGG 2454453 Query 21169 GG 21170 || Sbjct 2454452 GG 2454451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 |||| || ||||||||||| ||||||||||| || || ||||| || | ||| || || Sbjct 2452260 TGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCTAAATCCCCTTCAG 2452201 Query 21340 GGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399 | || ||||||| | |||| ||| | |||||||||| || |||||||||| Sbjct 2452200 CTCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTT 2452141 Query 21400 TTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCC 21440 | || || | |||||||| | | || |||||| ||| Sbjct 2452140 TCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 2452100 >seq646 Length=687 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20951 GTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGAT 21010 ||| |||||||| | ||| ||||| || || || || ||||||| ||||| || |||| Sbjct 208 GTGCGCGTCACCGAGGGTATGCACGAACTCGCCGGGCTTCAGGCCAGTGACCTGCGCGAC 267 Query 21011 CAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070 || ||||| ||||| ||| |||||||| || || || |||||| || || || Sbjct 268 CATCATGGTCAGCAGGGCATAGGACGCGATGTTGAAGGGCACGCCGAGGAACACATCCGC 327 Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAAC 21130 || | |||||| ||||||||||||||| ||| || ||||| |||||| ||| Sbjct 328 CGAGCGCTGGTAGAGCTGGCAGGACAGCCGGCCCTTGGCGACGTAGAACTGAAACAGGCA 387 Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179 |||||| || || || |||||| ||| || || || ||||| ||| Sbjct 388 GTGACAGGGCGGCAGCGCCATCTTGTCGACATCGGCCGGATTCCAGGCG 436 >seq10734 Length=9239 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20951 GTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGAT 21010 ||| || || |||| |||||||| ||||| ||| | |||||| ||| | || || | Sbjct 1843 GTGCGCATCGCCCAGCGTGTGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 1784 Query 21011 CAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070 || | ||||| || ||||||||||||||||| ||||| || |||||| |||||| | Sbjct 1783 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACTCCGAGGAAGATGTCGCC 1724 Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAAC 21130 | | |||||||||||||||| |||| || ||||||| ||||| ||| Sbjct 1723 GCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 1664 Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGC 21180 ||| || || || |||||| | | ||| || | |||||| |||| Sbjct 1663 GTGGCACGGCATCAGCGCCATCTGAGAGAGCTCGCCCACGTTCCAGGCGC 1614 >seq7053 Length=464797 Score = 105 bits (116), Expect = 6e-18 Identities = 175/249 (70%), Gaps = 9/249 (4%) Strand=Plus/Plus Query 20952 TGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATC 21011 || |||||||||| || || || || || ||||| ||||||||||||| || || | | Sbjct 70278 TGCGCGTCACCCAGCGTATGAACGAAATCACCCGGCTTCAGGCCCGTGACCTGCGCCACC 70337 Query 21012 AGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCG 21071 | ||||| || || ||| ||||||||| ||||| || |||||| || ||||| Sbjct 70338 ATCAGTGTCAGCAGCGCATAGGAGGCGATGTTGAACGGCACGCCGAGGAAGATATCGGCA 70397 Query 21072 GACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACG 21131 || | ||| || |||||||||||||||| || | || || ||||| ||| | Sbjct 70398 GAGCGCTGATAGAGCTGGCAGGACAGCTTTCCATCGGAAACATAGAACTGGAACAGGCAG 70457 Query 21132 TGACAAGGAGGGAGAGCCA-TCCG--CGCGAGGTCCGCGGGGTTCCACGCGCACATAACG 21188 ||||| || || | |||| | || | | || ||| ||||||||||| | |||| Sbjct 70458 TGACAGGGCGGCAACGCCATTTCGTCCACCAG---CGCCGGGTTCCACGC---CGAAACG 70511 Query 21189 ATGCGCCGA 21197 ||| | ||| Sbjct 70512 ATGTGACGA 70520 >seq6415 Length=247467 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20951 GTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGAT 21010 ||||||||| || |||||||| || || || ||||| |||||| ||| | |||| Sbjct 53532 GTGGGCGTCGCCGAAGGTGTGGACGAACTCGCCCGGCTCCAGGCCGACGACCTTGGCGAC 53473 Query 21011 CAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070 || ||||| ||||||||| ||||||||| ||||| ||||| | | || |||||| Sbjct 53472 CATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACCCCTAAGAACACGTCGGC 53413 Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAAC 21130 | | || || ||||||||| ||||| || || ||| | ||||| ||| Sbjct 53412 GCTGCGTTGATAGAGCTGGCAGCTCAGCTTTCCGTCCGCGACGAAGAACTGGAACAGGCA 53353 Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 ||| || || || || ||||| ||| || ||||||||||| || Sbjct 53352 GTGGCAGGGCGGCAGGGCCATGTCGTCGACATCGGCGGGGTTCCAGGC 53305 >seq9639 Length=103419 Score = 98.7 bits (108), Expect = 8e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 21018 GTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTC 21077 ||||| || ||||||||||||||||| || || || || ||| ||||| ||| | | Sbjct 3798 GTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAGATGTCCGCGCTGCGC 3857 Query 21078 TGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAA 21137 ||||||||||||||| |||| || |||||||| ||||| | || |||| || Sbjct 3858 TGGTACAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGGAAGAAGGCGTGGCAG 3917 Query 21138 GGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCG 21196 || ||| |||||| ||| ||||| || |||||| |||| | | |||||| || Sbjct 3918 GGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTGACGATGATGCGGCG 3976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427697489602320