Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq10366 140 3e-28
seq646 125 6e-24
seq10734 109 5e-19
seq7053 105 6e-18
seq6415 100 2e-16
seq9639 98.7 8e-16
>seq10366
Length=3198051
Score = 140 bits (154), Expect = 3e-28
Identities = 140/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||| |||||| ||| ||||||| || || || |||||||||||||| ||||| || |
Sbjct 2454632 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGG 2454573
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | |||| ||||||| ||||||||||||||||||
Sbjct 2454572 GCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCA 2454513
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168
||||||| ||||| || | |||| || || ||||| ||||| | | ||| || | ||
Sbjct 2454512 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGAGG 2454453
Query 21169 GG 21170
||
Sbjct 2454452 GG 2454451
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339
|||| || ||||||||||| ||||||||||| || || ||||| || | ||| || ||
Sbjct 2452260 TGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCTAAATCCCCTTCAG 2452201
Query 21340 GGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399
| || ||||||| | |||| ||| | |||||||||| || ||||||||||
Sbjct 2452200 CTCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTT 2452141
Query 21400 TTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCC 21440
| || || | |||||||| | | || |||||| |||
Sbjct 2452140 TCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 2452100
>seq646
Length=687
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 20951 GTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGAT 21010
||| |||||||| | ||| ||||| || || || || ||||||| ||||| || ||||
Sbjct 208 GTGCGCGTCACCGAGGGTATGCACGAACTCGCCGGGCTTCAGGCCAGTGACCTGCGCGAC 267
Query 21011 CAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070
|| ||||| ||||| ||| |||||||| || || || |||||| || || ||
Sbjct 268 CATCATGGTCAGCAGGGCATAGGACGCGATGTTGAAGGGCACGCCGAGGAACACATCCGC 327
Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAAC 21130
|| | |||||| ||||||||||||||| ||| || ||||| |||||| |||
Sbjct 328 CGAGCGCTGGTAGAGCTGGCAGGACAGCCGGCCCTTGGCGACGTAGAACTGAAACAGGCA 387
Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179
|||||| || || || |||||| ||| || || || ||||| |||
Sbjct 388 GTGACAGGGCGGCAGCGCCATCTTGTCGACATCGGCCGGATTCCAGGCG 436
>seq10734
Length=9239
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 20951 GTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGAT 21010
||| || || |||| |||||||| ||||| ||| | |||||| ||| | || || |
Sbjct 1843 GTGCGCATCGCCCAGCGTGTGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 1784
Query 21011 CAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070
|| | ||||| || ||||||||||||||||| ||||| || |||||| |||||| |
Sbjct 1783 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACTCCGAGGAAGATGTCGCC 1724
Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAAC 21130
| | |||||||||||||||| |||| || ||||||| ||||| |||
Sbjct 1723 GCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 1664
Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGC 21180
||| || || || |||||| | | ||| || | |||||| ||||
Sbjct 1663 GTGGCACGGCATCAGCGCCATCTGAGAGAGCTCGCCCACGTTCCAGGCGC 1614
>seq7053
Length=464797
Score = 105 bits (116), Expect = 6e-18
Identities = 175/249 (70%), Gaps = 9/249 (4%)
Strand=Plus/Plus
Query 20952 TGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATC 21011
|| |||||||||| || || || || || ||||| ||||||||||||| || || | |
Sbjct 70278 TGCGCGTCACCCAGCGTATGAACGAAATCACCCGGCTTCAGGCCCGTGACCTGCGCCACC 70337
Query 21012 AGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCG 21071
| ||||| || || ||| ||||||||| ||||| || |||||| || |||||
Sbjct 70338 ATCAGTGTCAGCAGCGCATAGGAGGCGATGTTGAACGGCACGCCGAGGAAGATATCGGCA 70397
Query 21072 GACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACG 21131
|| | ||| || |||||||||||||||| || | || || ||||| ||| |
Sbjct 70398 GAGCGCTGATAGAGCTGGCAGGACAGCTTTCCATCGGAAACATAGAACTGGAACAGGCAG 70457
Query 21132 TGACAAGGAGGGAGAGCCA-TCCG--CGCGAGGTCCGCGGGGTTCCACGCGCACATAACG 21188
||||| || || | |||| | || | | || ||| ||||||||||| | ||||
Sbjct 70458 TGACAGGGCGGCAACGCCATTTCGTCCACCAG---CGCCGGGTTCCACGC---CGAAACG 70511
Query 21189 ATGCGCCGA 21197
||| | |||
Sbjct 70512 ATGTGACGA 70520
>seq6415
Length=247467
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 20951 GTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGAT 21010
||||||||| || |||||||| || || || ||||| |||||| ||| | ||||
Sbjct 53532 GTGGGCGTCGCCGAAGGTGTGGACGAACTCGCCCGGCTCCAGGCCGACGACCTTGGCGAC 53473
Query 21011 CAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070
|| ||||| ||||||||| ||||||||| ||||| ||||| | | || ||||||
Sbjct 53472 CATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACCCCTAAGAACACGTCGGC 53413
Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAAC 21130
| | || || ||||||||| ||||| || || ||| | ||||| |||
Sbjct 53412 GCTGCGTTGATAGAGCTGGCAGCTCAGCTTTCCGTCCGCGACGAAGAACTGGAACAGGCA 53353
Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178
||| || || || || ||||| ||| || ||||||||||| ||
Sbjct 53352 GTGGCAGGGCGGCAGGGCCATGTCGTCGACATCGGCGGGGTTCCAGGC 53305
>seq9639
Length=103419
Score = 98.7 bits (108), Expect = 8e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 21018 GTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTC 21077
||||| || ||||||||||||||||| || || || || ||| ||||| ||| | |
Sbjct 3798 GTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAGATGTCCGCGCTGCGC 3857
Query 21078 TGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAA 21137
||||||||||||||| |||| || |||||||| ||||| | || |||| ||
Sbjct 3858 TGGTACAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGGAAGAAGGCGTGGCAG 3917
Query 21138 GGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCG 21196
|| ||| |||||| ||| ||||| || |||||| |||| | | |||||| ||
Sbjct 3918 GGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTGACGATGATGCGGCG 3976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427697489602320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |