Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq7304 154 3e-33 >seq7304 Length=19908 Score = 154 bits (170), Expect = 3e-33 Identities = 546/834 (65%), Gaps = 28/834 (3%) Strand=Plus/Minus Query 758 TGTTGCCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACGCTGGAACCGT 817 ||||||| ||||| || || ||||||||| | || || ||| | | || || || | Sbjct 14382 TGTTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTAAGACTAGAGCCTT 14323 Query 818 GGCAGCTCTTTGTGATCTGCT-GTGCGTTTGGCTGGGTCAATAAA--GGCTCCCGGCTGC 874 ||||| |||| || |||| || | || |||||||| |||| || | || | Sbjct 14322 GGCAGAAATTTGGAAT-TGCTTGTACTTTCGGCTGGGTTCGTAAAAAGGATG--GGTACC 14266 Query 875 GCCGCTTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTG 934 | || ||||||||| ||| ||||| || ||||| || || || || ||||| | | Sbjct 14265 GTCGATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCAGCAATTGCAG 14206 Query 935 CCGGTGTTGCCCTGTATTGTTTTGCCTGTGATAACGAGTTCGGCGCGGAAGTGTATTCCG 994 | |||||||| || || ||||| |||| || | ||| || || || | | Sbjct 14205 CTGGTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAGGTTTACGCTG 14146 Query 995 GTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAAC 1054 |||| || || || ||||| || |||||||| ||| || || ||| | ||| | Sbjct 14145 GTGCGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTAATGGCAGTGC 14086 Query 1055 GCACACCCA----TGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT-CAAACATGAA 1109 | |||| || ||| || ||| || || || | || || || | |||| Sbjct 14085 GTTCACCTGATTTTGTTGA-GGCAGCT---GGAATACAGATAAATGCTGGCAGTCTTGAA 14030 Query 1110 CCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGCAACCCCGGTGATGGTTCATC 1169 || || |||||| | |||||| | | | ||| | || |||||| || Sbjct 14029 ATA-CCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGACAGTC 13971 Query 1170 ACCCCACTGTGCCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGCTTTATACCAC 1229 ||| || ||||| | |||||||||||||||||||| || |||| | || ||| Sbjct 13970 ACCGCATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAATGCACAGTACGACAC 13911 Query 1230 AATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGG 1289 |||| || || ||||||||||| ||||||||| |||||| | || || || | || Sbjct 13910 TATGCAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGG 13851 Query 1290 GTACAACATTGAGGGGCCGTGCTACGACAAGCG-GCGGGAAGTCATCGAGATGCTCAACG 1348 | ||| ||||| || || || ||||| ||| | | ||| || ||| | | Sbjct 13850 TTTCAATATTGATGGTCCTTGTCACGACTTGCGTTTACGTATTCA-AGACATGTTGCTTG 13792 Query 1349 GCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACT 1408 | | ||||| | ||||| ||||| || |||| ||| ||||||| ||||| || | Sbjct 13791 GTACAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGAGT 13732 Query 1409 GGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCG 1468 |||| || || |||| | | || |||||||||||| | || || |||||| ||| Sbjct 13731 GGACAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTTTATGGCG 13672 Query 1469 AATTTTTGTTAAGTCAGCAGCAGCGT---GCGAAAAATAACGCCCGTCT-GGCAAACGTC 1524 | || || ||||| ||||| ||| || | |||||| || ||| | |||| | Sbjct 13671 A--TTACCTTGAGTCA-CAGCAACGTAAGGCAATAAATAA--TCCATCTCGTCAAAATAC 13617 Query 1525 -TTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAA 1577 || || || || || | || || ||||| || |||||| | ||| ||||| Sbjct 13616 ATTCAAGACTAAGCATTTAAACATTTGGGTTTCTGCGCGTGAGCAGTACTTCAA 13563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118494006445288