Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_003444.1
Length=37074
Score E
Sequences producing significant alignments: (Bits) Value
seq7304 154 3e-33
>seq7304
Length=19908
Score = 154 bits (170), Expect = 3e-33
Identities = 546/834 (65%), Gaps = 28/834 (3%)
Strand=Plus/Minus
Query 758 TGTTGCCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACGCTGGAACCGT 817
||||||| ||||| || || ||||||||| | || || ||| | | || || || |
Sbjct 14382 TGTTGCCCCACACAAAAGGTGAGTGGGCAATGAAAAGAATGAAGCTAAGACTAGAGCCTT 14323
Query 818 GGCAGCTCTTTGTGATCTGCT-GTGCGTTTGGCTGGGTCAATAAA--GGCTCCCGGCTGC 874
||||| |||| || |||| || | || |||||||| |||| || | || |
Sbjct 14322 GGCAGAAATTTGGAAT-TGCTTGTACTTTCGGCTGGGTTCGTAAAAAGGATG--GGTACC 14266
Query 875 GCCGCTTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTG 934
| || ||||||||| ||| ||||| || ||||| || || || || ||||| | |
Sbjct 14265 GTCGATTCAGGGAGTCTTATTGGGAAATTCCTCGTAAAAATGGTAAGTCAGCAATTGCAG 14206
Query 935 CCGGTGTTGCCCTGTATTGTTTTGCCTGTGATAACGAGTTCGGCGCGGAAGTGTATTCCG 994
| |||||||| || || ||||| |||| || | ||| || || || | |
Sbjct 14205 CTGGTGTTGCTCTCAATATGTTTGCTAATGATGGTGAATCGGGCAGCGAGGTTTACGCTG 14146
Query 995 GTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAAC 1054
|||| || || || ||||| || |||||||| ||| || || ||| | ||| |
Sbjct 14145 GTGCGACCACCGAAAAACAAGCATGGGAAGTATTTAAACCAGCTCGATTAATGGCAGTGC 14086
Query 1055 GCACACCCA----TGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT-CAAACATGAA 1109
| |||| || ||| || ||| || || || | || || || | ||||
Sbjct 14085 GTTCACCTGATTTTGTTGA-GGCAGCT---GGAATACAGATAAATGCTGGCAGTCTTGAA 14030
Query 1110 CCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGCAACCCCGGTGATGGTTCATC 1169
|| || |||||| | |||||| | | | ||| | || |||||| ||
Sbjct 14029 ATA-CCTGAAGATGGCTCATTATTTGAAACTATTGTAGGCGATCCGCCTGATGGACAGTC 13971
Query 1170 ACCCCACTGTGCCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGCTTTATACCAC 1229
||| || ||||| | |||||||||||||||||||| || |||| | || |||
Sbjct 13970 ACCGCATTGTGCAATTATTGATGAATATCACGAGCATCAAACAAATGCACAGTACGACAC 13911
Query 1230 AATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGG 1289
|||| || || ||||||||||| ||||||||| |||||| | || || || | ||
Sbjct 13910 TATGCAAACGGGTATGGGGGCGCGTCGTCAGCCATTGATGTTTGTTATTACAACATCAGG 13851
Query 1290 GTACAACATTGAGGGGCCGTGCTACGACAAGCG-GCGGGAAGTCATCGAGATGCTCAACG 1348
| ||| ||||| || || || ||||| ||| | | ||| || ||| | |
Sbjct 13850 TTTCAATATTGATGGTCCTTGTCACGACTTGCGTTTACGTATTCA-AGACATGTTGCTTG 13792
Query 1349 GCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACT 1408
| | ||||| | ||||| ||||| || |||| ||| ||||||| ||||| || |
Sbjct 13791 GTACAGTGCCAGATGATGAGCTGTTTGGATATATCTGGACCATTGATGAGGGTGATGAGT 13732
Query 1409 GGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCG 1468
|||| || || |||| | | || |||||||||||| | || || |||||| |||
Sbjct 13731 GGACAGATCCTAAGGTATTAGCCAAGGCCAATCCAAATTACGATGTTTCTGTTTATGGCG 13672
Query 1469 AATTTTTGTTAAGTCAGCAGCAGCGT---GCGAAAAATAACGCCCGTCT-GGCAAACGTC 1524
| || || ||||| ||||| ||| || | |||||| || ||| | |||| |
Sbjct 13671 A--TTACCTTGAGTCA-CAGCAACGTAAGGCAATAAATAA--TCCATCTCGTCAAAATAC 13617
Query 1525 -TTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAA 1577
|| || || || || | || || ||||| || |||||| | ||| |||||
Sbjct 13616 ATTCAAGACTAAGCATTTAAACATTTGGGTTTCTGCGCGTGAGCAGTACTTCAA 13563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118494006445288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |