Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 122 6e-23
seq7661 84.2 2e-11
>seq8995
Length=8301158
Score = 122 bits (134), Expect = 6e-23
Identities = 381/575 (66%), Gaps = 39/575 (7%)
Strand=Plus/Minus
Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404
||||| ||||| || | || || |||||||| | |||||||||||| ||| | ||
Sbjct 6972209 ATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGAC 6972150
Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGT---TCATGTCTCACATA 22461
| | || ||| ||| |||| || ||||| || | | || || || |
Sbjct 6972149 ATTCAGCACTGG---GAAGCCCTGA---AGCCTGAGGAGAGATATTTTATTTCCCATGTG 6972096
Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTT 22517
||||| ||||||||| ||| |||||||| ||| || ||| | ||| || |||
Sbjct 6972095 CTGGCTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTT 6972039
Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577
|| || ||| || | ||| | || || ||||||||| || || | || ||
Sbjct 6972038 AGCCAA-GAAGTTCAG---ATTACCGAGGCTCCTTGTTTCTATGGCTTCCAAATTGCCAT 6971983
Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG-- 22635
|||||| |||||| |||||||||||| || || ||| ||| | | ||||||
Sbjct 6971982 GGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACAT---TAAAGATTC 6971926
Query 22636 --AATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691
|| ||| || | |||| || ||| ||||| ||||| || |||||
Sbjct 6971925 CAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGC 6971866
Query 22692 ACAGTGGGC--TGCACAATGG-CTGAATGCCACACATAAG-TCTATC-GCAACACGTCTC 22746
| | ||||| ||| | ||| ||| | ||| | ||| | || | | |||| |
Sbjct 6971865 AGATTGGGCCTTGCGC--TGGACTG---GGGACAAAGAAGCTACATATGGAGAACGTGTG 6971811
Query 22747 TTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGG 22806
| |||||||| || || |||||| || | ||||| || || |||||| | |||||||||
Sbjct 6971810 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGG 6971751
Query 22807 CTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866
|| |||||||| || ||||| || | |||||||||| || | |||||| | ||
Sbjct 6971750 CTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAT 6971691
Query 22867 GAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901
|| ||| | |||||||||||| | || || ||||
Sbjct 6971690 GAGGGTTTGCACTGTGACTTTACCTGCCTGATGTT 6971656
Score = 107 bits (118), Expect = 1e-18
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809
|||||||| || || |||||| || | ||||| || || |||||| | |||||||||||
Sbjct 6968939 GCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGCTC 6968880
Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869
|||||||| || ||||| || | |||||||||| || | |||||| | || ||
Sbjct 6968879 AAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAG 6968820
Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901
||| | |||||||||||| | || || ||||
Sbjct 6968819 GGTTTGCACTGTGACTTTACCTGCCTGATGTT 6968788
>seq7661
Length=1898141
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809
|||||||| || || |||||| || | ||||| || || |||||| | |||||||||||
Sbjct 818479 GCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGCTC 818538
Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868
|||||||| || ||||| || | |||||||||| || | |||||| | || ||
Sbjct 818539 AAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGA 818597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356168219890777
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |