Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq8995 122 6e-23 seq7661 84.2 2e-11 >seq8995 Length=8301158 Score = 122 bits (134), Expect = 6e-23 Identities = 381/575 (66%), Gaps = 39/575 (7%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| ||||| || | || || |||||||| | |||||||||||| ||| | || Sbjct 6972209 ATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGAC 6972150 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGT---TCATGTCTCACATA 22461 | | || ||| ||| |||| || ||||| || | | || || || | Sbjct 6972149 ATTCAGCACTGG---GAAGCCCTGA---AGCCTGAGGAGAGATATTTTATTTCCCATGTG 6972096 Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTT 22517 ||||| ||||||||| ||| |||||||| ||| || ||| | ||| || ||| Sbjct 6972095 CTGGCTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTT 6972039 Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577 || || ||| || | ||| | || || ||||||||| || || | || || Sbjct 6972038 AGCCAA-GAAGTTCAG---ATTACCGAGGCTCCTTGTTTCTATGGCTTCCAAATTGCCAT 6971983 Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG-- 22635 |||||| |||||| |||||||||||| || || ||| ||| | | |||||| Sbjct 6971982 GGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACAT---TAAAGATTC 6971926 Query 22636 --AATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691 || ||| || | |||| || ||| ||||| ||||| || ||||| Sbjct 6971925 CAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGC 6971866 Query 22692 ACAGTGGGC--TGCACAATGG-CTGAATGCCACACATAAG-TCTATC-GCAACACGTCTC 22746 | | ||||| ||| | ||| ||| | ||| | ||| | || | | |||| | Sbjct 6971865 AGATTGGGCCTTGCGC--TGGACTG---GGGACAAAGAAGCTACATATGGAGAACGTGTG 6971811 Query 22747 TTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGG 22806 | |||||||| || || |||||| || | ||||| || || |||||| | ||||||||| Sbjct 6971810 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGG 6971751 Query 22807 CTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866 || |||||||| || ||||| || | |||||||||| || | |||||| | || Sbjct 6971750 CTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAT 6971691 Query 22867 GAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 || ||| | |||||||||||| | || || |||| Sbjct 6971690 GAGGGTTTGCACTGTGACTTTACCTGCCTGATGTT 6971656 Score = 107 bits (118), Expect = 1e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || || |||||| || | ||||| || || |||||| | ||||||||||| Sbjct 6968939 GCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGCTC 6968880 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 |||||||| || ||||| || | |||||||||| || | |||||| | || || Sbjct 6968879 AAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAG 6968820 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 ||| | |||||||||||| | || || |||| Sbjct 6968819 GGTTTGCACTGTGACTTTACCTGCCTGATGTT 6968788 >seq7661 Length=1898141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || || |||||| || | ||||| || || |||||| | ||||||||||| Sbjct 818479 GCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGGCTC 818538 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||||| || ||||| || | |||||||||| || | |||||| | || || Sbjct 818539 AAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGA 818597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356168219890777