Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 434 2e-116
seq13960 131 2e-25
seq7661 129 8e-25
seq11415 113 6e-20
seq12849 109 8e-19
seq608 98.7 1e-15
>seq8995
Length=8301158
Score = 434 bits (480), Expect = 2e-116
Identities = 632/892 (71%), Gaps = 7/892 (1%)
Strand=Plus/Plus
Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713
||||| ||||||||| | || | || | || | || || || || ||||| || ||
Sbjct 6971359 GACATCACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6971418
Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773
|||| ||| ||||||||||| || ||||||||||| || || ||| || ||||
Sbjct 6971419 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6971478
Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833
|||| || || | |||||| || || || || || || ||||||| |||
Sbjct 6971479 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6971538
Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893
||||| || || || || || || || ||| | ||||| || || ||||| || ||
Sbjct 6971539 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6971598
Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953
|||| || || | || | | || ||| ||||| | ||||| |||
Sbjct 6971599 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAAC 6971658
Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013
|||| || | || || ||||||| |||||| ||||| ||||| ||||| |||||||||
Sbjct 6971659 ATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 6971718
Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073
||||| || ||||| || || || || || ||||| ||||| |||||||| || || |||
Sbjct 6971719 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAA 6971778
Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCA 50133
|||||||| ||||| ||||| |||||||| || | | |||||||| || |||
Sbjct 6971779 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATA--TGTAGCTTCTT 6971836
Query 50134 TGTATCCACTTTTG-----AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188
||| ||| | | |||||||| |||||||| || |||||||||||||| || |
Sbjct 6971837 TGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAA 6971896
Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248
||||||| |||||| | | |||| || |||||||| ||||| || || | ||||
Sbjct 6971897 TGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGAC 6971956
Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308
|||||||||| ||||| |||||||| ||||| || || || || |||||||| |||||
Sbjct 6971957 TATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCT 6972016
Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368
|||||||||| |||||| | ||| || || | || |||||||| ||||| || ||||
Sbjct 6972017 CGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 6972076
Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428
| |||||||| || |||| ||||| ||||||| | | || | || | || |
Sbjct 6972077 TTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTT 6972136
Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488
||| | | || || || || | || || || || |||||||||| || ||||| |
Sbjct 6972137 CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAG 6972196
Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540
| || |||||||| | ||| || ||||| |||| ||| || || || |||||
Sbjct 6972197 CTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248
Score = 262 bits (290), Expect = 6e-65
Identities = 391/554 (71%), Gaps = 7/554 (1%)
Strand=Plus/Plus
Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713
||||| ||||||||| | || || || || || | || || || || ||||| || ||
Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550
Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773
|||| ||| ||||||||||| || ||||||||||| || || ||| || ||||
Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610
Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833
|||| || || | |||||| || || || || || || ||||||| |||
Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670
Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893
||||| || || || || || || || ||| | ||||| || || ||||| || ||
Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730
Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953
|||| || || | || | | || ||| ||||| | ||||| |||
Sbjct 6968731 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAAC 6968790
Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013
|||| || | || || ||||||| |||||| ||||| ||||| ||||| |||||||||
Sbjct 6968791 ATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 6968850
Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073
||||| || ||||| || || || || || ||||| ||||| |||||||| || || |||
Sbjct 6968851 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAA 6968910
Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCA 50133
|||||||| ||||| ||||| |||||||| || | | |||||||| || |||
Sbjct 6968911 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATA--TGTAGCTTCTT 6968968
Query 50134 TGTATCCACTTTTG-----AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188
||| ||| | | |||||||| |||||||| || |||||||||||||| || |
Sbjct 6968969 TGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAA 6969028
Query 50189 TGGCATTAAAGAGA 50202
||||||| ||||||
Sbjct 6969029 TGGCATTGAAGAGA 6969042
>seq13960
Length=3940437
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 2049915 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2049974
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| |||||||||||||| || ||||||||||| || || ||||| || || | | ||||
Sbjct 2049975 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2050034
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 2050035 CTGTTTCTTATACCATA 2050051
Score = 100 bits (110), Expect = 4e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
|| |||||||| || || | || | ||| || ||||| || || || || ||||| |||
Sbjct 2054703 TAGGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCATAA 2054762
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
||||||||||| || |||| |||||| | || || ||| | || ||||| || ||
Sbjct 2054763 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGTAC 2054822
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479
| | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 2054823 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 2054882
Query 79480 TTATTAGA 79487
||||| ||
Sbjct 2054883 TTATTCGA 2054890
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737
|||| |||| ||| || ||||| ||||| | || || ||||| || || || || | |
Sbjct 2074044 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2074103
Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797
|||||||||| || || | ||||| | || || ||| | || || |||| ||| ||||
Sbjct 2074104 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2074163
Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 2074164 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2074209
>seq7661
Length=1898141
Score = 129 bits (142), Expect = 8e-25
Identities = 103/124 (83%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| |||||||||||||| || ||||| || || || || |
Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480
Query 50102 CAAC 50105
| ||
Sbjct 818479 CTAC 818476
Score = 111 bits (122), Expect = 2e-19
Identities = 88/106 (83%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||||| |||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 816929 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 816870
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || || |||||||| ||||||||||||||| ||||||
Sbjct 816869 AATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCT 816824
>seq11415
Length=1221423
Score = 113 bits (124), Expect = 6e-20
Identities = 177/252 (70%), Gaps = 1/252 (0%)
Strand=Plus/Minus
Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762
|||||| || ||||| ||| | || || || || ||||| | | ||||||||
Sbjct 353789 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTAAAACTTCCTC 353730
Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822
| |||||| ||| |||| ||| | | || ||||| || |||| ||| ||| | || ||
Sbjct 353729 TATTTCTGGGTAAAATATCCGTGCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 353670
Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882
| ||| | ||| ||| ||||| || | || || | ||||| |||||||||||
Sbjct 353669 TTCCAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 353610
Query 47883 GTCTATTACACCACCTCCTATATCAATGCCTTTTAGTGACAGTCCAGACCTAGGAGCTAT 47942
||||| |||||| |||||| ||| ||| | || || || ||||| | |||||| |
Sbjct 353609 ATCTATGACACCAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCCAC 353551
Query 47943 TCTACCATAGCA 47954
||| ||||||||
Sbjct 353550 TCTTCCATAGCA 353539
>seq12849
Length=3269951
Score = 109 bits (120), Expect = 8e-19
Identities = 176/252 (70%), Gaps = 1/252 (0%)
Strand=Plus/Minus
Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762
|||||| || ||||| ||| | || || || || ||||| | || ||||||||
Sbjct 3072264 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTTAAACTTCCTC 3072205
Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822
| |||||| ||| |||| | || | | || ||||| || ||| ||| ||| | || ||
Sbjct 3072204 TATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTGAC 3072145
Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882
| ||| | ||| ||| ||||| || | || || | ||||| |||||||||||
Sbjct 3072144 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 3072085
Query 47883 GTCTATTACACCACCTCCTATATCAATGCCTTTTAGTGACAGTCCAGACCTAGGAGCTAT 47942
||||| |||| | |||||| ||| ||| | || || || ||||| | |||||| |
Sbjct 3072084 ATCTATGACACAAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCCAC 3072026
Query 47943 TCTACCATAGCA 47954
||| ||||||||
Sbjct 3072025 TCTTCCATAGCA 3072014
>seq608
Length=3558542
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| ||||| || || || || |||||||| |||||||| ||||| || || | || ||
Sbjct 2088600 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 2088541
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||| ||||| | ||||| || || || ||||| ||||||||||| || ||||||||
Sbjct 2088540 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 2088481
Query 50104 AC 50105
||
Sbjct 2088480 AC 2088479
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
||| ||||| ||||||| || ||||||| ||||| |||||||| ||||| |||||| |
Sbjct 2077432 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGCTTATACATTTTCCAAATGTCAGG 2077373
Query 50517 ATATTGGATTGGGAAAATAACAAA 50540
|| ||||||||||| || |||||
Sbjct 2077372 GTACTGGATTGGGAAGATGACAAA 2077349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718133594876760
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