Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 340 2e-88
seq7661 123 2e-23
>seq8995
Length=8301158
Score = 340 bits (376), Expect = 2e-88
Identities = 636/927 (69%), Gaps = 8/927 (1%)
Strand=Plus/Plus
Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622
|| || || || |||||| | |||| || || ||||| || |||||||||||||| ||
Sbjct 6971356 TTTGACATCACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTC 6971415
Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCA 13682
|| |||||||| |||||||||||||| ||||| |||||| | | || || || |
Sbjct 6971416 CCCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTA 6971475
Query 13683 CAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13742
| || || || | | | |||||| || | ||||| || || || ||| |||
Sbjct 6971476 AAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTG 6971535
Query 13743 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 13802
|||||||| || || || || ||||| | | || | || || | ||||||
Sbjct 6971536 CAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTA 6971595
Query 13803 ACAGCCTCTTTTATAATAATTGTAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTT 13860
|| || | || || || || |||| || ||||| | || ||||
Sbjct 6971596 ACTGCATTGACGATTAT--TTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTT 6971653
Query 13861 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13920
| || || | || | ||| ||||| || | ||||||||||| ||||||||||| || |
Sbjct 6971654 TGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGG 6971713
Query 13921 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACC 13980
|||| || | || ||||||| ||||||||| || | ||| ||||| | ||||| || |
Sbjct 6971714 AAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAAC 6971773
Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14040
|||||||||| || || || ||||||||||| |||| | ||||||||| | | ||||
Sbjct 6971774 CGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTT 6971833
Query 14041 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100
||||| | |||| ||||| || | || || || | | || ||| || |
Sbjct 6971834 CTTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCT 6971893
Query 14101 CAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 14160
|||| ||||| || | | ||||| | ||||| | | | |||||| || ||||| || |
Sbjct 6971894 CAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGA 6971953
Query 14161 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAG 14220
|||||||||||||| |||||||||||||| || || || || ||||| || || ||
Sbjct 6971954 GACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAG 6972013
Query 14221 CTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280
| || | || ||||| | ||| | || |||| |||||||| ||||| ||||
Sbjct 6972014 CCTCGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCAT 6972073
Query 14281 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14340
|||| |||||||| || |||| | | |||||| ||| ||| ||| || ||
Sbjct 6972074 CACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGG 6972133
Query 14341 TTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14399
|| ||| | | || | ||||| ||||| || || || ||| |||||||||| |||
Sbjct 6972134 CTTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCC 6972192
Query 14400 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-T 14458
||||||| |||||||| ||| || || | ||| |||||||| | ||||| |
Sbjct 6972193 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAAGCGG 6972252
Query 14459 CGAAGATGTTTCTTTAAGAATTGGTTC 14485
|| | | ||||| | |||| ||||||
Sbjct 6972253 CGTGGGT-TTTCTCTCAGAAGTGGTTC 6972278
Score = 197 bits (218), Expect = 1e-45
Identities = 381/560 (68%), Gaps = 4/560 (1%)
Strand=Plus/Plus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|| || || |||||| | ||||| || | ||||| || |||||||||||||| || ||
Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685
|||||||| |||||||||||||| ||||| |||||| | | || || || | |
Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610
Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745
|| || || | | | |||||| || | ||||| || || || ||| ||| |||
Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670
Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805
||||| || || || || ||||| | | || | || || | |||||| ||
Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730
Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAA 13863
|| | || || || || |||| || ||||| | || ||||| |
Sbjct 6968731 GCATTGACGATTAT--TTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGA 6968788
Query 13864 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13923
| || | || | ||| ||||| || | ||||||||||| ||||||||||| || ||||
Sbjct 6968789 ACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAA 6968848
Query 13924 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGG 13983
| || | || ||||||| ||||||||| || | ||| ||||| | ||||| || ||||
Sbjct 6968849 ACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGG 6968908
Query 13984 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14043
||||||| || || || ||||||||||| |||| | ||||||||| | | |||| ||
Sbjct 6968909 AAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTT 6968968
Query 14044 TGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14103
||| | |||| ||||| || | || || || | | || ||| || ||||
Sbjct 6968969 TGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAA 6969028
Query 14104 TAGCATTAAATAAATATTCC 14123
| ||||| || | | |||||
Sbjct 6969029 TGGCATTGAAGAGAAATTCC 6969048
>seq7661
Length=1898141
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| ||||||||||| || ||||| || | || ||||||| ||||||||| |
Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| |
Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480
Query 14014 CTATTAATCGTTCTCC 14029
||| | ||||||||
Sbjct 818479 CTACCACACGTTCTCC 818464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479637697200600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |