Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq8995 340 2e-88 seq7661 123 2e-23 >seq8995 Length=8301158 Score = 340 bits (376), Expect = 2e-88 Identities = 636/927 (69%), Gaps = 8/927 (1%) Strand=Plus/Plus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || |||||| | |||| || || ||||| || |||||||||||||| || Sbjct 6971356 TTTGACATCACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTC 6971415 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCA 13682 || |||||||| |||||||||||||| ||||| |||||| | | || || || | Sbjct 6971416 CCCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTA 6971475 Query 13683 CAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13742 | || || || | | | |||||| || | ||||| || || || ||| ||| Sbjct 6971476 AAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTG 6971535 Query 13743 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 13802 |||||||| || || || || ||||| | | || | || || | |||||| Sbjct 6971536 CAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTA 6971595 Query 13803 ACAGCCTCTTTTATAATAATTGTAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTT 13860 || || | || || || || |||| || ||||| | || |||| Sbjct 6971596 ACTGCATTGACGATTAT--TTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTT 6971653 Query 13861 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13920 | || || | || | ||| ||||| || | ||||||||||| ||||||||||| || | Sbjct 6971654 TGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGG 6971713 Query 13921 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACC 13980 |||| || | || ||||||| ||||||||| || | ||| ||||| | ||||| || | Sbjct 6971714 AAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAAC 6971773 Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14040 |||||||||| || || || ||||||||||| |||| | ||||||||| | | |||| Sbjct 6971774 CGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTT 6971833 Query 14041 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100 ||||| | |||| ||||| || | || || || | | || ||| || | Sbjct 6971834 CTTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCT 6971893 Query 14101 CAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 14160 |||| ||||| || | | ||||| | ||||| | | | |||||| || ||||| || | Sbjct 6971894 CAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGA 6971953 Query 14161 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAG 14220 |||||||||||||| |||||||||||||| || || || || ||||| || || || Sbjct 6971954 GACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAG 6972013 Query 14221 CTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 | || | || ||||| | ||| | || |||| |||||||| ||||| |||| Sbjct 6972014 CCTCGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCAT 6972073 Query 14281 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14340 |||| |||||||| || |||| | | |||||| ||| ||| ||| || || Sbjct 6972074 CACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGG 6972133 Query 14341 TTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14399 || ||| | | || | ||||| ||||| || || || ||| |||||||||| ||| Sbjct 6972134 CTTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCC 6972192 Query 14400 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-T 14458 ||||||| |||||||| ||| || || | ||| |||||||| | ||||| | Sbjct 6972193 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAAGCGG 6972252 Query 14459 CGAAGATGTTTCTTTAAGAATTGGTTC 14485 || | | ||||| | |||| |||||| Sbjct 6972253 CGTGGGT-TTTCTCTCAGAAGTGGTTC 6972278 Score = 197 bits (218), Expect = 1e-45 Identities = 381/560 (68%), Gaps = 4/560 (1%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | ||||| || | ||||| || |||||||||||||| || || Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||||||| |||||||||||||| ||||| |||||| | | || || || | | Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || || || | | | |||||| || | ||||| || || || ||| ||| ||| Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || || || ||||| | | || | || || | |||||| || Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAA 13863 || | || || || || |||| || ||||| | || ||||| | Sbjct 6968731 GCATTGACGATTAT--TTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGA 6968788 Query 13864 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13923 | || | || | ||| ||||| || | ||||||||||| ||||||||||| || |||| Sbjct 6968789 ACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAA 6968848 Query 13924 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGG 13983 | || | || ||||||| ||||||||| || | ||| ||||| | ||||| || |||| Sbjct 6968849 ACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGG 6968908 Query 13984 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14043 ||||||| || || || ||||||||||| |||| | ||||||||| | | |||| || Sbjct 6968909 AAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTT 6968968 Query 14044 TGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14103 ||| | |||| ||||| || | || || || | | || ||| || |||| Sbjct 6968969 TGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAA 6969028 Query 14104 TAGCATTAAATAAATATTCC 14123 | ||||| || | | ||||| Sbjct 6969029 TGGCATTGAAGAGAAATTCC 6969048 >seq7661 Length=1898141 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || ||||| || | || ||||||| ||||||||| | Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| | Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 818479 CTACCACACGTTCTCC 818464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479637697200600