Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq8995 320 2e-82 seq7661 120 3e-22 >seq8995 Length=8301158 Score = 320 bits (354), Expect = 2e-82 Identities = 609/895 (68%), Gaps = 4/895 (0%) Strand=Plus/Plus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 || || || || |||||| | |||| || || ||||| || ||||| |||||||| || Sbjct 6971356 TTTGACATCACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTC 6971415 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCA 13470 || |||||||| |||||||||||||| || || |||||| | | || || || | Sbjct 6971416 CCCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTA 6971475 Query 13471 CAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13530 | || || || | | | |||||| || | ||||| || || || ||| ||| Sbjct 6971476 AAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTG 6971535 Query 13531 CAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGAC 13590 |||||||| || || || || ||||| | | || | || || | |||||| Sbjct 6971536 CAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTA 6971595 Query 13591 ACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTA 13650 || || | | || || ||| | | | || ||||| | || ||||| Sbjct 6971596 ACTGCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTG 6971655 Query 13651 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13710 || || | || | ||| ||||| || | ||||||||||| ||||||||||| || ||| Sbjct 6971656 AACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAA 6971715 Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770 || || | || ||||||| ||||||||| || | ||| ||||| | || || || ||| Sbjct 6971716 AACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCG 6971775 Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830 |||||||| || || || ||||||||||| |||| | ||||||||| | | |||| | Sbjct 6971776 GAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCT 6971835 Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890 |||| |||| ||||| || | || || || | | || ||| || || Sbjct 6971836 TTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCA 6971895 Query 13891 ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 13950 || |||||||| | | |||| | ||||| | | | |||||| || ||||| || | Sbjct 6971896 ATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGA 6971955 Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 |||||||||||||| ||||||||||| || || || || || ||||| ||||| ||| Sbjct 6971956 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCC 6972015 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 || | || || || | ||| | || ||||||||||||| || || |||||| Sbjct 6972016 TCGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCA 6972075 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130 || |||||||| || |||| | | |||||| ||| ||| ||| || || | Sbjct 6972076 CTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCT 6972135 Query 14131 TTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14188 | ||| | ||| || ||||| ||||| || || || ||| |||||||||| ||| Sbjct 6972136 TCCCAGT--GCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCT 6972193 Query 14189 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 ||||||| |||||||| ||| || || | ||| |||||||| | ||||| Sbjct 6972194 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248 Score = 187 bits (206), Expect = 2e-42 Identities = 330/481 (69%), Gaps = 0/481 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | ||||| || | ||||| || ||||| |||||||| || || Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| |||||||||||||| || || |||||| | | || || || | | Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || || || | | | |||||| || | ||||| || || || ||| ||| ||| Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || || ||||| | | || | || || | |||||| || Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653 || | | || || ||| | | | || ||||| | || ||||| || Sbjct 6968731 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAAC 6968790 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 || | || | ||| ||||| || | ||||||||||| ||||||||||| || ||||| Sbjct 6968791 ATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 6968850 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 || | || ||||||| ||||||||| || | ||| ||||| | || || || |||||| Sbjct 6968851 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAA 6968910 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 ||||| || || || ||||||||||| |||| | ||||||||| | | |||| |||| Sbjct 6968911 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 6968970 Query 13834 T 13834 | Sbjct 6968971 T 6968971 >seq7661 Length=1898141 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || ||||| || | || ||||||| ||||||||| | Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || ||||||||||| || || || ||||||||||| | Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 818479 CTACCACACGTTCTCC 818464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478498711640760