Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 320 2e-82
seq7661 120 3e-22
>seq8995
Length=8301158
Score = 320 bits (354), Expect = 2e-82
Identities = 609/895 (68%), Gaps = 4/895 (0%)
Strand=Plus/Plus
Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410
|| || || || |||||| | |||| || || ||||| || ||||| |||||||| ||
Sbjct 6971356 TTTGACATCACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTC 6971415
Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCA 13470
|| |||||||| |||||||||||||| || || |||||| | | || || || |
Sbjct 6971416 CCCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTA 6971475
Query 13471 CAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13530
| || || || | | | |||||| || | ||||| || || || ||| |||
Sbjct 6971476 AAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTG 6971535
Query 13531 CAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGAC 13590
|||||||| || || || || ||||| | | || | || || | ||||||
Sbjct 6971536 CAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTA 6971595
Query 13591 ACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTA 13650
|| || | | || || ||| | | | || ||||| | || |||||
Sbjct 6971596 ACTGCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTG 6971655
Query 13651 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13710
|| || | || | ||| ||||| || | ||||||||||| ||||||||||| || |||
Sbjct 6971656 AACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAA 6971715
Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770
|| || | || ||||||| ||||||||| || | ||| ||||| | || || || |||
Sbjct 6971716 AACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCG 6971775
Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830
|||||||| || || || ||||||||||| |||| | ||||||||| | | |||| |
Sbjct 6971776 GAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCT 6971835
Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890
|||| |||| ||||| || | || || || | | || ||| || ||
Sbjct 6971836 TTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCA 6971895
Query 13891 ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 13950
|| |||||||| | | |||| | ||||| | | | |||||| || ||||| || |
Sbjct 6971896 ATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGA 6971955
Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010
|||||||||||||| ||||||||||| || || || || || ||||| ||||| |||
Sbjct 6971956 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCC 6972015
Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070
|| | || || || | ||| | || ||||||||||||| || || ||||||
Sbjct 6972016 TCGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCA 6972075
Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130
|| |||||||| || |||| | | |||||| ||| ||| ||| || || |
Sbjct 6972076 CTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCT 6972135
Query 14131 TTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14188
| ||| | ||| || ||||| ||||| || || || ||| |||||||||| |||
Sbjct 6972136 TCCCAGT--GCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCT 6972193
Query 14189 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243
||||||| |||||||| ||| || || | ||| |||||||| | |||||
Sbjct 6972194 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248
Score = 187 bits (206), Expect = 2e-42
Identities = 330/481 (69%), Gaps = 0/481 (0%)
Strand=Plus/Plus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || |||||| | ||||| || | ||||| || ||||| |||||||| || ||
Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473
|||||||| |||||||||||||| || || |||||| | | || || || | |
Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610
Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533
|| || || | | | |||||| || | ||||| || || || ||| ||| |||
Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670
Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593
||||| || || || || ||||| | | || | || || | |||||| ||
Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730
Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653
|| | | || || ||| | | | || ||||| | || ||||| ||
Sbjct 6968731 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAAC 6968790
Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713
|| | || | ||| ||||| || | ||||||||||| ||||||||||| || |||||
Sbjct 6968791 ATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 6968850
Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773
|| | || ||||||| ||||||||| || | ||| ||||| | || || || ||||||
Sbjct 6968851 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAA 6968910
Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833
||||| || || || ||||||||||| |||| | ||||||||| | | |||| ||||
Sbjct 6968911 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 6968970
Query 13834 T 13834
|
Sbjct 6968971 T 6968971
>seq7661
Length=1898141
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||||||||| || ||||| || | || ||||||| ||||||||| |
Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || ||||||||||| || || || ||||||||||| |
Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||||||
Sbjct 818479 CTACCACACGTTCTCC 818464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478498711640760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |