Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 421 9e-113
seq13960 138 2e-27
seq7661 132 6e-26
seq608 107 3e-18
seq11415 91.5 2e-13
seq12849 89.7 7e-13
>seq8995
Length=8301158
Score = 421 bits (466), Expect = 9e-113
Identities = 654/933 (70%), Gaps = 6/933 (1%)
Strand=Plus/Plus
Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775
||| ||||| |||| || | ||| ||| ||| | || ||||| ||||||||| |
Sbjct 6971316 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGATTTGACATCACTCCCATTCT 6971375
Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835
|| | || | || | || || || || |||||||| || |||| ||| ||||||||
Sbjct 6971376 CTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6971435
Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895
||| || ||||||||||| || || ||| || |||| |||| || || |
Sbjct 6971436 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAG 6971495
Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955
||||||||| | ||| || || || ||||||| |||||||| || || || ||
Sbjct 6971496 TCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 6971555
Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015
|| || || ||| | ||||| || || ||||| || || || | || ||
Sbjct 6971556 CACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 6971615
Query 42016 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 42075
||||| | | || ||| | ||| | ||||| ||||||| || | || ||
Sbjct 6971616 CTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTC 6971675
Query 42076 GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 42135
||||||| |||||||||||| ||||| | ||| |||||||||||||| || ||||| ||
Sbjct 6971676 ACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 6971735
Query 42136 GCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTAC 42195
|| || || || ||||| |||||||||||||| || || ||||||||||| ||||| ||
Sbjct 6971736 TCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 6971795
Query 42196 TGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTG 42252
||| |||||||| | | | |||||||| | | | |||| ||||
Sbjct 6971796 TGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAA 6971855
Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312
|||||||| |||||||| || |||||||||||||| || |||||||| |||||| | |
Sbjct 6971856 GGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATTC 6971915
Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372
|||| || |||||||| || || || || | |||||||||||||| ||||| ||
Sbjct 6971916 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTAT 6971975
Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432
|||||| ||||| || || || || |||||||| |||||||||| ||| ||||||
Sbjct 6971976 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTG 6972035
Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492
| ||| || || | || ||||| || ||||| || ||||| |||||||| || ||||
Sbjct 6972036 GCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 6972095
Query 42493 TACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTT 42552
||||| ||||||||| | || || || | | | ||| | | || || ||
Sbjct 6972096 CACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 6972155
Query 42553 AGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612
|| | || || || || | |||||||| || || || || || |||||||| | |||
Sbjct 6972156 GGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCA 6972215
Query 42613 GATATCATGATATTGAATTGGGAAAATAACAAA 42645
|||||||| |||| || || || || |||||
Sbjct 6972216 AATATCATGGTATTCGATAGGAAAGATGACAAA 6972248
Score = 268 bits (296), Expect = 1e-66
Identities = 391/552 (71%), Gaps = 3/552 (1%)
Strand=Plus/Plus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| ||||||||| | || || || || || | || || || || |||||||| ||
Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878
|||| ||| ||||||||||| || ||||||||||| || || ||| || ||||
Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610
Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938
|||| || || | ||||||||| | ||| || || || ||||||| |||
Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670
Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998
||||| || || || || || || || ||| | ||||| || || ||||| || ||
Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730
Query 41999 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 42058
|| | || || ||||| | | || ||| | ||| | ||||| |||
Sbjct 6968731 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAAC 6968790
Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118
|||| || | || || ||||||| |||||||||||| ||||| | ||| |||||||||
Sbjct 6968791 ATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 6968850
Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAA 42178
||||| || ||||| || || || || || ||||| |||||||||||||| || || |||
Sbjct 6968851 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAA 6968910
Query 42179 AAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTG 42235
|||||||| ||||| ||||| |||||||| | | | |||||||| | | | ||
Sbjct 6968911 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 6968970
Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295
|| |||| |||||||| |||||||| || |||||||||||||| || |||
Sbjct 6968971 TCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATG 6969030
Query 42296 GCATTAAAGAGA 42307
||||| ||||||
Sbjct 6969031 GCATTGAAGAGA 6969042
>seq13960
Length=3940437
Score = 138 bits (152), Expect = 2e-27
Identities = 112/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 2049915 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2049974
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | || |
Sbjct 2049975 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2050034
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 2050035 CTGTTTCTTATACCAT 2050050
Score = 102 bits (112), Expect = 1e-16
Identities = 122/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| |||| ||| || ||||| ||||| | || || ||||| || || || || || |
Sbjct 2074044 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2074103
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
|||||||||| || || | ||||| | || || ||| | || || |||| ||| ||||
Sbjct 2074104 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2074163
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 2074164 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2074209
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
|||| || || ||||| || | | | ||| | ||||| || || || || |||||||
Sbjct 2054701 CATAGGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 2054760
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
||||||||||||| || |||| |||||| | || || || || || ||||| || |
Sbjct 2054761 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 2054820
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560
| | | |||||||| || ||||| | ||||| || ||||| || || || | || |
Sbjct 2054821 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 2054880
Query 71561 TCTTATTAGA 71570
||||| ||
Sbjct 2054881 GTTTATTCGA 2054890
>seq7661
Length=1898141
Score = 132 bits (146), Expect = 6e-26
Identities = 102/121 (84%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || |
Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| |||||||||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480
Query 42207 C 42207
|
Sbjct 818479 C 818479
Score = 96.9 bits (106), Expect = 5e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||||| ||| || || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 816929 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 816870
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|| || || || |||||||| |||||||||| ||| ||||||
Sbjct 816869 AATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCT 816824
>seq608
Length=3558542
Score = 107 bits (118), Expect = 3e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
|||||||| || || | || |||||||| |||||||| ||||| || || | || ||
Sbjct 2088600 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 2088541
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207
||||| ||||||| ||||| ||||| || ||||| ||||||||||| || ||||||||
Sbjct 2088540 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 2088482
>seq11415
Length=1221423
Score = 91.5 bits (100), Expect = 2e-13
Identities = 172/252 (68%), Gaps = 1/252 (0%)
Strand=Plus/Minus
Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857
|||||| || ||||| ||| | || || || || ||||| | | ||||| ||
Sbjct 353789 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTAAAACTTCCTC 353730
Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917
| |||||| ||| |||| ||| | | || ||||| || |||| ||| ||| | || ||
Sbjct 353729 TATTTCTGGGTAAAATATCCGTGCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 353670
Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977
| || | ||| ||| ||||| || | || || | ||||| |||||||||||
Sbjct 353669 TTCCAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 353610
Query 39978 GTCTATTACACCGCCTCCTATATCAATACCTTTTAGGGACAGACCAGACCTAGGAGCTAT 40037
||||| ||||| |||||| ||| || | || | || ||||| | |||||| |
Sbjct 353609 ATCTATGACACCAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCCAC 353551
Query 40038 TCTACCATAGCA 40049
||| ||||||||
Sbjct 353550 TCTTCCATAGCA 353539
>seq12849
Length=3269951
Score = 89.7 bits (98), Expect = 7e-13
Identities = 174/253 (69%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857
|||||| || ||||| ||| | || || || || ||||| | || ||||| ||
Sbjct 3072264 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTTAAACTTCCTC 3072205
Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917
| |||||| ||| |||| | || | | || ||||| || ||| ||| ||| | || ||
Sbjct 3072204 TATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTGAC 3072145
Query 39918 ATTGAAAGTACATTTT-CCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 39976
|| ||| | | ||| ||| ||||| || | || || | ||||| ||||||||||
Sbjct 3072144 -TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTT 3072086
Query 39977 CGTCTATTACACCGCCTCCTATATCAATACCTTTTAGGGACAGACCAGACCTAGGAGCTA 40036
| ||||| |||| |||||| ||| || | || | || ||||| | |||||| |
Sbjct 3072085 CATCTATGACACAAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCCA 3072027
Query 40037 TTCTACCATAGCA 40049
||| ||||||||
Sbjct 3072026 CTCTTCCATAGCA 3072014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671012866434840
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