Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8995 421 9e-113 seq13960 138 2e-27 seq7661 132 6e-26 seq608 107 3e-18 seq11415 91.5 2e-13 seq12849 89.7 7e-13 >seq8995 Length=8301158 Score = 421 bits (466), Expect = 9e-113 Identities = 654/933 (70%), Gaps = 6/933 (1%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775 ||| ||||| |||| || | ||| ||| ||| | || ||||| ||||||||| | Sbjct 6971316 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGATTTGACATCACTCCCATTCT 6971375 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || | || | || | || || || || |||||||| || |||| ||| |||||||| Sbjct 6971376 CTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6971435 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| || ||||||||||| || || ||| || |||| |||| || || | Sbjct 6971436 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAG 6971495 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 ||||||||| | ||| || || || ||||||| |||||||| || || || || Sbjct 6971496 TCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 6971555 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015 || || || ||| | ||||| || || ||||| || || || | || || Sbjct 6971556 CACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 6971615 Query 42016 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 42075 ||||| | | || ||| | ||| | ||||| ||||||| || | || || Sbjct 6971616 CTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTC 6971675 Query 42076 GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 42135 ||||||| |||||||||||| ||||| | ||| |||||||||||||| || ||||| || Sbjct 6971676 ACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 6971735 Query 42136 GCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTAC 42195 || || || || ||||| |||||||||||||| || || ||||||||||| ||||| || Sbjct 6971736 TCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 6971795 Query 42196 TGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTG 42252 ||| |||||||| | | | |||||||| | | | |||| |||| Sbjct 6971796 TGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAA 6971855 Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 |||||||| |||||||| || |||||||||||||| || |||||||| |||||| | | Sbjct 6971856 GGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATTC 6971915 Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 |||| || |||||||| || || || || | |||||||||||||| ||||| || Sbjct 6971916 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTAT 6971975 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 |||||| ||||| || || || || |||||||| |||||||||| ||| |||||| Sbjct 6971976 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTG 6972035 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 | ||| || || | || ||||| || ||||| || ||||| |||||||| || |||| Sbjct 6972036 GCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 6972095 Query 42493 TACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTT 42552 ||||| ||||||||| | || || || | | | ||| | | || || || Sbjct 6972096 CACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 6972155 Query 42553 AGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 || | || || || || | |||||||| || || || || || |||||||| | ||| Sbjct 6972156 GGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCA 6972215 Query 42613 GATATCATGATATTGAATTGGGAAAATAACAAA 42645 |||||||| |||| || || || || ||||| Sbjct 6972216 AATATCATGGTATTCGATAGGAAAGATGACAAA 6972248 Score = 268 bits (296), Expect = 1e-66 Identities = 391/552 (71%), Gaps = 3/552 (1%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| ||||||||| | || || || || || | || || || || |||||||| || Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 |||| ||| ||||||||||| || ||||||||||| || || ||| || |||| Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 |||| || || | ||||||||| | ||| || || || ||||||| ||| Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 ||||| || || || || || || || ||| | ||||| || || ||||| || || Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730 Query 41999 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 42058 || | || || ||||| | | || ||| | ||| | ||||| ||| Sbjct 6968731 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAAC 6968790 Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||| || | || || ||||||| |||||||||||| ||||| | ||| ||||||||| Sbjct 6968791 ATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 6968850 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAA 42178 ||||| || ||||| || || || || || ||||| |||||||||||||| || || ||| Sbjct 6968851 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAA 6968910 Query 42179 AAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTG 42235 |||||||| ||||| ||||| |||||||| | | | |||||||| | | | || Sbjct 6968911 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 6968970 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 || |||| |||||||| |||||||| || |||||||||||||| || ||| Sbjct 6968971 TCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATG 6969030 Query 42296 GCATTAAAGAGA 42307 ||||| |||||| Sbjct 6969031 GCATTGAAGAGA 6969042 >seq13960 Length=3940437 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 2049915 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2049974 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 2049975 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2050034 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 2050035 CTGTTTCTTATACCAT 2050050 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || ||||| ||||| | || || ||||| || || || || || | Sbjct 2074044 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2074103 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||||||||| || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 2074104 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2074163 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 2074164 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2074209 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | | ||| | ||||| || || || || ||||||| Sbjct 2054701 CATAGGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 2054760 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||||||||| || |||| |||||| | || || || || || ||||| || | Sbjct 2054761 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 2054820 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | |||||||| || ||||| | ||||| || ||||| || || || | || | Sbjct 2054821 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 2054880 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 2054881 GTTTATTCGA 2054890 >seq7661 Length=1898141 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| |||||||||||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480 Query 42207 C 42207 | Sbjct 818479 C 818479 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| ||| || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 816929 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 816870 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| |||||||||| ||| |||||| Sbjct 816869 AATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCT 816824 >seq608 Length=3558542 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 2088600 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 2088541 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 2088540 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 2088482 >seq11415 Length=1221423 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/252 (68%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 |||||| || ||||| ||| | || || || || ||||| | | ||||| || Sbjct 353789 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTAAAACTTCCTC 353730 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||| ||| |||| ||| | | || ||||| || |||| ||| ||| | || || Sbjct 353729 TATTTCTGGGTAAAATATCCGTGCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 353670 Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977 | || | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 353669 TTCCAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 353610 Query 39978 GTCTATTACACCGCCTCCTATATCAATACCTTTTAGGGACAGACCAGACCTAGGAGCTAT 40037 ||||| ||||| |||||| ||| || | || | || ||||| | |||||| | Sbjct 353609 ATCTATGACACCAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCCAC 353551 Query 40038 TCTACCATAGCA 40049 ||| |||||||| Sbjct 353550 TCTTCCATAGCA 353539 >seq12849 Length=3269951 Score = 89.7 bits (98), Expect = 7e-13 Identities = 174/253 (69%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 |||||| || ||||| ||| | || || || || ||||| | || ||||| || Sbjct 3072264 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTTAAACTTCCTC 3072205 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||| ||| |||| | || | | || ||||| || ||| ||| ||| | || || Sbjct 3072204 TATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTGAC 3072145 Query 39918 ATTGAAAGTACATTTT-CCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 39976 || ||| | | ||| ||| ||||| || | || || | ||||| |||||||||| Sbjct 3072144 -TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTT 3072086 Query 39977 CGTCTATTACACCGCCTCCTATATCAATACCTTTTAGGGACAGACCAGACCTAGGAGCTA 40036 | ||||| |||| |||||| ||| || | || | || ||||| | |||||| | Sbjct 3072085 CATCTATGACACAAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCCA 3072027 Query 40037 TTCTACCATAGCA 40049 ||| |||||||| Sbjct 3072026 CTCTTCCATAGCA 3072014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671012866434840