Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 203 5e-47
>seq8995
Length=8301158
Score = 203 bits (224), Expect = 5e-47
Identities = 578/877 (66%), Gaps = 26/877 (3%)
Strand=Plus/Minus
Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057
||||| ||| || ||||| |||||| | ||||| || || ||| |||| |||||||||
Sbjct 6972239 TTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGG 6972180
Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117
|| | || ||||| || || ||||||||| | | | ||||| | | | ||||
Sbjct 6972179 ACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAG 6972120
Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177
||| || | ||||| || || | |||| |||||||| | ||||| || ||
Sbjct 6972119 ---GAGAGATATTTTATTTCCCATGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTA 6972063
Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236
|| || || || || || || ||||| ||| | ||| | |||| | || ||
Sbjct 6972062 AATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAG-ATTACCGAGGCTCCTTGTTT 6972004
Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296
|| || |||||||| || || ||| | || || |||||||| | || |||||
Sbjct 6972003 CTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGA 6971944
Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355
|| |||||| ||| | ||| | || || ||||| || || || || ||| |||
Sbjct 6971943 CACTTACATTAAAGATTC-CAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGC 6971885
Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415
| | | | || ||||| | |||| | || |||| | ||| | | || | |
Sbjct 6971884 CTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGCTGGACTGGGGACAAAGAAGCTACAT 6971825
Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475
| | || | |||| || || || || || || |||||||||||||| ||| |||||
Sbjct 6971824 ATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTG 6971765
Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535
|| | || || ||||||||||| || ||||| ||||| || || ||| || ||
Sbjct 6971764 CGTCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAAC 6971705
Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595
|||| |||| ||||| | |||||||||||| || || |||| ||| | |
Sbjct 6971704 TTATTAGCAGAGATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTT---CAAACACC 6971648
Query 125596 TGCGTCCCGA--GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGT 125653
|| | | | | | || ||| || | ||||| || | | | | |||| ||
Sbjct 6971647 TGTTGCACAAACCTTC-GAAACAGAGA-GTAAAGGAAATAATCGT------CAATGCAGT 6971596
Query 125654 GAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTG 125713
||||||||||| ||||| || || || |||| || || | | ||||| ||||| ||
Sbjct 6971595 TAGGATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTG 6971536
Query 125714 CAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG 125773
|| | ||| ||||||| ||||| ||||||||| | || || ||| || ||
Sbjct 6971535 CACTTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCTG---GG 6971479
Query 125774 C---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGA 125830
| ||||| ||| ||| | | ||||| ||||| || ||| | || ||||| ||
Sbjct 6971478 CTTTAGCAAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGA 6971419
Query 125831 GGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAG 125867
||| ||||| ||||| || ||||||| || ||||||
Sbjct 6971418 GGGGAAGACTAACTTCTTTGAGAAGAGAGTAAGCGAG 6971382
Score = 143 bits (158), Expect = 4e-29
Identities = 303/447 (68%), Gaps = 19/447 (4%)
Strand=Plus/Minus
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
|||| || || || || || || |||||||||||||| ||| ||||||| | || || |
Sbjct 6968944 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCT 6968885
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547
|||||||||| || ||||| ||||| || || ||| || || |||| |||
Sbjct 6968884 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAG 6968825
Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG- 125606
| ||||| | |||||||||||| || || |||| ||| | ||| | | |
Sbjct 6968824 ATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTT---CAAACACCTGTTGCACAAAC 6968768
Query 125607 -TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665
| | || ||| || | ||||| || | | | | |||| || |||||||||||
Sbjct 6968767 CTTC-GAAACAGAGA-GTAAAGGAAATAATCGT------CAATGCAGTTAGGATAGAACA 6968716
Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725
||||| || || || |||| || || | | ||||| ||||| |||| | |||
Sbjct 6968715 GGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGATGAA 6968656
Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC---CGCAAGAT 125782
||||||| ||||| ||||||||| | || || ||| || ||| ||||| |
Sbjct 6968655 GCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCTG---GGCTTTAGCAAGGT 6968599
Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842
|| ||| | | ||||| ||||| || ||| | || ||||| ||||| ||||| ||
Sbjct 6968598 TTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAA 6968539
Query 125843 CTTTTTCGAGAAGAAGGTCAGCGAGTA 125869
||| || ||||||| || |||||||
Sbjct 6968538 CTTCTTTGAGAAGAGAGTAGGCGAGTA 6968512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740919704868840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |