Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8995 203 5e-47 >seq8995 Length=8301158 Score = 203 bits (224), Expect = 5e-47 Identities = 578/877 (66%), Gaps = 26/877 (3%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| || ||||| |||||| | ||||| || || ||| |||| ||||||||| Sbjct 6972239 TTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGG 6972180 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | || ||||| || || ||||||||| | | | ||||| | | | |||| Sbjct 6972179 ACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAG 6972120 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | ||||| || || | |||| |||||||| | ||||| || || Sbjct 6972119 ---GAGAGATATTTTATTTCCCATGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTA 6972063 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || || || || || ||||| ||| | ||| | |||| | || || Sbjct 6972062 AATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAG-ATTACCGAGGCTCCTTGTTT 6972004 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || |||||||| || || ||| | || || |||||||| | || ||||| Sbjct 6972003 CTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGA 6971944 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || |||||| ||| | ||| | || || ||||| || || || || ||| ||| Sbjct 6971943 CACTTACATTAAAGATTC-CAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGC 6971885 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | || ||||| | |||| | || |||| | ||| | | || | | Sbjct 6971884 CTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGCTGGACTGGGGACAAAGAAGCTACAT 6971825 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || | |||| || || || || || || |||||||||||||| ||| ||||| Sbjct 6971824 ATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTG 6971765 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 || | || || ||||||||||| || ||||| ||||| || || ||| || || Sbjct 6971764 CGTCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAAC 6971705 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595 |||| |||| ||||| | |||||||||||| || || |||| ||| | | Sbjct 6971704 TTATTAGCAGAGATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTT---CAAACACC 6971648 Query 125596 TGCGTCCCGA--GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGT 125653 || | | | | | || ||| || | ||||| || | | | | |||| || Sbjct 6971647 TGTTGCACAAACCTTC-GAAACAGAGA-GTAAAGGAAATAATCGT------CAATGCAGT 6971596 Query 125654 GAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTG 125713 ||||||||||| ||||| || || || |||| || || | | ||||| ||||| || Sbjct 6971595 TAGGATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTG 6971536 Query 125714 CAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG 125773 || | ||| ||||||| ||||| ||||||||| | || || ||| || || Sbjct 6971535 CACTTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCTG---GG 6971479 Query 125774 C---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGA 125830 | ||||| ||| ||| | | ||||| ||||| || ||| | || ||||| || Sbjct 6971478 CTTTAGCAAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGA 6971419 Query 125831 GGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAG 125867 ||| ||||| ||||| || ||||||| || |||||| Sbjct 6971418 GGGGAAGACTAACTTCTTTGAGAAGAGAGTAAGCGAG 6971382 Score = 143 bits (158), Expect = 4e-29 Identities = 303/447 (68%), Gaps = 19/447 (4%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| || || || || || || |||||||||||||| ||| ||||||| | || || | Sbjct 6968944 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCT 6968885 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 |||||||||| || ||||| ||||| || || ||| || || |||| ||| Sbjct 6968884 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAG 6968825 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG- 125606 | ||||| | |||||||||||| || || |||| ||| | ||| | | | Sbjct 6968824 ATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTT---CAAACACCTGTTGCACAAAC 6968768 Query 125607 -TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665 | | || ||| || | ||||| || | | | | |||| || ||||||||||| Sbjct 6968767 CTTC-GAAACAGAGA-GTAAAGGAAATAATCGT------CAATGCAGTTAGGATAGAACA 6968716 Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| || || || |||| || || | | ||||| ||||| |||| | ||| Sbjct 6968715 GGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGATGAA 6968656 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC---CGCAAGAT 125782 ||||||| ||||| ||||||||| | || || ||| || ||| ||||| | Sbjct 6968655 GCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCTG---GGCTTTAGCAAGGT 6968599 Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842 || ||| | | ||||| ||||| || ||| | || ||||| ||||| ||||| || Sbjct 6968598 TTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAA 6968539 Query 125843 CTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 ||| || ||||||| || ||||||| Sbjct 6968538 CTTCTTTGAGAAGAGAGTAGGCGAGTA 6968512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740919704868840