Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_004629.1
Length=280334
Score E
Sequences producing significant alignments: (Bits) Value
seq9910 109 1e-18
seq7041 102 1e-16
seq9956 96.9 6e-15
seq10415 95.1 2e-14
seq7832 93.3 8e-14
seq728 93.3 8e-14
seq7835 89.7 9e-13
seq8237 84.2 4e-11
>seq9910
Length=308115
Score = 109 bits (120), Expect = 1e-18
Identities = 71/77 (92%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 273271 TGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 273330
||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 244826 TGGTCGGCGTGGAGAGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 244885
Query 273331 -ACTGCGCTACACTCCG 273346
||| |||||||| |||
Sbjct 244886 GACTACGCTACACGCCG 244902
>seq7041
Length=191181
Score = 102 bits (112), Expect = 1e-16
Identities = 73/83 (88%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 273265 TTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCG 273324
|||||||||||||||||| |||| ||||||||||||| ||| ||||||| ||| |||
Sbjct 50063 TTAAAATGGTCGGAGTGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCG 50122
Query 273325 CTACCA-ACTGCGCTACACTCCG 273346
|||||| ||||||||||||||||
Sbjct 50123 CTACCAGACTGCGCTACACTCCG 50145
>seq9956
Length=123604
Score = 96.9 bits (106), Expect = 6e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 271738 ATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTA 271797
|| ||||||| ||||||| |||||||||||||| || ||||||||||| ||||||||
Sbjct 116475 ATTTGGCTCCTCGACCTGGGCTCGAACCAGGGACACACGGATTAACAGTCCGTTGCTCTA 116416
Query 271798 CCGACTGAGCTATCACGGAAT 271818
|||||||||||||| |||||
Sbjct 116415 CCGACTGAGCTATCGAGGAAT 116395
>seq10415
Length=20837
Score = 95.1 bits (104), Expect = 2e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 273271 TGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 273330
||||||| || | | || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 5307 TGGTCGGGGTAGAGGGATTCGAACCCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 5248
Query 273331 -ACTGCGCTACACTCCG 273346
||||||||| || |||
Sbjct 5247 GACTGCGCTATACCCCG 5231
>seq7832
Length=242706
Score = 93.3 bits (102), Expect = 8e-14
Identities = 81/100 (81%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 272851 CCCAAGTGGGAGGCTAGTATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGAT 272910
|| |||||| | || ||| |||||||||| | ||||||||| | |||||| |||
Sbjct 201191 CCTAAGTGGTTGTCT--TATTTGGTGGGCCCGCCCAGACTTGAACTGGGGACCAACGGAT 201248
Query 272911 TATGAGTCGCCTGCTCTAACCAACTGAGCTATAGGCCCTT 272950
|||||||| ||||||||||||||||||||| ||||||||
Sbjct 201249 TATGAGTCCGCTGCTCTAACCAACTGAGCTACAGGCCCTT 201288
>seq728
Length=7478
Score = 93.3 bits (102), Expect = 8e-14
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931
||||||||||| ||||| | ||||||| |||||| ||||||||||| ||||||||||||
Sbjct 6037 TGGTGGGCCCACCAGGATTCGAACCTGAAACCAAGGGATTATGAGTCCCCTGCTCTAACC 5978
Query 272932 AACTGAGCTATAGGCCCT 272949
|||||||||||||||
Sbjct 5977 -GTTGAGCTATAGGCCCT 5961
>seq7835
Length=204203
Score = 89.7 bits (98), Expect = 9e-13
Identities = 92/119 (77%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 271729 CTCTTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCA 271788
|| |||||||| |||||| |||||| ||||||||||||||| |||||||||||
Sbjct 26021 CTTTTTAGAATTTGGCTCTTCCACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCC 26080
Query 271789 CTTGCTCTACCGACTGAGCTATCACGGAATTAAATGGCGCGCCCAAGGGGACTCGAACC 271847
| ||||||||||||||||||| ||| || ||||| | || | || ||||||||
Sbjct 26081 GTCGCTCTACCGACTGAGCTATGGAAGAA-TAGATGGCTCTCCAACCTGGGCTCGAACC 26138
>seq8237
Length=506431
Score = 84.2 bits (92), Expect = 4e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791
|||||||| |||||| |||||| ||||||||||||||| ||||||||||| |
Sbjct 190148 TTTAGAATTTGGCTCTCCAACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTC 190089
Query 271792 GCTCTACCGACTGAGCTAT 271810
|||||||||||||||||||
Sbjct 190088 GCTCTACCGACTGAGCTAT 190070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 896771962106160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |