Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq9910 109 1e-18 seq7041 102 1e-16 seq9956 96.9 6e-15 seq10415 95.1 2e-14 seq7832 93.3 8e-14 seq728 93.3 8e-14 seq7835 89.7 9e-13 seq8237 84.2 4e-11 >seq9910 Length=308115 Score = 109 bits (120), Expect = 1e-18 Identities = 71/77 (92%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 273271 TGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 273330 ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 244826 TGGTCGGCGTGGAGAGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 244885 Query 273331 -ACTGCGCTACACTCCG 273346 ||| |||||||| ||| Sbjct 244886 GACTACGCTACACGCCG 244902 >seq7041 Length=191181 Score = 102 bits (112), Expect = 1e-16 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 273265 TTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCG 273324 |||||||||||||||||| |||| ||||||||||||| ||| ||||||| ||| ||| Sbjct 50063 TTAAAATGGTCGGAGTGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCG 50122 Query 273325 CTACCA-ACTGCGCTACACTCCG 273346 |||||| |||||||||||||||| Sbjct 50123 CTACCAGACTGCGCTACACTCCG 50145 >seq9956 Length=123604 Score = 96.9 bits (106), Expect = 6e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 271738 ATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTA 271797 || ||||||| ||||||| |||||||||||||| || ||||||||||| |||||||| Sbjct 116475 ATTTGGCTCCTCGACCTGGGCTCGAACCAGGGACACACGGATTAACAGTCCGTTGCTCTA 116416 Query 271798 CCGACTGAGCTATCACGGAAT 271818 |||||||||||||| ||||| Sbjct 116415 CCGACTGAGCTATCGAGGAAT 116395 >seq10415 Length=20837 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 273271 TGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 273330 ||||||| || | | || |||||| ||||||||||||||||||||||||||||||||||| Sbjct 5307 TGGTCGGGGTAGAGGGATTCGAACCCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 5248 Query 273331 -ACTGCGCTACACTCCG 273346 ||||||||| || ||| Sbjct 5247 GACTGCGCTATACCCCG 5231 >seq7832 Length=242706 Score = 93.3 bits (102), Expect = 8e-14 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 272851 CCCAAGTGGGAGGCTAGTATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGAT 272910 || |||||| | || ||| |||||||||| | ||||||||| | |||||| ||| Sbjct 201191 CCTAAGTGGTTGTCT--TATTTGGTGGGCCCGCCCAGACTTGAACTGGGGACCAACGGAT 201248 Query 272911 TATGAGTCGCCTGCTCTAACCAACTGAGCTATAGGCCCTT 272950 |||||||| ||||||||||||||||||||| |||||||| Sbjct 201249 TATGAGTCCGCTGCTCTAACCAACTGAGCTACAGGCCCTT 201288 >seq728 Length=7478 Score = 93.3 bits (102), Expect = 8e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 ||||||||||| ||||| | ||||||| |||||| ||||||||||| |||||||||||| Sbjct 6037 TGGTGGGCCCACCAGGATTCGAACCTGAAACCAAGGGATTATGAGTCCCCTGCTCTAACC 5978 Query 272932 AACTGAGCTATAGGCCCT 272949 ||||||||||||||| Sbjct 5977 -GTTGAGCTATAGGCCCT 5961 >seq7835 Length=204203 Score = 89.7 bits (98), Expect = 9e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 271729 CTCTTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCA 271788 || |||||||| |||||| |||||| ||||||||||||||| ||||||||||| Sbjct 26021 CTTTTTAGAATTTGGCTCTTCCACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCC 26080 Query 271789 CTTGCTCTACCGACTGAGCTATCACGGAATTAAATGGCGCGCCCAAGGGGACTCGAACC 271847 | ||||||||||||||||||| ||| || ||||| | || | || |||||||| Sbjct 26081 GTCGCTCTACCGACTGAGCTATGGAAGAA-TAGATGGCTCTCCAACCTGGGCTCGAACC 26138 >seq8237 Length=506431 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 |||||||| |||||| |||||| ||||||||||||||| ||||||||||| | Sbjct 190148 TTTAGAATTTGGCTCTCCAACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTC 190089 Query 271792 GCTCTACCGACTGAGCTAT 271810 ||||||||||||||||||| Sbjct 190088 GCTCTACCGACTGAGCTAT 190070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896771962106160