Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_004688.1
Length=110865
Score E
Sequences producing significant alignments: (Bits) Value
seq9376 89.7 4e-13
seq9968 87.8 1e-12
seq9425 86.0 4e-12
seq4123 84.2 2e-11
>seq9376
Length=532321
Score = 89.7 bits (98), Expect = 4e-13
Identities = 101/131 (77%), Gaps = 6/131 (5%)
Strand=Plus/Plus
Query 99772 CGGTAGAGCAGCGAAACCAGCATTGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTCG 99829
|||||||||||||| | | ||| | ||||||| || | ||||||||||| ||||| |
Sbjct 135539 CGGTAGAGCAGCGACAGGATCATGGTGTTGATGGCAACC--GACTTGCCCGAACCGGTGG 135596
Query 99830 CGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGA-GATGTCCTTGCCCTCG 99888
||| || |||||||||||||||||||| |||| |||| | || || | || ||| ||
Sbjct 135597 TGCCGGCGACCAGCAGATGCGGCATCTTCGCCA-GTTCGGCGATGACGGGCTCGCCGCCG 135655
Query 99889 ACGTCCTTGCC 99899
| | ||||||
Sbjct 135656 ATGGTCTTGCC 135666
>seq9968
Length=31652
Score = 87.8 bits (96), Expect = 1e-12
Identities = 130/184 (71%), Gaps = 3/184 (2%)
Strand=Plus/Minus
Query 99376 CGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTC 99435
|||| ||| | |||| |||||| ||||| || | ||| |||||| ||| ||||| ||
Sbjct 27742 CGCGTGGGAATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTG 27683
Query 99436 GCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCC 99495
||||||| || || ||||||||||| || |||||||| || | ||| | || ||
Sbjct 27682 GCCAGGATCAGGTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCC 27623
Query 99496 TCAACCTCTTTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACG 99555
|| | | |||||| | | ||||||| || || || || || || | || | |||
Sbjct 27622 TCGATC---TTCTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTCGATGACGATGACG 27566
Query 99556 ATGT 99559
||||
Sbjct 27565 ATGT 27562
>seq9425
Length=520298
Score = 86.0 bits (94), Expect = 4e-12
Identities = 191/283 (67%), Gaps = 8/283 (3%)
Strand=Plus/Plus
Query 99582 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGAG 99638
|| ||||||||| ||| ||||| ||||| ||||| |||||||| || ||
Sbjct 178682 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCCGCACCGT--- 178738
Query 99639 CCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGG 99698
||| ||||| ||| |||| | | || || || |||||| ||| || || ||
Sbjct 178739 CCATTTCAGCGCCACCACTGCCTTCTTCGGGTCGGTGACGACGGGCGTGAGGAGATGCGG 178798
Query 99699 GATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCC 99757
|| |||| || | | |||| ||| || || |||||||||||||| |
Sbjct 178799 AATGCCGTCATAGACCGACAATTCGAG-CATCTTCGGATCGATCATGATGAGGCGGCATT 178857
Query 99758 GATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGC 99817
|| || || ||||||||||||||| | | ||| | ||||||| | |||||||
Sbjct 178858 CTTCCGGCCTCAGCCGGTAGAGCAGCGACAGGATCATGGTGTTGATGGCGACCGACTTGC 178917
Query 99818 CCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGC 99860
| || ||||| | || |||||||||| ||||||||||| ||
Sbjct 178918 CGGAACCGGTGGTACCGGCCACCAGCACGTGCGGCATCTTGGC 178960
>seq4123
Length=139599
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/137 (74%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 99729 TTTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAAC 99788
||| |||||||||||||| || | | | || || | | |||||||||||||| |
Sbjct 138438 TTTCGGGTCGATCATGATCAGGCGGCACTGTTCCGGCGACATGCGGTAGAGCAGCGACAG 138497
Query 99789 CAGCATTGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGA 99846
| ||| | ||||||| || | ||||||||||| ||||| | ||| || || || |||
Sbjct 138498 GATCATGGTGTTGATGGCAACC--GACTTGCCCGAGCCGGTGGTGCCGGCGACGAGAAGA 138555
Query 99847 TGCGGCATCTTAGCCAG 99863
||||||||||| || ||
Sbjct 138556 TGCGGCATCTTGGCGAG 138572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354578111779374
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |