Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq9376 89.7 4e-13 seq9968 87.8 1e-12 seq9425 86.0 4e-12 seq4123 84.2 2e-11 >seq9376 Length=532321 Score = 89.7 bits (98), Expect = 4e-13 Identities = 101/131 (77%), Gaps = 6/131 (5%) Strand=Plus/Plus Query 99772 CGGTAGAGCAGCGAAACCAGCATTGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTCG 99829 |||||||||||||| | | ||| | ||||||| || | ||||||||||| ||||| | Sbjct 135539 CGGTAGAGCAGCGACAGGATCATGGTGTTGATGGCAACC--GACTTGCCCGAACCGGTGG 135596 Query 99830 CGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGA-GATGTCCTTGCCCTCG 99888 ||| || |||||||||||||||||||| |||| |||| | || || | || ||| || Sbjct 135597 TGCCGGCGACCAGCAGATGCGGCATCTTCGCCA-GTTCGGCGATGACGGGCTCGCCGCCG 135655 Query 99889 ACGTCCTTGCC 99899 | | |||||| Sbjct 135656 ATGGTCTTGCC 135666 >seq9968 Length=31652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 130/184 (71%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 99376 CGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTC 99435 |||| ||| | |||| |||||| ||||| || | ||| |||||| ||| ||||| || Sbjct 27742 CGCGTGGGAATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTG 27683 Query 99436 GCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCC 99495 ||||||| || || ||||||||||| || |||||||| || | ||| | || || Sbjct 27682 GCCAGGATCAGGTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCC 27623 Query 99496 TCAACCTCTTTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACG 99555 || | | |||||| | | ||||||| || || || || || || | || | ||| Sbjct 27622 TCGATC---TTCTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTCGATGACGATGACG 27566 Query 99556 ATGT 99559 |||| Sbjct 27565 ATGT 27562 >seq9425 Length=520298 Score = 86.0 bits (94), Expect = 4e-12 Identities = 191/283 (67%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 99582 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGAG 99638 || ||||||||| ||| ||||| ||||| ||||| |||||||| || || Sbjct 178682 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCCGCACCGT--- 178738 Query 99639 CCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGG 99698 ||| ||||| ||| |||| | | || || || |||||| ||| || || || Sbjct 178739 CCATTTCAGCGCCACCACTGCCTTCTTCGGGTCGGTGACGACGGGCGTGAGGAGATGCGG 178798 Query 99699 GATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCC 99757 || |||| || | | |||| ||| || || |||||||||||||| | Sbjct 178799 AATGCCGTCATAGACCGACAATTCGAG-CATCTTCGGATCGATCATGATGAGGCGGCATT 178857 Query 99758 GATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGC 99817 || || || ||||||||||||||| | | ||| | ||||||| | ||||||| Sbjct 178858 CTTCCGGCCTCAGCCGGTAGAGCAGCGACAGGATCATGGTGTTGATGGCGACCGACTTGC 178917 Query 99818 CCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGC 99860 | || ||||| | || |||||||||| ||||||||||| || Sbjct 178918 CGGAACCGGTGGTACCGGCCACCAGCACGTGCGGCATCTTGGC 178960 >seq4123 Length=139599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/137 (74%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 99729 TTTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAAC 99788 ||| |||||||||||||| || | | | || || | | |||||||||||||| | Sbjct 138438 TTTCGGGTCGATCATGATCAGGCGGCACTGTTCCGGCGACATGCGGTAGAGCAGCGACAG 138497 Query 99789 CAGCATTGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGA 99846 | ||| | ||||||| || | ||||||||||| ||||| | ||| || || || ||| Sbjct 138498 GATCATGGTGTTGATGGCAACC--GACTTGCCCGAGCCGGTGGTGCCGGCGACGAGAAGA 138555 Query 99847 TGCGGCATCTTAGCCAG 99863 ||||||||||| || || Sbjct 138556 TGCGGCATCTTGGCGAG 138572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354578111779374