Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq8560 87.8 1e-12 seq504 84.2 2e-11 seq3764 82.4 6e-11 seq899 82.4 6e-11 >seq8560 Length=3069389 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | ||| || ||||||||||| ||||| || ||||| |||||||| || Sbjct 2390302 GCCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2390243 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | | | | ||||| | ||| || ||||| | |||| | ||| | ||| || Sbjct 2390242 CAAAGTACGTCCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCT-GTCAGGAGG 2390184 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || || || ||| | ||||| |||||| ||||| || || Sbjct 2390183 AATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGAC 2390124 Query 15316 ATCTAAGGTAATGGTTTTACCTGTC-AGAGTTTTTACAAAAATTTGCATATT 15366 | | || ||||| || |||||| ||||| || |||||||| ||||| || Sbjct 2390123 CTTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 2390072 >seq504 Length=1076656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || |||| | |||| ||| | || ||||| |||||||| || | | | | | Sbjct 268493 TCTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCC 268434 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| |||||||| | |||| | ||| ||||| ||||||||||| || Sbjct 268433 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 268374 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || || ||| |||||| ||||| | ||||| || || || | || || Sbjct 268373 ATCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTGAT 268314 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || |||||||| || || || ||||| ||||| || Sbjct 268313 GGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCTT 268275 >seq3764 Length=1885950 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || |||| |||||| ||||| || ||||| |||||||| || Sbjct 1780318 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1780259 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||| | | |||| | ||| ||||| ||| Sbjct 1780258 AAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 1780199 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| || |||| ||||| || || Sbjct 1780198 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACC 1780139 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGC 15361 || | || ||||| || || |||| || || || ||||| ||| Sbjct 1780138 TCAAGAGTGATGGTCTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094 >seq899 Length=2520420 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| ||||| || |||||||| || || | | | | ||||| | ||| Sbjct 2265338 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGT 2265397 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | ||||| | |||||||| || || |||||||| || || || Sbjct 2265398 TTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTC 2265457 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || || || || || | |||||||||||||| || Sbjct 2265458 ACCTTGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGGTTTTACCAGTG 2265517 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || ||||| Sbjct 2265518 AGGGTCTTTACAAAGATCTGCAT 2265540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362112728685519