Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq8560 87.8 1e-12
seq504 84.2 2e-11
seq3764 82.4 6e-11
seq899 82.4 6e-11
>seq8560
Length=3069389
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195
|||||| | | ||| || ||||||||||| ||||| || ||||| |||||||| ||
Sbjct 2390302 GCCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2390243
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
| | | | | ||||| | ||| || ||||| | |||| | ||| | ||| ||
Sbjct 2390242 CAAAGTACGTCCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCT-GTCAGGAGG 2390184
Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
||||||||| || || || ||| | ||||| |||||| ||||| || ||
Sbjct 2390183 AATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGAC 2390124
Query 15316 ATCTAAGGTAATGGTTTTACCTGTC-AGAGTTTTTACAAAAATTTGCATATT 15366
| | || ||||| || |||||| ||||| || |||||||| ||||| ||
Sbjct 2390123 CTTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 2390072
>seq504
Length=1076656
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207
||| || |||| | |||| ||| | || ||||| |||||||| || | | | | |
Sbjct 268493 TCTCAACACTAGACGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCC 268434
Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267
||||| | ||| |||||||| | |||| | ||| ||||| ||||||||||| ||
Sbjct 268433 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 268374
Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| || ||| |||||| ||||| | ||||| || || || | || ||
Sbjct 268373 ATCCTGGATCTTGGGCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTGAT 268314
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
||| || |||||||| || || || ||||| ||||| ||
Sbjct 268313 GGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCTT 268275
>seq3764
Length=1885950
Score = 82.4 bits (90), Expect = 6e-11
Identities = 153/225 (68%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || |||| |||||| ||||| || ||||| |||||||| ||
Sbjct 1780318 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1780259
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | ||| |||||| | | |||| | ||| ||||| |||
Sbjct 1780258 AAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 1780199
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || || ||| ||||||| || |||| ||||| || ||
Sbjct 1780198 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGCTCGACC 1780139
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGC 15361
|| | || ||||| || || |||| || || || ||||| |||
Sbjct 1780138 TCAAGAGTGATGGTCTTCCCCCTCAGGGTCTTCACGAAAATCTGC 1780094
>seq899
Length=2520420
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| || ||||| ||||| || |||||||| || || | | | | ||||| | |||
Sbjct 2265338 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGT 2265397
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| || || | ||||| | |||||||| || || |||||||| || || ||
Sbjct 2265398 TTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTC 2265457
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| ||| | || ||||| || || || || || | |||||||||||||| ||
Sbjct 2265458 ACCTTGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGGTTTTACCAGTG 2265517
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
|| || |||||||| || |||||
Sbjct 2265518 AGGGTCTTTACAAAGATCTGCAT 2265540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362112728685519
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |