Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq7272 150 4e-32 >seq7272 Length=98981 Score = 150 bits (166), Expect = 4e-32 Identities = 644/999 (64%), Gaps = 29/999 (3%) Strand=Plus/Minus Query 1538 CACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATGTATTCGACGTT 1597 ||||| ||| | ||||| || || || |||| |||||| | ||||| | | ||||| Sbjct 42066 CACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTT 42007 Query 1598 ATATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAAAGTCCATGCCTTTCCA 1657 ||||| || || | | ||||||| ||| ||||| | |||||||| || || | Sbjct 42006 GTATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAA 41947 Query 1658 CTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGTACCAC 1717 ||| ||||| || || | ||| ||||| || | | | ||||| ||||| || || Sbjct 41946 CTGCATGCGCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTAC 41887 Query 1718 GCATCCGGCACTGTCGCCACGGTGTGAC--GGGTCGTAACCAATCCATACCGGGCGGGAG 1775 || || |||||| || || | ||||| || |||||||| || || | Sbjct 41886 AAGGCCCGCCGAGTCGCCC--GTATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGG 41829 Query 1776 CCGAACGGATTGGCGGCAAAGGGTGCATAGTCTTCCCATTCTTCC-AGCGTGTCGACCAT 1834 || ||||| | ||||| | || ||| | ||| ||| |||| | Sbjct 41828 CCAAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGC-TGTCCGCATG 41770 Query 1835 GCAGCGTTGCAGCTCCTCGAACGGGAACAC--CGATGCCTTGTCGTCAACAAATTCACAC 1892 |||||| |||| | |||||| || ||| | |||| || ||||| | ||| Sbjct 41769 GCAGCGCATCAGCGTGGACAGCGGGAAAACAGCGAAGG--TGTCATCGACAAACCCGCAC 41712 Query 1893 ATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTCAATGTCGAAC 1952 |||| |||||| | | || ||| | | ||| || | |||| ||||||| Sbjct 41711 ATGAGCAGGTTGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAAC 41652 Query 1953 AGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCA---CTGGCCG 2009 || |||||||||| | | || ||| | ||||||||||||||||| || | | Sbjct 41651 AGATTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCC 41592 Query 2010 TCCGCACAGAGAAGACCTCCGGCAAGG-GCGTTATGACTGACGTCGATTTCCACGCGTTC 2068 || || | | |||| ||||| || ||| ||| ||| || | ||| | || | ||| || Sbjct 41591 TC-GC-CGGTGAAG-CCTCCAGCCAGGTGCGA-ATGGCTCAGGTCCAGCTCTATGCGGTC 41536 Query 2069 GGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGTAGGCGTCGTG 2128 ||||||| | ||||| |||| | ||| | || ||||| | ||| Sbjct 41535 CTTTT---TGGCGCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTG 41479 Query 2129 CGCCAGCGTGGACGGGGTGGAGAAATAG-GTCGAGCGCAGGTGGCTCTGTGAGGCCATAC 2187 | ||| || || ||||| ||| || ||| |||| || | || |||||||| Sbjct 41478 CTGCAGGCTGCTGGGCGTGGA-AAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATAC 41420 Query 2188 CTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCGTCGACGTACA 2247 | |||||||| | ||| || || || || ||| || | || |||| || | Sbjct 41419 CGCTGGCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGA 41360 Query 2248 GGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCGC 2307 | | ||||| | ||| |||||| || | | ||||| || ||| ||| | |||| Sbjct 41359 GATTGCCGTGGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGC 41300 Query 2308 CGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC---AACCAGACGGGCAA 2364 | ||||| |||||| || ||||| || ||| || | || | | ||||| Sbjct 41299 C---ATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCAA 41243 Query 2365 AGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCT 2424 | ||||||||||| | ||||| |||| ||||||| |||||||| |||||||||| Sbjct 41242 ACGCGATGATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCT 41183 Query 2425 GGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGC 2484 | || | || || ||||||||| | ||| ||||||||| || || |||| || | Sbjct 41182 GATTGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCC 41123 Query 2485 CAATCTGGCGGGATTTCAGGATATCTCGGATGCGGTGCT 2523 | |||||||| ||||| || || | || |||| |||| Sbjct 41122 CGATCTGGCGCGATTTGAGAATGGCGCGCGTGCGCTGCT 41084 Score = 109 bits (120), Expect = 1e-19 Identities = 340/519 (66%), Gaps = 8/519 (2%) Strand=Plus/Minus Query 17096 GCGCTGGGTCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAC 17155 ||| |||| |||||||| |||||| |||||| || ||||| || || ||||| ||| Sbjct 25315 GCGATGGGGCTGCGCGCCCGCATCGACGTGGAGCAAGGTTGGCACAAGACCCTGTCAAAC 25256 Query 17156 GTCGGGGTGAACGGTGTTACCGGCATCAGTGCATCCGTCTTCTGGGATTTGCAGAAGCCA 17215 || | | || || |||||||| ||| | || |||| |||| Sbjct 25255 GTGCCGCTAAATGGCCCGGTGGGCATCAGCAAGGACGTGCATTTCGACCTGCA-AAGCTC 25197 Query 17216 GGC-ACTGATGCTGACCTGCTGAACGAGGCAGGCGTCACAACGCTGGTTCGCCGCGACGG 17274 || || || || ||||||| || |||| |||||| ||||| | | | | || Sbjct 25196 GGAGACGGACGCAAACCTGCTCAATGAGGGCAACGTCACCACGCTCATCAACTACCAGGG 25137 Query 17275 TTTTCGTTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAGCTA 17334 | ||| |||||||| || |||||| ||| ||||||| || || | Sbjct 25136 CTATCGCTTCTGGGGATCGCGCACCTGCAGCACCGACGAACTGTTCCGATTCGAGTCCAG 25077 Query 17335 CACACGCACCGCGCAGGTACTGGCCGACACGATGGCTGAGGCGCACATGTGGGCTATT-- 17392 | ||||| || ||||| ||||||||||| ||||| |||| || | | | || | Sbjct 25076 CGTGCGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTGTC 25019 Query 17393 GATAAGCCCAT-CACCGCAACGCTGATTCGCGACATCATTGACGGCATCAATGCCAAATT 17451 || |||||||| |||| || | || | |||||| | || |||||||||||||| || Sbjct 25018 GACAAGCCCATGCACCCCAGCA-TGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGTT 24960 Query 17452 CCGTGAACTGAAAAACAACGGTTATATCGTGGATGGCACATGCTGGTTCAGCGAAGAATC 17511 ||| ||||| || | || || ||| | || ||| |||||| || || Sbjct 24959 CCGCGAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGGT 24900 Query 17512 CAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATACCCCGGT 17571 |||| | ||| | ||||||||||| || ||| | ||||||||||| || || || Sbjct 24899 CAACACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCGT 24840 Query 17572 GCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATTAC 17610 ||| || || ||| ||||| | |||||||| || || Sbjct 24839 GCCGCCGCTGGAAGACCTGGGATTCCGCCAGCGCATCAC 24801 Score = 84.2 bits (92), Expect = 4e-12 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 600 GATATATCCGGCATGAGCGCCGTTTTCGTAATACTTGCGGCGGAACAGCGTGGCCGACTC 659 ||| ||||||||||| || || | ||||||| ||| || ||||||||||||||||| Sbjct 42989 GATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCCGAAACAGCGTGGCCGACTC 42930 Query 660 ATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCAGGCCGTACAGCTCCTGATT 719 ||| |||||||| || | || ||| || || | |||||| || || | ||||| | Sbjct 42929 ATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCAGTCCATAGATTTCCTGGTG 42870 Query 720 AATATCCGGCT 730 | ||| |||| Sbjct 42869 CACATCGGGCT 42859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98190437893020