Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_004745.1
Length=30728
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 150 4e-32
>seq7272
Length=98981
Score = 150 bits (166), Expect = 4e-32
Identities = 644/999 (64%), Gaps = 29/999 (3%)
Strand=Plus/Minus
Query 1538 CACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATGTATTCGACGTT 1597
||||| ||| | ||||| || || || |||| |||||| | ||||| | | |||||
Sbjct 42066 CACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTT 42007
Query 1598 ATATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAAAGTCCATGCCTTTCCA 1657
||||| || || | | ||||||| ||| ||||| | |||||||| || || |
Sbjct 42006 GTATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAA 41947
Query 1658 CTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGTACCAC 1717
||| ||||| || || | ||| ||||| || | | | ||||| ||||| || ||
Sbjct 41946 CTGCATGCGCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTAC 41887
Query 1718 GCATCCGGCACTGTCGCCACGGTGTGAC--GGGTCGTAACCAATCCATACCGGGCGGGAG 1775
|| || |||||| || || | ||||| || |||||||| || || |
Sbjct 41886 AAGGCCCGCCGAGTCGCCC--GTATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGG 41829
Query 1776 CCGAACGGATTGGCGGCAAAGGGTGCATAGTCTTCCCATTCTTCC-AGCGTGTCGACCAT 1834
|| ||||| | ||||| | || ||| | ||| ||| |||| |
Sbjct 41828 CCAAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGC-TGTCCGCATG 41770
Query 1835 GCAGCGTTGCAGCTCCTCGAACGGGAACAC--CGATGCCTTGTCGTCAACAAATTCACAC 1892
|||||| |||| | |||||| || ||| | |||| || ||||| | |||
Sbjct 41769 GCAGCGCATCAGCGTGGACAGCGGGAAAACAGCGAAGG--TGTCATCGACAAACCCGCAC 41712
Query 1893 ATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTCAATGTCGAAC 1952
|||| |||||| | | || ||| | | ||| || | |||| |||||||
Sbjct 41711 ATGAGCAGGTTGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAAC 41652
Query 1953 AGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCA---CTGGCCG 2009
|| |||||||||| | | || ||| | ||||||||||||||||| || | |
Sbjct 41651 AGATTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCC 41592
Query 2010 TCCGCACAGAGAAGACCTCCGGCAAGG-GCGTTATGACTGACGTCGATTTCCACGCGTTC 2068
|| || | | |||| ||||| || ||| ||| ||| || | ||| | || | ||| ||
Sbjct 41591 TC-GC-CGGTGAAG-CCTCCAGCCAGGTGCGA-ATGGCTCAGGTCCAGCTCTATGCGGTC 41536
Query 2069 GGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGTAGGCGTCGTG 2128
||||||| | ||||| |||| | ||| | || ||||| | |||
Sbjct 41535 CTTTT---TGGCGCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTG 41479
Query 2129 CGCCAGCGTGGACGGGGTGGAGAAATAG-GTCGAGCGCAGGTGGCTCTGTGAGGCCATAC 2187
| ||| || || ||||| ||| || ||| |||| || | || ||||||||
Sbjct 41478 CTGCAGGCTGCTGGGCGTGGA-AAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATAC 41420
Query 2188 CTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCGTCGACGTACA 2247
| |||||||| | ||| || || || || ||| || | || |||| || |
Sbjct 41419 CGCTGGCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGA 41360
Query 2248 GGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCGC 2307
| | ||||| | ||| |||||| || | | ||||| || ||| ||| | ||||
Sbjct 41359 GATTGCCGTGGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGC 41300
Query 2308 CGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC---AACCAGACGGGCAA 2364
| ||||| |||||| || ||||| || ||| || | || | | |||||
Sbjct 41299 C---ATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCAA 41243
Query 2365 AGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCT 2424
| ||||||||||| | ||||| |||| ||||||| |||||||| ||||||||||
Sbjct 41242 ACGCGATGATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCT 41183
Query 2425 GGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGC 2484
| || | || || ||||||||| | ||| ||||||||| || || |||| || |
Sbjct 41182 GATTGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCC 41123
Query 2485 CAATCTGGCGGGATTTCAGGATATCTCGGATGCGGTGCT 2523
| |||||||| ||||| || || | || |||| ||||
Sbjct 41122 CGATCTGGCGCGATTTGAGAATGGCGCGCGTGCGCTGCT 41084
Score = 109 bits (120), Expect = 1e-19
Identities = 340/519 (66%), Gaps = 8/519 (2%)
Strand=Plus/Minus
Query 17096 GCGCTGGGTCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAC 17155
||| |||| |||||||| |||||| |||||| || ||||| || || ||||| |||
Sbjct 25315 GCGATGGGGCTGCGCGCCCGCATCGACGTGGAGCAAGGTTGGCACAAGACCCTGTCAAAC 25256
Query 17156 GTCGGGGTGAACGGTGTTACCGGCATCAGTGCATCCGTCTTCTGGGATTTGCAGAAGCCA 17215
|| | | || || |||||||| ||| | || |||| ||||
Sbjct 25255 GTGCCGCTAAATGGCCCGGTGGGCATCAGCAAGGACGTGCATTTCGACCTGCA-AAGCTC 25197
Query 17216 GGC-ACTGATGCTGACCTGCTGAACGAGGCAGGCGTCACAACGCTGGTTCGCCGCGACGG 17274
|| || || || ||||||| || |||| |||||| ||||| | | | | ||
Sbjct 25196 GGAGACGGACGCAAACCTGCTCAATGAGGGCAACGTCACCACGCTCATCAACTACCAGGG 25137
Query 17275 TTTTCGTTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAGCTA 17334
| ||| |||||||| || |||||| ||| ||||||| || || |
Sbjct 25136 CTATCGCTTCTGGGGATCGCGCACCTGCAGCACCGACGAACTGTTCCGATTCGAGTCCAG 25077
Query 17335 CACACGCACCGCGCAGGTACTGGCCGACACGATGGCTGAGGCGCACATGTGGGCTATT-- 17392
| ||||| || ||||| ||||||||||| ||||| |||| || | | | || |
Sbjct 25076 CGTGCGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTGTC 25019
Query 17393 GATAAGCCCAT-CACCGCAACGCTGATTCGCGACATCATTGACGGCATCAATGCCAAATT 17451
|| |||||||| |||| || | || | |||||| | || |||||||||||||| ||
Sbjct 25018 GACAAGCCCATGCACCCCAGCA-TGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGTT 24960
Query 17452 CCGTGAACTGAAAAACAACGGTTATATCGTGGATGGCACATGCTGGTTCAGCGAAGAATC 17511
||| ||||| || | || || ||| | || ||| |||||| || ||
Sbjct 24959 CCGCGAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGGT 24900
Query 17512 CAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATACCCCGGT 17571
|||| | ||| | ||||||||||| || ||| | ||||||||||| || || ||
Sbjct 24899 CAACACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCGT 24840
Query 17572 GCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATTAC 17610
||| || || ||| ||||| | |||||||| || ||
Sbjct 24839 GCCGCCGCTGGAAGACCTGGGATTCCGCCAGCGCATCAC 24801
Score = 84.2 bits (92), Expect = 4e-12
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 600 GATATATCCGGCATGAGCGCCGTTTTCGTAATACTTGCGGCGGAACAGCGTGGCCGACTC 659
||| ||||||||||| || || | ||||||| ||| || |||||||||||||||||
Sbjct 42989 GATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCCGAAACAGCGTGGCCGACTC 42930
Query 660 ATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCAGGCCGTACAGCTCCTGATT 719
||| |||||||| || | || ||| || || | |||||| || || | ||||| |
Sbjct 42929 ATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCAGTCCATAGATTTCCTGGTG 42870
Query 720 AATATCCGGCT 730
| ||| ||||
Sbjct 42869 CACATCGGGCT 42859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 98190437893020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |