Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_004775.1
Length=39671
Score E
Sequences producing significant alignments: (Bits) Value
seq9777 302 1e-77
seq1205 143 7e-30
>seq9777
Length=39614
Score = 302 bits (334), Expect = 1e-77
Identities = 439/610 (72%), Gaps = 14/610 (2%)
Strand=Plus/Plus
Query 855 GCTGGCCCGCGCATCCGGCCACGGCATCGGTAAATCTGCTTTCATCTCGATGCTGATTAA 914
|| |||| || || |||||||||||||| || || || | | |||||||||| ||
Sbjct 25510 GCAGGCCGTCGGCTCGGGCCACGGCATCGGCAAGTCCGCGCTGGTGGCGATGCTGATCAA 25569
Query 915 CTGGGGCATGTCCACCTGCGAGGACT-GCAAGGTGGTGGTGACCGCCAACACCGACAACC 973
|||| | | ||| | ||| ||| || || | | || || ||||||||||||| ||
Sbjct 25570 GTGGGCCTTCGACACGTTCGAAGACACGCGCGGCG-TCGTCACAGCCAACACCGACATCC 25628
Query 974 AGTTGCGCACCAAGACCTGGCCTGAAATCATCAAATGG--TCAAATCTGGCTATCACGAA 1031
|| ||||||| ||||||||| | ||| | || ||| | ||||| | || ||| ||
Sbjct 25629 AGCTGCGCACGAAGACCTGGGCGGAACTGTCGAAGTGGCATGAAATCAGCCT--CACCAA 25686
Query 1032 AGAGTGGTTCAC-CTGCACCGCTACCGCGATGTACAGCAATGATCCCGGCCATGACAAAC 1090
|| ||| ||| ||| ||||| || ||| || |||||| | || ||||| |||||
Sbjct 25687 GGACTGGGCCACGCTG-ACCGCCACGGCGCTGATCAGCAACGCCCCGGGCCACGACAAGA 25745
Query 1091 GCTGGCGTGCCGATGCTATCCCATGGTCTGAGCACAACACAGAAGCATTCGCAGGGCTGC 1150
|||||| ||| || | || ||||| || ||||||| || || |||||||| ||||
Sbjct 25746 CCTGGCGCATCGACGCGGTGCCGTGGTCGCAGAACAACACCGAGGCGTTCGCAGGCCTGC 25805
Query 1151 ACAACGAGCGCAAGCGCATCATCGTGGTATTCGACGAAGCATCCAACATTGCCGATCTGG 1210
|||||||| || ||||||| | |||| |||||||| || || ||| ||||| ||
Sbjct 25806 ACAACGAGGGCCGGCGCATCCTGCTGGTGTTCGACGAGGCTTCGGCCATCGCCGACAAGG 25865
Query 1211 TGTGGGAAGTAGCAGAAGGCGCGCTGACGGACGAAGACACCGAAATCATCTGGGTGGCGT 1270
|||||||||| || || || |||||||| ||| | | |||||| |||||||||| ||||
Sbjct 25866 TGTGGGAAGTGGCCGAGGGTGCGCTGACCGACCAGGGCACCGAGATCATCTGGGCCGCGT 25925
Query 1271 TCGGTAACCCGACGCGTAACACCGGGCGTTTCCGTGAATGTTTCCGCAAGTACAAACACC 1330
|||| ||| | || || |||||||| || ||||| || || |||||| || ||| |
Sbjct 25926 TCGGCAACACCACCCGCAACACCGGCCGGTTCCGCGAGTGCTTCCGCCGGTTCAAGGCCA 25985
Query 1331 GCTGGAAGTGCGCGCAGATTGACAGCCGCACCGTTGAAGGCACTAACAAGCAGCAGTTGC 1390
| ||| | || |||||| ||||||||||||||||| || ||| | | | ||
Sbjct 25986 GTTGGGACACCGAGCAGATCGACAGCCGCACCGTTGAGGGTGTGAACCTG--GTCGAGGC 26043
Query 1391 AGAAGTG---GGTAGACGACTACGGCGAGGAAAGCGACTTTGTTAAAGTTCGTGTGCGCG 1447
| || | ||| ||||||||||||||| |||||| | || || || ||| | ||||
Sbjct 26044 CG-AGCGCATGGTGCGCGACTACGGCGAGGACAGCGACGTGGTGAAGGTCCGTATCCGCG 26102
Query 1448 GAATATTCCC 1457
| | |||||
Sbjct 26103 GCCTGTTCCC 26112
>seq1205
Length=48877
Score = 143 bits (158), Expect = 7e-30
Identities = 395/599 (66%), Gaps = 10/599 (2%)
Strand=Plus/Plus
Query 864 CGCATCCGGCCACGGCATCGGTAAATCTGCTTTCATCTCGATGCTGATTAACTGGGGCAT 923
||| ||||||||||| ||||| || || || |||||| ||| | | || |||| |
Sbjct 35847 CGCGTCCGGCCACGGTATCGGCAAGTCGGCCGGCATCTCCATGATCAACAAGTGGGCGCT 35906
Query 924 GTCCACCTGCGAGGACTGCAAGGTGGTGGTGACCGCCAACACCGACAACCAGTTGCGCAC 983
|||||||| ||| | | || | |||||||| ||||| |||| ||| |||
Sbjct 35907 CGACACCTGCGTCGACACCCGCATCGTCATCACCGCCAATACCGAGGGCCAGCTGCTCAC 35966
Query 984 CAAGACCTGGCCTGAAATCATCAAATGGTCAAATCTGGCTATCACGAAAGAGTGGTTCAC 1043
|||||| |||| || | || ||| | | || || |||| || |||||||
Sbjct 35967 CAAGACTGGGCCGGAGCTGGCGAAGTGGGCGCAGCTCGCGGTCACCGGCGACTGGTTCAA 36026
Query 1044 CTGCACCGCTACCGCGAT-GTACAG-CAATGATC--CCGGCCATGACAAACGCTGGCGTG 1099
|| || ||| || || | | ||| | |||| | || ||||||
Sbjct 36027 GGTCAATGCCACCAGCATCGTGTCGACCATGGGCGACCGGTCG----AAGTCCTGGCGCA 36082
Query 1100 CCGATGCTATCCCATGGTCTGAGCACAACACAGAAGCATTCGCAGGGCTGCACAACGAGC 1159
|||| | || | ||||| | | ||||||| || || ||||| || ||||| || ||
Sbjct 36083 CCGACCTTGTCACCTGGTCGGCGAACAACACCGAGGCGTTCGCCGGCCTGCATAATCAGG 36142
Query 1160 GCAAGCGCATCATCGTGGTATTCGACGAAGCATCCAACATTGCCGATCTGGTGTGGGAAG 1219
||||||||||| | || | |||||||| || || ||| | | ||||||||| |
Sbjct 36143 GCAAGCGCATCGTGCTGATCTTCGACGAGGCGTCAGGCATCATCAACAAGGTGTGGGAGG 36202
Query 1220 TAGCAGAAGGCGCGCTGACGGACGAAGACACCGAAATCATCTGGGTGGCGTTCGGTAACC 1279
| || |||||||| || ||||| || ||||| ||| | ||| | || ||||| || |
Sbjct 36203 TCGCGCTCGGCGCGCTCACCGACGAGGATACCGAGATCCTGTGGCTCGCCTTCGGCAATC 36262
Query 1280 CGACGCGTAACACCGGGCGTTTCCGTGAATGTTTCCGCAAGTACAAACACCGCTGGAAG- 1338
| || | |||||||| ||||| || || | ||||| | || ||||||
Sbjct 36263 CCACACTCAACACCGGCTCGTTCCGCGACTGCTATGGCAAGAGCCGGAACATGTGGAAGA 36322
Query 1339 TGCGCGCAGATTGACAGCCGCACCGTTGAAGGCACTAACAAGCAGCAGTTGCAGAAGTGG 1398
||| |||||| || || |||| || || ||||| |||||| | | | | || |
Sbjct 36323 CGCG-GCAGATCGATAGTCGCAATGTCGAGGGCACCAACAAGAAATATCTCGACGAGCTG 36381
Query 1399 GTAGACGACTACGGCGAGGAAAGCGACTTTGTTAAAGTTCGTGTGCGCGGAATATTCCC 1457
|| | |||||||| ||| ||||| | || || ||||| |||||||| || |||||
Sbjct 36382 GTCACCACCTACGGCGCGGACAGCGATATCGTGAAGGTTCGCGTGCGCGGCATGTTCCC 36440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 126802920332814
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |