Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_004775.1 Length=39671 Score E Sequences producing significant alignments: (Bits) Value seq9777 302 1e-77 seq1205 143 7e-30 >seq9777 Length=39614 Score = 302 bits (334), Expect = 1e-77 Identities = 439/610 (72%), Gaps = 14/610 (2%) Strand=Plus/Plus Query 855 GCTGGCCCGCGCATCCGGCCACGGCATCGGTAAATCTGCTTTCATCTCGATGCTGATTAA 914 || |||| || || |||||||||||||| || || || | | |||||||||| || Sbjct 25510 GCAGGCCGTCGGCTCGGGCCACGGCATCGGCAAGTCCGCGCTGGTGGCGATGCTGATCAA 25569 Query 915 CTGGGGCATGTCCACCTGCGAGGACT-GCAAGGTGGTGGTGACCGCCAACACCGACAACC 973 |||| | | ||| | ||| ||| || || | | || || ||||||||||||| || Sbjct 25570 GTGGGCCTTCGACACGTTCGAAGACACGCGCGGCG-TCGTCACAGCCAACACCGACATCC 25628 Query 974 AGTTGCGCACCAAGACCTGGCCTGAAATCATCAAATGG--TCAAATCTGGCTATCACGAA 1031 || ||||||| ||||||||| | ||| | || ||| | ||||| | || ||| || Sbjct 25629 AGCTGCGCACGAAGACCTGGGCGGAACTGTCGAAGTGGCATGAAATCAGCCT--CACCAA 25686 Query 1032 AGAGTGGTTCAC-CTGCACCGCTACCGCGATGTACAGCAATGATCCCGGCCATGACAAAC 1090 || ||| ||| ||| ||||| || ||| || |||||| | || ||||| ||||| Sbjct 25687 GGACTGGGCCACGCTG-ACCGCCACGGCGCTGATCAGCAACGCCCCGGGCCACGACAAGA 25745 Query 1091 GCTGGCGTGCCGATGCTATCCCATGGTCTGAGCACAACACAGAAGCATTCGCAGGGCTGC 1150 |||||| ||| || | || ||||| || ||||||| || || |||||||| |||| Sbjct 25746 CCTGGCGCATCGACGCGGTGCCGTGGTCGCAGAACAACACCGAGGCGTTCGCAGGCCTGC 25805 Query 1151 ACAACGAGCGCAAGCGCATCATCGTGGTATTCGACGAAGCATCCAACATTGCCGATCTGG 1210 |||||||| || ||||||| | |||| |||||||| || || ||| ||||| || Sbjct 25806 ACAACGAGGGCCGGCGCATCCTGCTGGTGTTCGACGAGGCTTCGGCCATCGCCGACAAGG 25865 Query 1211 TGTGGGAAGTAGCAGAAGGCGCGCTGACGGACGAAGACACCGAAATCATCTGGGTGGCGT 1270 |||||||||| || || || |||||||| ||| | | |||||| |||||||||| |||| Sbjct 25866 TGTGGGAAGTGGCCGAGGGTGCGCTGACCGACCAGGGCACCGAGATCATCTGGGCCGCGT 25925 Query 1271 TCGGTAACCCGACGCGTAACACCGGGCGTTTCCGTGAATGTTTCCGCAAGTACAAACACC 1330 |||| ||| | || || |||||||| || ||||| || || |||||| || ||| | Sbjct 25926 TCGGCAACACCACCCGCAACACCGGCCGGTTCCGCGAGTGCTTCCGCCGGTTCAAGGCCA 25985 Query 1331 GCTGGAAGTGCGCGCAGATTGACAGCCGCACCGTTGAAGGCACTAACAAGCAGCAGTTGC 1390 | ||| | || |||||| ||||||||||||||||| || ||| | | | || Sbjct 25986 GTTGGGACACCGAGCAGATCGACAGCCGCACCGTTGAGGGTGTGAACCTG--GTCGAGGC 26043 Query 1391 AGAAGTG---GGTAGACGACTACGGCGAGGAAAGCGACTTTGTTAAAGTTCGTGTGCGCG 1447 | || | ||| ||||||||||||||| |||||| | || || || ||| | |||| Sbjct 26044 CG-AGCGCATGGTGCGCGACTACGGCGAGGACAGCGACGTGGTGAAGGTCCGTATCCGCG 26102 Query 1448 GAATATTCCC 1457 | | ||||| Sbjct 26103 GCCTGTTCCC 26112 >seq1205 Length=48877 Score = 143 bits (158), Expect = 7e-30 Identities = 395/599 (66%), Gaps = 10/599 (2%) Strand=Plus/Plus Query 864 CGCATCCGGCCACGGCATCGGTAAATCTGCTTTCATCTCGATGCTGATTAACTGGGGCAT 923 ||| ||||||||||| ||||| || || || |||||| ||| | | || |||| | Sbjct 35847 CGCGTCCGGCCACGGTATCGGCAAGTCGGCCGGCATCTCCATGATCAACAAGTGGGCGCT 35906 Query 924 GTCCACCTGCGAGGACTGCAAGGTGGTGGTGACCGCCAACACCGACAACCAGTTGCGCAC 983 |||||||| ||| | | || | |||||||| ||||| |||| ||| ||| Sbjct 35907 CGACACCTGCGTCGACACCCGCATCGTCATCACCGCCAATACCGAGGGCCAGCTGCTCAC 35966 Query 984 CAAGACCTGGCCTGAAATCATCAAATGGTCAAATCTGGCTATCACGAAAGAGTGGTTCAC 1043 |||||| |||| || | || ||| | | || || |||| || ||||||| Sbjct 35967 CAAGACTGGGCCGGAGCTGGCGAAGTGGGCGCAGCTCGCGGTCACCGGCGACTGGTTCAA 36026 Query 1044 CTGCACCGCTACCGCGAT-GTACAG-CAATGATC--CCGGCCATGACAAACGCTGGCGTG 1099 || || ||| || || | | ||| | |||| | || |||||| Sbjct 36027 GGTCAATGCCACCAGCATCGTGTCGACCATGGGCGACCGGTCG----AAGTCCTGGCGCA 36082 Query 1100 CCGATGCTATCCCATGGTCTGAGCACAACACAGAAGCATTCGCAGGGCTGCACAACGAGC 1159 |||| | || | ||||| | | ||||||| || || ||||| || ||||| || || Sbjct 36083 CCGACCTTGTCACCTGGTCGGCGAACAACACCGAGGCGTTCGCCGGCCTGCATAATCAGG 36142 Query 1160 GCAAGCGCATCATCGTGGTATTCGACGAAGCATCCAACATTGCCGATCTGGTGTGGGAAG 1219 ||||||||||| | || | |||||||| || || ||| | | ||||||||| | Sbjct 36143 GCAAGCGCATCGTGCTGATCTTCGACGAGGCGTCAGGCATCATCAACAAGGTGTGGGAGG 36202 Query 1220 TAGCAGAAGGCGCGCTGACGGACGAAGACACCGAAATCATCTGGGTGGCGTTCGGTAACC 1279 | || |||||||| || ||||| || ||||| ||| | ||| | || ||||| || | Sbjct 36203 TCGCGCTCGGCGCGCTCACCGACGAGGATACCGAGATCCTGTGGCTCGCCTTCGGCAATC 36262 Query 1280 CGACGCGTAACACCGGGCGTTTCCGTGAATGTTTCCGCAAGTACAAACACCGCTGGAAG- 1338 | || | |||||||| ||||| || || | ||||| | || |||||| Sbjct 36263 CCACACTCAACACCGGCTCGTTCCGCGACTGCTATGGCAAGAGCCGGAACATGTGGAAGA 36322 Query 1339 TGCGCGCAGATTGACAGCCGCACCGTTGAAGGCACTAACAAGCAGCAGTTGCAGAAGTGG 1398 ||| |||||| || || |||| || || ||||| |||||| | | | | || | Sbjct 36323 CGCG-GCAGATCGATAGTCGCAATGTCGAGGGCACCAACAAGAAATATCTCGACGAGCTG 36381 Query 1399 GTAGACGACTACGGCGAGGAAAGCGACTTTGTTAAAGTTCGTGTGCGCGGAATATTCCC 1457 || | |||||||| ||| ||||| | || || ||||| |||||||| || ||||| Sbjct 36382 GTCACCACCTACGGCGCGGACAGCGATATCGTGAAGGTTCGCGTGCGCGGCATGTTCCC 36440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126802920332814