Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_005056.1
Length=32684
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 159 7e-35
>seq7272
Length=98981
Score = 159 bits (176), Expect = 7e-35
Identities = 646/999 (65%), Gaps = 29/999 (3%)
Strand=Plus/Minus
Query 1537 CACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATGTATTCGACGTT 1596
||||| ||| | ||||| || || || |||| |||||| | ||||| | | |||||
Sbjct 42066 CACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTT 42007
Query 1597 GTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGAGTGGCAAAGTCCATGCCTTTCCA 1656
|||||| || || | | ||||||| ||| ||||| | |||||||| || || |
Sbjct 42006 GTATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAA 41947
Query 1657 CTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGTACCAC 1716
||| ||||| || || | ||| ||||| || | | | ||||| ||||| || ||
Sbjct 41946 CTGCATGCGCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTAC 41887
Query 1717 GCATCCGGCGCTGTCGCCACGGTGTGAC--GGGTCGTAACCAATCCAGACCGGGCGGGAG 1774
|| || |||||| || || | ||||| || ||||||||||| || |
Sbjct 41886 AAGGCCCGCCGAGTCGCCC--GTATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGG 41829
Query 1775 CCGAACGGATTGGCGGCAAACGGCGCATAGTCTTCCCATTCTTCC-AGCGTGTCGACCAT 1833
|| ||||| | || ||| | || ||| | ||| ||| |||| |
Sbjct 41828 CCAAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGC-TGTCCGCATG 41770
Query 1834 GCAGCGTTGCAGCTCCTCGAACGGGAATAC--CGACGCCTTGTCGTCAACAAATTCACAC 1891
|||||| |||| | |||||| || ||| | |||| || ||||| | |||
Sbjct 41769 GCAGCGCATCAGCGTGGACAGCGGGAAAACAGCGAAGG--TGTCATCGACAAACCCGCAC 41712
Query 1892 ATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTGCTCAATGTCGAAC 1951
|||| |||||| | | || ||| | | ||| || | |||| |||||||
Sbjct 41711 ATGAGCAGGTTGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAAC 41652
Query 1952 AATGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCA---CTGGCCG 2008
| ||||||| || | | || ||| | ||||||||||||||||| || | |
Sbjct 41651 AGATTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCC 41592
Query 2009 TCCGCACAGAGAAGACCTCCGGCAAGG-GCGTTATGACTGACGTCGATTTCCACGCGTTC 2067
|| || | | |||| ||||| || ||| ||| ||| || | ||| | || | ||| ||
Sbjct 41591 TC-GC-CGGTGAAG-CCTCCAGCCAGGTGCGA-ATGGCTCAGGTCCAGCTCTATGCGGTC 41536
Query 2068 GGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCGGACCAGAACGGATAGGCGTCGTG 2127
||||||| | ||| | |||| || ||| | || |||||| | |||
Sbjct 41535 CTTTT---TGGCGCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTG 41479
Query 2128 CGCCAGCGTGGACGGGGTGGAGAAATAG-GTCGAGCGCAGGTGACTCTGTGAGGCCATAC 2186
| ||| || || ||||| ||| || ||| |||| || | || ||||||||
Sbjct 41478 CTGCAGGCTGCTGGGCGTGGA-AAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATAC 41420
Query 2187 CTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCGTCGACGTACA 2246
| |||||||| | ||| || || || || ||| || | || |||| || |
Sbjct 41419 CGCTGGCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGA 41360
Query 2247 GGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCGC 2306
| | ||||| | ||| |||||| || | | ||||| || ||| ||| | ||||
Sbjct 41359 GATTGCCGTGGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGC 41300
Query 2307 CGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC---AACCAGCCGGGCAA 2363
| ||||| |||||| || ||||| || ||| || | || | | | |||||
Sbjct 41299 C---ATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCAA 41243
Query 2364 AGGCGATGATGTATTCACGGAACACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCT 2423
| ||||||||||| | ||||| |||| ||||||| |||||||| ||||||||||
Sbjct 41242 ACGCGATGATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCT 41183
Query 2424 GGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGC 2483
| || | || || |||||||| | ||| ||||||||| || || |||| || |
Sbjct 41182 GATTGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCC 41123
Query 2484 CAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCT 2522
| |||||||| ||||| || || |||| |||| ||||
Sbjct 41122 CGATCTGGCGCGATTTGAGAATGGCGCGCGTGCGCTGCT 41084
Score = 127 bits (140), Expect = 4e-25
Identities = 346/524 (66%), Gaps = 12/524 (2%)
Strand=Plus/Minus
Query 16466 GCGCTGGGTCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAC 16525
||| |||| |||||||| |||||| |||||| || ||||| || || ||||| |||
Sbjct 25315 GCGATGGGGCTGCGCGCCCGCATCGACGTGGAGCAAGGTTGGCACAAGACCCTGTCAAAC 25256
Query 16526 GTCGGGGTGAACGGTGTTACCGGCATCAGCGCGTCCGTATTCTGGGATTTGCAGGAGTCC 16585
|| | | || || ||||||||| | ||| | || |||| ||
Sbjct 25255 GTGCCGCTAAATGGCCCGGTGGGCATCAGCAAGGACGTGCATTTCGACCTGCAAAGCTCG 25196
Query 16586 GGCACCGATGCTGACCTGCTTAACGAGTCAGGCGTCACAACGCTGATTCGCCGTGACGGT 16645
| || || || ||||||| || ||| |||||| ||||| || | | ||
Sbjct 25195 GAGACGGACGCAAACCTGCTCAATGAGGGCAACGTCACCACGCTCATCAACTACCAGGGC 25136
Query 16646 TTCCGCTTCTGGGGTAACCGTACCTGCT---CTGATGATCCGCTGTTCCTCTTTGAAAAC 16702
| ||||||||||| || |||||| | || || | |||||| || || |
Sbjct 25135 TATCGCTTCTGGGGATCGCGCACCTGCAGCACCGACGAAC---TGTTCCGATTCGAGTCC 25079
Query 16703 TACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTGGGCGGTG 16762
| ||||| || ||||||||||||||||| ||||| |||| || | | | | ||
Sbjct 25078 AGCGTGCGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTG 25021
Query 16763 --GACAAGCCCAT-CACCGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCCAAA 16819
||||||||||| |||| || | || | |||||||| || ||||||||||||||
Sbjct 25020 TCGACAAGCCCATGCACCCCAGCA-TGGTGAAAGACATCGTGGAAGGCATCAATGCCAAG 24962
Query 16820 TTCCGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTCAGCGAAGAG 16879
||||| || || || | ||||| ||| | || | | |||||| || |||
Sbjct 24961 TTCCGCGAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAG 24902
Query 16880 TCCAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATACCCCG 16939
|||| | ||| | ||||||||||| || ||| | ||||||||||| || ||
Sbjct 24901 GTCAACACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCC 24842
Query 16940 GTGCCTCCTCTTGAAAATCTGACCCTGCGCCAGCGCATTACCGA 16983
||||| || || ||| | ||| | ||||||||||| |||||
Sbjct 24841 GTGCCGCCGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798
Score = 91.5 bits (100), Expect = 3e-14
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 580 CGGCATCGGTAACGTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAATACTTGCGGC 639
||| |||| | | || | ||||||||||||||| || || | ||||||| ||| |
Sbjct 43008 CGGGATCGCTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCC 42949
Query 640 GGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCA 699
| |||||||||||||||||||| |||||||| || | || ||| || || | |||||
Sbjct 42948 GAAACAGCGTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCA 42889
Query 700 GGCCGTACAGCTCCTGATTAATATCCGGCT 729
| || || | ||||| | | ||| ||||
Sbjct 42888 GTCCATAGATTTCCTGGTGCACATCGGGCT 42859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104448518587668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |