Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq7272 159 7e-35 >seq7272 Length=98981 Score = 159 bits (176), Expect = 7e-35 Identities = 646/999 (65%), Gaps = 29/999 (3%) Strand=Plus/Minus Query 1537 CACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATGTATTCGACGTT 1596 ||||| ||| | ||||| || || || |||| |||||| | ||||| | | ||||| Sbjct 42066 CACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTT 42007 Query 1597 GTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGAGTGGCAAAGTCCATGCCTTTCCA 1656 |||||| || || | | ||||||| ||| ||||| | |||||||| || || | Sbjct 42006 GTATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAA 41947 Query 1657 CTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGTACCAC 1716 ||| ||||| || || | ||| ||||| || | | | ||||| ||||| || || Sbjct 41946 CTGCATGCGCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTAC 41887 Query 1717 GCATCCGGCGCTGTCGCCACGGTGTGAC--GGGTCGTAACCAATCCAGACCGGGCGGGAG 1774 || || |||||| || || | ||||| || ||||||||||| || | Sbjct 41886 AAGGCCCGCCGAGTCGCCC--GTATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGG 41829 Query 1775 CCGAACGGATTGGCGGCAAACGGCGCATAGTCTTCCCATTCTTCC-AGCGTGTCGACCAT 1833 || ||||| | || ||| | || ||| | ||| ||| |||| | Sbjct 41828 CCAAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGC-TGTCCGCATG 41770 Query 1834 GCAGCGTTGCAGCTCCTCGAACGGGAATAC--CGACGCCTTGTCGTCAACAAATTCACAC 1891 |||||| |||| | |||||| || ||| | |||| || ||||| | ||| Sbjct 41769 GCAGCGCATCAGCGTGGACAGCGGGAAAACAGCGAAGG--TGTCATCGACAAACCCGCAC 41712 Query 1892 ATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTGCTCAATGTCGAAC 1951 |||| |||||| | | || ||| | | ||| || | |||| ||||||| Sbjct 41711 ATGAGCAGGTTGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAAC 41652 Query 1952 AATGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCA---CTGGCCG 2008 | ||||||| || | | || ||| | ||||||||||||||||| || | | Sbjct 41651 AGATTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCC 41592 Query 2009 TCCGCACAGAGAAGACCTCCGGCAAGG-GCGTTATGACTGACGTCGATTTCCACGCGTTC 2067 || || | | |||| ||||| || ||| ||| ||| || | ||| | || | ||| || Sbjct 41591 TC-GC-CGGTGAAG-CCTCCAGCCAGGTGCGA-ATGGCTCAGGTCCAGCTCTATGCGGTC 41536 Query 2068 GGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCGGACCAGAACGGATAGGCGTCGTG 2127 ||||||| | ||| | |||| || ||| | || |||||| | ||| Sbjct 41535 CTTTT---TGGCGCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTG 41479 Query 2128 CGCCAGCGTGGACGGGGTGGAGAAATAG-GTCGAGCGCAGGTGACTCTGTGAGGCCATAC 2186 | ||| || || ||||| ||| || ||| |||| || | || |||||||| Sbjct 41478 CTGCAGGCTGCTGGGCGTGGA-AAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATAC 41420 Query 2187 CTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCGTCGACGTACA 2246 | |||||||| | ||| || || || || ||| || | || |||| || | Sbjct 41419 CGCTGGCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGA 41360 Query 2247 GGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCGC 2306 | | ||||| | ||| |||||| || | | ||||| || ||| ||| | |||| Sbjct 41359 GATTGCCGTGGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGC 41300 Query 2307 CGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC---AACCAGCCGGGCAA 2363 | ||||| |||||| || ||||| || ||| || | || | | | ||||| Sbjct 41299 C---ATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCAA 41243 Query 2364 AGGCGATGATGTATTCACGGAACACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCT 2423 | ||||||||||| | ||||| |||| ||||||| |||||||| |||||||||| Sbjct 41242 ACGCGATGATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCT 41183 Query 2424 GGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGC 2483 | || | || || |||||||| | ||| ||||||||| || || |||| || | Sbjct 41182 GATTGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCC 41123 Query 2484 CAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCT 2522 | |||||||| ||||| || || |||| |||| |||| Sbjct 41122 CGATCTGGCGCGATTTGAGAATGGCGCGCGTGCGCTGCT 41084 Score = 127 bits (140), Expect = 4e-25 Identities = 346/524 (66%), Gaps = 12/524 (2%) Strand=Plus/Minus Query 16466 GCGCTGGGTCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAC 16525 ||| |||| |||||||| |||||| |||||| || ||||| || || ||||| ||| Sbjct 25315 GCGATGGGGCTGCGCGCCCGCATCGACGTGGAGCAAGGTTGGCACAAGACCCTGTCAAAC 25256 Query 16526 GTCGGGGTGAACGGTGTTACCGGCATCAGCGCGTCCGTATTCTGGGATTTGCAGGAGTCC 16585 || | | || || ||||||||| | ||| | || |||| || Sbjct 25255 GTGCCGCTAAATGGCCCGGTGGGCATCAGCAAGGACGTGCATTTCGACCTGCAAAGCTCG 25196 Query 16586 GGCACCGATGCTGACCTGCTTAACGAGTCAGGCGTCACAACGCTGATTCGCCGTGACGGT 16645 | || || || ||||||| || ||| |||||| ||||| || | | || Sbjct 25195 GAGACGGACGCAAACCTGCTCAATGAGGGCAACGTCACCACGCTCATCAACTACCAGGGC 25136 Query 16646 TTCCGCTTCTGGGGTAACCGTACCTGCT---CTGATGATCCGCTGTTCCTCTTTGAAAAC 16702 | ||||||||||| || |||||| | || || | |||||| || || | Sbjct 25135 TATCGCTTCTGGGGATCGCGCACCTGCAGCACCGACGAAC---TGTTCCGATTCGAGTCC 25079 Query 16703 TACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTGGGCGGTG 16762 | ||||| || ||||||||||||||||| ||||| |||| || | | | | || Sbjct 25078 AGCGTGCGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTG 25021 Query 16763 --GACAAGCCCAT-CACCGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCCAAA 16819 ||||||||||| |||| || | || | |||||||| || |||||||||||||| Sbjct 25020 TCGACAAGCCCATGCACCCCAGCA-TGGTGAAAGACATCGTGGAAGGCATCAATGCCAAG 24962 Query 16820 TTCCGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTCAGCGAAGAG 16879 ||||| || || || | ||||| ||| | || | | |||||| || ||| Sbjct 24961 TTCCGCGAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAG 24902 Query 16880 TCCAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATACCCCG 16939 |||| | ||| | ||||||||||| || ||| | ||||||||||| || || Sbjct 24901 GTCAACACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCC 24842 Query 16940 GTGCCTCCTCTTGAAAATCTGACCCTGCGCCAGCGCATTACCGA 16983 ||||| || || ||| | ||| | ||||||||||| ||||| Sbjct 24841 GTGCCGCCGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798 Score = 91.5 bits (100), Expect = 3e-14 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 580 CGGCATCGGTAACGTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAATACTTGCGGC 639 ||| |||| | | || | ||||||||||||||| || || | ||||||| ||| | Sbjct 43008 CGGGATCGCTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCC 42949 Query 640 GGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCA 699 | |||||||||||||||||||| |||||||| || | || ||| || || | ||||| Sbjct 42948 GAAACAGCGTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCA 42889 Query 700 GGCCGTACAGCTCCTGATTAATATCCGGCT 729 | || || | ||||| | | ||| |||| Sbjct 42888 GTCCATAGATTTCCTGGTGCACATCGGGCT 42859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104448518587668