Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq8257 129 7e-25 seq14417 123 3e-23 seq9313 118 1e-21 seq8280 116 4e-21 seq11094 109 6e-19 seq8050 107 2e-18 seq10996 95.1 1e-14 seq11622 93.3 5e-14 seq9639 86.0 7e-12 >seq8257 Length=88174 Score = 129 bits (142), Expect = 7e-25 Identities = 191/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 6963 CCAAGGACATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGT 7022 ||||| ||| | | ||| | |||||| || || || | || | |||||||| || Sbjct 80459 CCAAGCTCATGCCTAAAACAGTATCACCTGGGTTAAGTAAAGCAAGATAAACTGCTGAGT 80518 Query 7023 TTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAG 7082 ||||||| ||||| | ||| |||||||| ||||| | | || ||| | | |||||| Sbjct 80519 TTGCTTGAGAACCTGCATGTGGTTGAACATTTGCATAGTCAGCACCAAATAATGCTTTAG 80578 Query 7083 CACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTT 7142 |||| || || |||| | ||||| |||| | | | | || ||||||||||| || | Sbjct 80579 CACGATCGATCGCCAATTGTTCGATCACATCAACATATTCACAACCGCCATAATAGCGCT 80638 Query 7143 TGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACAT 7202 |||| || || || || ||||| ||||| || | | || || ||||||| ||||||| Sbjct 80639 TGCCAGGGTAACCTTCCGCATATTTGTTAGTGAGTTTTGACCCTTGTGCTTCCATAACAG 80698 Query 7203 CGTCTGACACATAGTTTTCGGACGCAATCAA 7233 | ||| ||||||||| || || || || Sbjct 80699 CTGGTGAGCAATAGTTTTCAGATGCGATTAA 80729 Score = 105 bits (116), Expect = 7e-18 Identities = 173/246 (70%), Gaps = 14/246 (6%) Strand=Plus/Plus Query 6482 GCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATA 6541 ||||| ||| |||| |||||| |||||||| |||||| | || |||||||| || Sbjct 79987 GCTTCTTTAAAGCAAATTGCTTTTGCTGCGATCGCATGAACCAATGGACCGCCTTGGTTA 80046 Query 6542 CCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCAT---CGTTAGTAAGAATG 6598 |||||||| | |||||| | | ||| || | || || | | | || | ||| || Sbjct 80047 CCCGGGAATACAGCAGACTGAAGTTTTTTCTCAATTTCTTCGTTTGCTTTTGCAAGGATT 80106 Query 6599 AGGCCACCACGAGGGCCGCGCAAAGTTTTATG---AGTTGTAGTAGTAACAACGTCGGCA 6655 | ||| ||| || || |||||||||||||| |||||| || || ||| || ||| Sbjct 80107 AAACCAGAACGTGGACCACGCAAAGTTTTATGCGTAGTTGTGGTTGTTACA---TCAGCA 80163 Query 6656 CCCCATTTG-AGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCAT 6714 ||||| | |||| | | || | || ||||||||| || ||||||| || ||||| Sbjct 80164 ----ATTTGCACTGGACTTGGGTATACACCAGCAGCAACTAAACCAGCAACGTGAGCCAT 80219 Query 6715 ATCGAC 6720 ||| || Sbjct 80220 ATCTAC 80225 >seq14417 Length=43923 Score = 123 bits (136), Expect = 3e-23 Identities = 185/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || | |||||||||| | ||| | ||| |||| | | || ||||||| | Sbjct 8229 CCGTGCGTCAAATGGCCGCCGGCGGCCAGGTCCATGCCGAGGAAGGTGTCGCCCGGCTGC 8288 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || | | || |||||||| || || || || || || || ||||| || ||| Sbjct 8289 AGCAGGGCCATGAACACCGCCTGGTTGGCCTGCGAGCCCGAGTGCGGCTGAACATTGGCG 8348 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 || | | || || | || || || ||||| || | | | ||||| |||||| | Sbjct 8349 AAGCCGGCGCCGAATAGCGCCTTGGCGCGTTCAATGGCGATGGTTTCGATCTCATCGACA 8408 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | | |||| ||||| ||||| || ||||| ||||| ||||| || ||||||||||| | Sbjct 8409 TATTCGCAACCGCCGTAATAGCGCTTGCCGGGATAGCCCTCGGCGTACTTGTTGGTCAGG 8468 Query 7178 ATAGAACCCTGTGCTTTCATAAC 7200 || || ||||| || | || ||| Sbjct 8469 ATCGAGCCCTGAGCCTGCAGAAC 8491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 168/247 (68%), Gaps = 13/247 (5%) Strand=Plus/Plus Query 6497 ACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAGATAGCA 6556 || || || || ||||| ||||| || ||||||||||| | |||||||||| || Sbjct 7800 ACGGCCTTGGCGGCGATGACATGCTCGAGGGGGCCGCCTTGCAGGCCCGGGAAGACGGCC 7859 Query 6557 GAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGGCCACCACGAGGGCCG 6616 ||||| || ||||| ||| | | ||||| || || | ||||| || || |||||| Sbjct 7860 GAATTGACCTTCTTTATGATGGCCTCGTCGTTGGTCAGCACCAGGCCGCCGCGCGGGCCG 7919 Query 6617 CGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCCCATTTGAGTGGATTAG-- 6674 |||| || || || || || || || || |||| ||| || | |||| | Sbjct 7920 CGCAGGGTCTTGTGCGTCGTGGTGGTGACGACGTGGGC-------GTGCG-GGATCGGGC 7971 Query 6675 -CGTGAAGACG--AGCAGCAACAAAGCCAGCAAAATGGGCCATATCGACCATCAATTTGG 6731 | ||||||| | || || | || || ||||||||||| |||||||||| | || Sbjct 7972 TGGGGAAGACGCCGCCCGCCACCAGTCCGGCGAAATGGGCCATGTCGACCATCAGATAGG 8031 Query 6732 CTCCAAT 6738 | || || Sbjct 8032 CGCCGAT 8038 >seq9313 Length=323745 Score = 118 bits (130), Expect = 1e-21 Identities = 203/295 (69%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| ||||||||||||||| | | | | | | | | | || ||||||| | Sbjct 172255 CCGTGGGTGAGATGGCCGCCGGAATTGAGGTCGAGGCCCATGAAGGTGTCGCCCGGCTGC 172196 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || || | || |||||||| || |||||||||| || || ||||| ||| Sbjct 172195 AGCAGCGCCAGGAACACGGCCTGGTTCATCTGGGAACCGGAATTCGGCTGGACGTTGGCG 172136 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 || ||||| |||||| | || || ||||| || || || | ||| | ||| | Sbjct 172135 AAGTTGCAGGAAAACAGCTTCTTGGCGCGCTCGATGGCGAGCTCTTCGGCGACGTCGACG 172076 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 |||||||||||| || || ||||||||||| ||||| ||||| |||||||| | Sbjct 172075 AACTGGCAGCCGCCATAGTAGCGCTTGCCCGGATAACCCTCGGCATATTTGTTGGTCATG 172016 Query 7178 ATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 || || ||||| || | || ||| || || || |||||| || || |||| Sbjct 172015 ATCGAGCCCTGCGCCTCCAGAACGGCGCGCGAGACGATGTTTTCCGAGGCGATCA 171961 >seq8280 Length=144189 Score = 116 bits (128), Expect = 4e-21 Identities = 174/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 6986 TCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGT 7045 || ||||||| ||| || || | | || |||||||| || || | || || || || Sbjct 53853 TCGCCCGGCTGCAGCAGCGCCATGAACACCGCCTGGTTGGCCTGGGCGCCCGAGTGCGGC 53912 Query 7046 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7105 || ||||| ||||| | ||||| | || || ||||| || |||||||||||| Sbjct 53913 TGGACGTTGGCGAAGCCGGCCTCGAACAGCTGCTTGGCCCGCTCGATGGCCAGGTTCTCG 53972 Query 7106 ATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATAC 7165 | | ||| | | | ||||||||||||| || || ||||||||| ||||| || ||| Sbjct 53973 ACGACGTCGACATATTCGCAGCCGCCATAGTAGCGACGGCCCGGATAGCCCTCGGCGTAC 54032 Query 7166 TTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGAC 7225 |||||||| | || |||||||| || | || || || || || ||| |||||| Sbjct 54033 TTGTTGGTCAGGATCGAACCCTGGGCCTCCAGCACGGCGCGCGAGACGATGTTCTCGGAC 54092 Query 7226 GCAATCA 7232 || |||| Sbjct 54093 GCGATCA 54099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 6524 AGCGGGCCGCCTTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCA 6583 ||||||||||| || | || ||||| | || ||||| | ||||||||||| || || Sbjct 53403 AGCGGGCCGCCCTGCAGGCCGGGGAACACCGCCGAATTGATCTTCTTGGCGATCTCGGCG 53462 Query 6584 TCGTTAGTAAGAATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTA 6643 ||||| || || | ||||| || || |||||||||| || || ||||| || || || Sbjct 53463 TCGTTGGTCAGCACCAGGCCGCCGCGCGGGCCGCGCAGGGTCTTGTGAGTGGTGGTGGTG 53522 Query 6644 ACAACGTCGGC 6654 || |||| ||| Sbjct 53523 ACGACGTGGGC 53533 >seq11094 Length=11887 Score = 109 bits (120), Expect = 6e-19 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 6986 TCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGT 7045 || || |||| ||||| || |||| || ||||||| || || || || || || Sbjct 1896 TCGCCGGGCTCCAGGAACGCCAGGTACACGCCCTGGTTGGCCTGGCTGCCCGAGTGCGGC 1955 Query 7046 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7105 || ||||| ||| ||| | ||||| | || |||||| |||| ||||||||||| Sbjct 1956 TGCACGTTGGCGCGCGCGCAGCCGAACAGCGCCTTGGCACGCGCAATGGCCAGGTTCTCC 2015 Query 7106 ATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATAC 7165 | ||||||| || |||||||||| || || || ||| ||||| ||||| || || Sbjct 2016 ACGGCATCGGCATTGGCGCAGCCGCCGTAGTAGCGCACGCCGGGATAGCCCTCGGCGTAT 2075 Query 7166 TTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGAC 7225 |||||||| | | || ||||| || | ||| || || ||| ||||||| || Sbjct 2076 TTGTTGGTCAGCACCGAGCCCTGCGCCTCCATCACCGCGCGGCTCACGAAGTTTTCAGAG 2135 Query 7226 GCAATCAA 7233 |||||||| Sbjct 2136 GCAATCAA 2143 >seq8050 Length=287393 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 6985 ATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGG 7044 ||| ||||||| ||| || || || | || |||||||| || |||||||||| || Sbjct 186464 ATCGCCCGGCTGCAGCAGCGCGAGGAACACGGCCTGGTTCATCTGCGAACCGGAATTCGG 186405 Query 7045 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT- 7103 || ||||| ||||| ||| | ||||| | || || ||||| || || || |||| Sbjct 186404 CTGGACGTTGGCGAAGTTGACGCCGAACAGCTTCTTGGCGCGCTCGATGGCGAG-TTCTT 186346 Query 7104 ---CGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAG 7160 |||| || || | ||||||||| ||||| || ||||||||||| || || | Sbjct 186345 CAGCGATGTCGACGAACTG---GCAGCCGCCGTAATAACGCTTGCCCGGATAACCTTCCG 186289 Query 7161 CATACTTGTTGGTAAAAATAGAACCCTGTGCTT 7193 |||| |||||||| | || |||||||| |||| Sbjct 186288 CATATTTGTTGGTCATGATCGAACCCTGCGCTT 186256 >seq10996 Length=378002 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 6985 ATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGG 7044 ||| ||||||| || || || | | || | |||||| || || |||||||| || Sbjct 203152 ATCGCCCGGCTGCATCAGCGCCATGAACACCGACTGGTTGGCCTGGCTGCCGGAATGCGG 203211 Query 7045 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC 7104 ||| || || |||||| ||| | ||||||| || ||||| ||||| | ||| Sbjct 203212 TTGCACATTGGCGAAAGCGCAGCCGAACAGTTGCCGGGCCCGCTCGCGCGCCAGTTCCTC 203271 Query 7105 GATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATA 7164 || || ||| | | | ||| ||||||||||| || |||||||| ||||| || || Sbjct 203272 GACCTCGTCGACATATTGGCAACCGCCATAATAACGACGACCCGGATAGCCCTCGGCGTA 203331 Query 7165 CTTGTTGGTAAAAATAGAACCCTGTGC 7191 |||||||| | || |||||||| || Sbjct 203332 TTTGTTGGTCAGAACCGAACCCTGGGC 203358 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 6479 AGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGA 6538 || || || ||||| || || || || ||||| ||||| | ||||| ||||| || Sbjct 202658 AGCGCCTCGCCAAAGGCCACCGCCTTGGCGGCGATGACATGCATCAGCGGTCCGCCCTGC 202717 Query 6539 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6598 | || ||||| | || ||||| || ||||||| ||| || | ||||| || || | Sbjct 202718 AGGCCGGGGAACACCGCCGAATTGACCTTCTTGGAGATCTCCTCGTCGTTGGTGAGCACC 202777 Query 6599 AGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAAC 6648 | ||| || || ||||||||||| ||||| || || || || || || || Sbjct 202778 ATGCCGCCGCGCGGGCCGCGCAAGGTTTTGTGGGTGGTGGTGGTCACGAC 202827 >seq11622 Length=276999 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 55137 AAGCAGGAATCGCGATCGCAGCGAGTATAGCAATAATCACAACAACGATCATAAGTTCGA 55196 ||||||||||||| |||||||| || ||| |||||||| ||||||||||||| | ||||| Sbjct 96036 AAGCAGGAATCGCAATCGCAGCAAGGATACCAATAATCGCAACAACGATCATTAATTCGA 95977 Query 55197 TCAGTGTAAAACCTTT 55212 | || |||||||| || Sbjct 95976 TAAGAGTAAAACCCTT 95961 >seq9639 Length=103419 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 7013 ACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAAC 7072 || |||||||| || || || ||||| | || |||||||| || | | | ||| Sbjct 20349 ACGGCCTGGTTGGCCTGGGAGCCGGAGTTGGGCTGAACGTTGGCTGCCTCGGCGCCGAAC 20408 Query 7073 AG-TTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCC 7131 || ||||| | |||| || || || || | ||||| | ||| | ||| |||||||||| Sbjct 20409 AGCTTCTTGA-CACGGTCGATGGCAAGCTGCTCGACCACGTCGACGTTTTCGCAGCCGCC 20467 Query 7132 ATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGC 7191 || || || ||||| ||||| || || || ||||||||||| | || ||||| || Sbjct 20468 GTAGTAGCGCTTGCCTGGATAGCCTTCTGCGTACTTGTTGGTGAGCTGGGAGCCCTGGGC 20527 Query 7192 TTTCATAAC 7200 || ||| || Sbjct 20528 TTCCATCAC 20536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555258659819640