Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_005135.1
Length=173591
Score E
Sequences producing significant alignments: (Bits) Value
seq8257 129 7e-25
seq14417 123 3e-23
seq9313 118 1e-21
seq8280 116 4e-21
seq11094 109 6e-19
seq8050 107 2e-18
seq10996 95.1 1e-14
seq11622 93.3 5e-14
seq9639 86.0 7e-12
>seq8257
Length=88174
Score = 129 bits (142), Expect = 7e-25
Identities = 191/271 (70%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 6963 CCAAGGACATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGT 7022
||||| ||| | | ||| | |||||| || || || | || | |||||||| ||
Sbjct 80459 CCAAGCTCATGCCTAAAACAGTATCACCTGGGTTAAGTAAAGCAAGATAAACTGCTGAGT 80518
Query 7023 TTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAG 7082
||||||| ||||| | ||| |||||||| ||||| | | || ||| | | ||||||
Sbjct 80519 TTGCTTGAGAACCTGCATGTGGTTGAACATTTGCATAGTCAGCACCAAATAATGCTTTAG 80578
Query 7083 CACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTT 7142
|||| || || |||| | ||||| |||| | | | | || ||||||||||| || |
Sbjct 80579 CACGATCGATCGCCAATTGTTCGATCACATCAACATATTCACAACCGCCATAATAGCGCT 80638
Query 7143 TGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACAT 7202
|||| || || || || ||||| ||||| || | | || || ||||||| |||||||
Sbjct 80639 TGCCAGGGTAACCTTCCGCATATTTGTTAGTGAGTTTTGACCCTTGTGCTTCCATAACAG 80698
Query 7203 CGTCTGACACATAGTTTTCGGACGCAATCAA 7233
| ||| ||||||||| || || || ||
Sbjct 80699 CTGGTGAGCAATAGTTTTCAGATGCGATTAA 80729
Score = 105 bits (116), Expect = 7e-18
Identities = 173/246 (70%), Gaps = 14/246 (6%)
Strand=Plus/Plus
Query 6482 GCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATA 6541
||||| ||| |||| |||||| |||||||| |||||| | || |||||||| ||
Sbjct 79987 GCTTCTTTAAAGCAAATTGCTTTTGCTGCGATCGCATGAACCAATGGACCGCCTTGGTTA 80046
Query 6542 CCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCAT---CGTTAGTAAGAATG 6598
|||||||| | |||||| | | ||| || | || || | | | || | ||| ||
Sbjct 80047 CCCGGGAATACAGCAGACTGAAGTTTTTTCTCAATTTCTTCGTTTGCTTTTGCAAGGATT 80106
Query 6599 AGGCCACCACGAGGGCCGCGCAAAGTTTTATG---AGTTGTAGTAGTAACAACGTCGGCA 6655
| ||| ||| || || |||||||||||||| |||||| || || ||| || |||
Sbjct 80107 AAACCAGAACGTGGACCACGCAAAGTTTTATGCGTAGTTGTGGTTGTTACA---TCAGCA 80163
Query 6656 CCCCATTTG-AGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCAT 6714
||||| | |||| | | || | || ||||||||| || ||||||| || |||||
Sbjct 80164 ----ATTTGCACTGGACTTGGGTATACACCAGCAGCAACTAAACCAGCAACGTGAGCCAT 80219
Query 6715 ATCGAC 6720
||| ||
Sbjct 80220 ATCTAC 80225
>seq14417
Length=43923
Score = 123 bits (136), Expect = 3e-23
Identities = 185/263 (70%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997
||||| || | |||||||||| | ||| | ||| |||| | | || ||||||| |
Sbjct 8229 CCGTGCGTCAAATGGCCGCCGGCGGCCAGGTCCATGCCGAGGAAGGTGTCGCCCGGCTGC 8288
Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057
|| || || | | || |||||||| || || || || || || || ||||| || |||
Sbjct 8289 AGCAGGGCCATGAACACCGCCTGGTTGGCCTGCGAGCCCGAGTGCGGCTGAACATTGGCG 8348
Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117
|| | | || || | || || || ||||| || | | | ||||| |||||| |
Sbjct 8349 AAGCCGGCGCCGAATAGCGCCTTGGCGCGTTCAATGGCGATGGTTTCGATCTCATCGACA 8408
Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177
| | |||| ||||| ||||| || ||||| ||||| ||||| || ||||||||||| |
Sbjct 8409 TATTCGCAACCGCCGTAATAGCGCTTGCCGGGATAGCCCTCGGCGTACTTGTTGGTCAGG 8468
Query 7178 ATAGAACCCTGTGCTTTCATAAC 7200
|| || ||||| || | || |||
Sbjct 8469 ATCGAGCCCTGAGCCTGCAGAAC 8491
Score = 84.2 bits (92), Expect = 2e-11
Identities = 168/247 (68%), Gaps = 13/247 (5%)
Strand=Plus/Plus
Query 6497 ACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAGATAGCA 6556
|| || || || ||||| ||||| || ||||||||||| | |||||||||| ||
Sbjct 7800 ACGGCCTTGGCGGCGATGACATGCTCGAGGGGGCCGCCTTGCAGGCCCGGGAAGACGGCC 7859
Query 6557 GAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGGCCACCACGAGGGCCG 6616
||||| || ||||| ||| | | ||||| || || | ||||| || || ||||||
Sbjct 7860 GAATTGACCTTCTTTATGATGGCCTCGTCGTTGGTCAGCACCAGGCCGCCGCGCGGGCCG 7919
Query 6617 CGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCCCATTTGAGTGGATTAG-- 6674
|||| || || || || || || || || |||| ||| || | |||| |
Sbjct 7920 CGCAGGGTCTTGTGCGTCGTGGTGGTGACGACGTGGGC-------GTGCG-GGATCGGGC 7971
Query 6675 -CGTGAAGACG--AGCAGCAACAAAGCCAGCAAAATGGGCCATATCGACCATCAATTTGG 6731
| ||||||| | || || | || || ||||||||||| |||||||||| | ||
Sbjct 7972 TGGGGAAGACGCCGCCCGCCACCAGTCCGGCGAAATGGGCCATGTCGACCATCAGATAGG 8031
Query 6732 CTCCAAT 6738
| || ||
Sbjct 8032 CGCCGAT 8038
>seq9313
Length=323745
Score = 118 bits (130), Expect = 1e-21
Identities = 203/295 (69%), Gaps = 0/295 (0%)
Strand=Plus/Minus
Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997
||||| ||||||||||||||| | | | | | | | | | || ||||||| |
Sbjct 172255 CCGTGGGTGAGATGGCCGCCGGAATTGAGGTCGAGGCCCATGAAGGTGTCGCCCGGCTGC 172196
Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057
|| || || || | || |||||||| || |||||||||| || || ||||| |||
Sbjct 172195 AGCAGCGCCAGGAACACGGCCTGGTTCATCTGGGAACCGGAATTCGGCTGGACGTTGGCG 172136
Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117
|| ||||| |||||| | || || ||||| || || || | ||| | ||| |
Sbjct 172135 AAGTTGCAGGAAAACAGCTTCTTGGCGCGCTCGATGGCGAGCTCTTCGGCGACGTCGACG 172076
Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177
|||||||||||| || || ||||||||||| ||||| ||||| |||||||| |
Sbjct 172075 AACTGGCAGCCGCCATAGTAGCGCTTGCCCGGATAACCCTCGGCATATTTGTTGGTCATG 172016
Query 7178 ATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCA 7232
|| || ||||| || | || ||| || || || |||||| || || ||||
Sbjct 172015 ATCGAGCCCTGCGCCTCCAGAACGGCGCGCGAGACGATGTTTTCCGAGGCGATCA 171961
>seq8280
Length=144189
Score = 116 bits (128), Expect = 4e-21
Identities = 174/247 (70%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 6986 TCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGT 7045
|| ||||||| ||| || || | | || |||||||| || || | || || || ||
Sbjct 53853 TCGCCCGGCTGCAGCAGCGCCATGAACACCGCCTGGTTGGCCTGGGCGCCCGAGTGCGGC 53912
Query 7046 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7105
|| ||||| ||||| | ||||| | || || ||||| || ||||||||||||
Sbjct 53913 TGGACGTTGGCGAAGCCGGCCTCGAACAGCTGCTTGGCCCGCTCGATGGCCAGGTTCTCG 53972
Query 7106 ATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATAC 7165
| | ||| | | | ||||||||||||| || || ||||||||| ||||| || |||
Sbjct 53973 ACGACGTCGACATATTCGCAGCCGCCATAGTAGCGACGGCCCGGATAGCCCTCGGCGTAC 54032
Query 7166 TTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGAC 7225
|||||||| | || |||||||| || | || || || || || ||| ||||||
Sbjct 54033 TTGTTGGTCAGGATCGAACCCTGGGCCTCCAGCACGGCGCGCGAGACGATGTTCTCGGAC 54092
Query 7226 GCAATCA 7232
|| ||||
Sbjct 54093 GCGATCA 54099
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 6524 AGCGGGCCGCCTTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCA 6583
||||||||||| || | || ||||| | || ||||| | ||||||||||| || ||
Sbjct 53403 AGCGGGCCGCCCTGCAGGCCGGGGAACACCGCCGAATTGATCTTCTTGGCGATCTCGGCG 53462
Query 6584 TCGTTAGTAAGAATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTA 6643
||||| || || | ||||| || || |||||||||| || || ||||| || || ||
Sbjct 53463 TCGTTGGTCAGCACCAGGCCGCCGCGCGGGCCGCGCAGGGTCTTGTGAGTGGTGGTGGTG 53522
Query 6644 ACAACGTCGGC 6654
|| |||| |||
Sbjct 53523 ACGACGTGGGC 53533
>seq11094
Length=11887
Score = 109 bits (120), Expect = 6e-19
Identities = 173/248 (70%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 6986 TCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGT 7045
|| || |||| ||||| || |||| || ||||||| || || || || || ||
Sbjct 1896 TCGCCGGGCTCCAGGAACGCCAGGTACACGCCCTGGTTGGCCTGGCTGCCCGAGTGCGGC 1955
Query 7046 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7105
|| ||||| ||| ||| | ||||| | || |||||| |||| |||||||||||
Sbjct 1956 TGCACGTTGGCGCGCGCGCAGCCGAACAGCGCCTTGGCACGCGCAATGGCCAGGTTCTCC 2015
Query 7106 ATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATAC 7165
| ||||||| || |||||||||| || || || ||| ||||| ||||| || ||
Sbjct 2016 ACGGCATCGGCATTGGCGCAGCCGCCGTAGTAGCGCACGCCGGGATAGCCCTCGGCGTAT 2075
Query 7166 TTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGAC 7225
|||||||| | | || ||||| || | ||| || || ||| ||||||| ||
Sbjct 2076 TTGTTGGTCAGCACCGAGCCCTGCGCCTCCATCACCGCGCGGCTCACGAAGTTTTCAGAG 2135
Query 7226 GCAATCAA 7233
||||||||
Sbjct 2136 GCAATCAA 2143
>seq8050
Length=287393
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 6985 ATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGG 7044
||| ||||||| ||| || || || | || |||||||| || |||||||||| ||
Sbjct 186464 ATCGCCCGGCTGCAGCAGCGCGAGGAACACGGCCTGGTTCATCTGCGAACCGGAATTCGG 186405
Query 7045 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT- 7103
|| ||||| ||||| ||| | ||||| | || || ||||| || || || ||||
Sbjct 186404 CTGGACGTTGGCGAAGTTGACGCCGAACAGCTTCTTGGCGCGCTCGATGGCGAG-TTCTT 186346
Query 7104 ---CGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAG 7160
|||| || || | ||||||||| ||||| || ||||||||||| || || |
Sbjct 186345 CAGCGATGTCGACGAACTG---GCAGCCGCCGTAATAACGCTTGCCCGGATAACCTTCCG 186289
Query 7161 CATACTTGTTGGTAAAAATAGAACCCTGTGCTT 7193
|||| |||||||| | || |||||||| ||||
Sbjct 186288 CATATTTGTTGGTCATGATCGAACCCTGCGCTT 186256
>seq10996
Length=378002
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 6985 ATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGG 7044
||| ||||||| || || || | | || | |||||| || || |||||||| ||
Sbjct 203152 ATCGCCCGGCTGCATCAGCGCCATGAACACCGACTGGTTGGCCTGGCTGCCGGAATGCGG 203211
Query 7045 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC 7104
||| || || |||||| ||| | ||||||| || ||||| ||||| | |||
Sbjct 203212 TTGCACATTGGCGAAAGCGCAGCCGAACAGTTGCCGGGCCCGCTCGCGCGCCAGTTCCTC 203271
Query 7105 GATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATA 7164
|| || ||| | | | ||| ||||||||||| || |||||||| ||||| || ||
Sbjct 203272 GACCTCGTCGACATATTGGCAACCGCCATAATAACGACGACCCGGATAGCCCTCGGCGTA 203331
Query 7165 CTTGTTGGTAAAAATAGAACCCTGTGC 7191
|||||||| | || |||||||| ||
Sbjct 203332 TTTGTTGGTCAGAACCGAACCCTGGGC 203358
Score = 86.0 bits (94), Expect = 7e-12
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 6479 AGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGA 6538
|| || || ||||| || || || || ||||| ||||| | ||||| ||||| ||
Sbjct 202658 AGCGCCTCGCCAAAGGCCACCGCCTTGGCGGCGATGACATGCATCAGCGGTCCGCCCTGC 202717
Query 6539 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6598
| || ||||| | || ||||| || ||||||| ||| || | ||||| || || |
Sbjct 202718 AGGCCGGGGAACACCGCCGAATTGACCTTCTTGGAGATCTCCTCGTCGTTGGTGAGCACC 202777
Query 6599 AGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAAC 6648
| ||| || || ||||||||||| ||||| || || || || || || ||
Sbjct 202778 ATGCCGCCGCGCGGGCCGCGCAAGGTTTTGTGGGTGGTGGTGGTCACGAC 202827
>seq11622
Length=276999
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 55137 AAGCAGGAATCGCGATCGCAGCGAGTATAGCAATAATCACAACAACGATCATAAGTTCGA 55196
||||||||||||| |||||||| || ||| |||||||| ||||||||||||| | |||||
Sbjct 96036 AAGCAGGAATCGCAATCGCAGCAAGGATACCAATAATCGCAACAACGATCATTAATTCGA 95977
Query 55197 TCAGTGTAAAACCTTT 55212
| || |||||||| ||
Sbjct 95976 TAAGAGTAAAACCCTT 95961
>seq9639
Length=103419
Score = 86.0 bits (94), Expect = 7e-12
Identities = 134/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 7013 ACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAAC 7072
|| |||||||| || || || ||||| | || |||||||| || | | | |||
Sbjct 20349 ACGGCCTGGTTGGCCTGGGAGCCGGAGTTGGGCTGAACGTTGGCTGCCTCGGCGCCGAAC 20408
Query 7073 AG-TTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCC 7131
|| ||||| | |||| || || || || | ||||| | ||| | ||| ||||||||||
Sbjct 20409 AGCTTCTTGA-CACGGTCGATGGCAAGCTGCTCGACCACGTCGACGTTTTCGCAGCCGCC 20467
Query 7132 ATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGC 7191
|| || || ||||| ||||| || || || ||||||||||| | || ||||| ||
Sbjct 20468 GTAGTAGCGCTTGCCTGGATAGCCTTCTGCGTACTTGTTGGTGAGCTGGGAGCCCTGGGC 20527
Query 7192 TTTCATAAC 7200
|| ||| ||
Sbjct 20528 TTCCATCAC 20536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555258659819640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |