Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 324 1e-83
seq608 114 1e-20
seq7661 84.2 2e-11
>seq8995
Length=8301158
Score = 324 bits (358), Expect = 1e-83
Identities = 614/897 (68%), Gaps = 24/897 (3%)
Strand=Plus/Plus
Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900
||||||||| || |||| | |||| ||||| ||||| || ||||| ||||| || ||
Sbjct 6971355 ATTTGACATCACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTT 6971414
Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT-----TCGAACAATAGTAT 12955
|| || | ||||||||||||||||| || || ||||||| | ||| |
Sbjct 6971415 CCCCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACC----- 6971469
Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015
|| || | || | || || | | ||| || || || ||||| |||||||| |||||
Sbjct 6971470 TTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATC 6971529
Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075
||| || ||||| || || | || ||||||| || || || | || | | ||||
Sbjct 6971530 AAAGTGCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCT 6971589
Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-TG--AT 13132
|| |||||| | || | ||| || ||| ||| ||| | | ||| || || |
Sbjct 6971590 ATCCTAACTGCATTGACGATTATTTC-CTT--TACTCTCTGTTTCGAAGGTTTGTGCAAC 6971646
Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192
|| || || ||||||| || | ||| ||||||||||| || |||||||| || || ||
Sbjct 6971647 AGGTGTTTGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGT 6971706
Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252
|| || ||||| || || || ||||| || |||||||| || | ||| ||||||| |||
Sbjct 6971707 TCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCA 6971766
Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312
|| ||||| ||||| || || ||||| ||||| ||||| |||| || | ||| |||||
Sbjct 6971767 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATAT 6971826
Query 13313 GTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372
||| | ||| | | |||| |||||| | ||| || | || || || |
Sbjct 6971827 GTAGCTTCTTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGC 6971886
Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCT 13432
|| | || || || || || | | | | |||| || ||| ||| ||||| ||
Sbjct 6971887 ATCGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCA 6971946
Query 13433 ATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492
|| | | ||||||||||| ||||| || |||||||| || |||||||| ||||| |||
Sbjct 6971947 ATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 6972006
Query 13493 CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACT 13552
|| |||||| | | ||||||||| | ||| | || | |||||||| || |||
Sbjct 6972007 CAAGGAGCCTCGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACT 6972066
Query 13553 ATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTT 13608
|| || ||||| || ||||| ||||| || | || |||||| | | | || |
Sbjct 6972067 ATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGC 6972126
Query 13609 TTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCA 13668
||| | ||| ||| | ||| || || || | || ||||||||| | |||||
Sbjct 6972127 TTC--AGGGCTT--CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCA 6972182
Query 13669 AAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAA 13725
||| ||||| |||| |||||||||||| ||| ||||| | || | || |||||
Sbjct 6972183 AAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 6972239
Score = 215 bits (238), Expect = 4e-51
Identities = 339/481 (70%), Gaps = 16/481 (3%)
Strand=Plus/Plus
Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902
||||||| || |||| | ||||| |||| ||||| || ||||| ||||| || || |
Sbjct 6968489 TTGACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 6968548
Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT-----TCGAACAATAGTATTT 12957
| || | ||||||||||||||||| || || ||||||| | ||| | ||
Sbjct 6968549 CCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACC-----TT 6968603
Query 12958 TTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAA 13017
|| | || | || || | | ||| || || || ||||| |||||||| ||||| ||
Sbjct 6968604 GCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAA 6968663
Query 13018 ATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTAT 13077
| || ||||| || || | || ||||||| || || || | || | | ||||||
Sbjct 6968664 AGTGCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTAT 6968723
Query 13078 ATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-TG--ATAG 13134
|||||| | || | ||| || ||| ||| ||| | | ||| || || | ||
Sbjct 6968724 CCTAACTGCATTGACGATTATTTC-CTT--TACTCTCTGTTTCGAAGGTTTGTGCAACAG 6968780
Query 13135 ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTC 13194
|| || ||||||| || | ||| ||||||||||| || |||||||| || || || ||
Sbjct 6968781 GTGTTTGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTC 6968840
Query 13195 GTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254
|| ||||| || || || ||||| || |||||||| || | ||| ||||||| |||||
Sbjct 6968841 ATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAA 6968900
Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314
||||| ||||| || || ||||| ||||| ||||| |||| || | ||| ||||| ||
Sbjct 6968901 AGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGT 6968960
Query 13315 A 13315
|
Sbjct 6968961 A 6968961
>seq608
Length=3558542
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || ||||| || ||||| || || || ||||| || |||| ||| |
Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| |
Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2088483
Query 13293 CTATCAACCTTTCACC 13308
| | || |||||| ||
Sbjct 2088482 CCACCACCCTTTCCCC 2088467
Score = 82.4 bits (90), Expect = 7e-11
Identities = 105/142 (74%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859
|||||||||| ||||| | || |||| ||| || || | || |||||| | |
Sbjct 2099025 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTT-TCTGCCATAACTGCAAAA 2098967
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
||||| || ||||| ||| ||||| || |||||||| || ||||| ||||| |||
Sbjct 2098966 CGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTT 2098907
Query 12920 TCCATAAAATCGAAAGGATTTT 12941
||||||||||| || |||||||
Sbjct 2098906 TCCATAAAATCAAAGGGATTTT 2098885
>seq7661
Length=1898141
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479
||||||||| || || | | ||||||||||| ||||| || |||||||| || |||||
Sbjct 816923 AATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 816864
Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
||| ||||| ||||| |||||| | | |||||||||
Sbjct 816863 GAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTC 816825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430903301126718
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |