Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq8995 324 1e-83 seq608 114 1e-20 seq7661 84.2 2e-11 >seq8995 Length=8301158 Score = 324 bits (358), Expect = 1e-83 Identities = 614/897 (68%), Gaps = 24/897 (3%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||||||||| || |||| | |||| ||||| ||||| || ||||| ||||| || || Sbjct 6971355 ATTTGACATCACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTT 6971414 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT-----TCGAACAATAGTAT 12955 || || | ||||||||||||||||| || || ||||||| | ||| | Sbjct 6971415 CCCCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACC----- 6971469 Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 || || | || | || || | | ||| || || || ||||| |||||||| ||||| Sbjct 6971470 TTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATC 6971529 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075 ||| || ||||| || || | || ||||||| || || || | || | | |||| Sbjct 6971530 AAAGTGCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCT 6971589 Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-TG--AT 13132 || |||||| | || | ||| || ||| ||| ||| | | ||| || || | Sbjct 6971590 ATCCTAACTGCATTGACGATTATTTC-CTT--TACTCTCTGTTTCGAAGGTTTGTGCAAC 6971646 Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 || || || ||||||| || | ||| ||||||||||| || |||||||| || || || Sbjct 6971647 AGGTGTTTGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGT 6971706 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 || || ||||| || || || ||||| || |||||||| || | ||| ||||||| ||| Sbjct 6971707 TCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCA 6971766 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312 || ||||| ||||| || || ||||| ||||| ||||| |||| || | ||| ||||| Sbjct 6971767 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATAT 6971826 Query 13313 GTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 ||| | ||| | | |||| |||||| | ||| || | || || || | Sbjct 6971827 GTAGCTTCTTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGC 6971886 Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCT 13432 || | || || || || || | | | | |||| || ||| ||| ||||| || Sbjct 6971887 ATCGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCA 6971946 Query 13433 ATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492 || | | ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| Sbjct 6971947 ATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 6972006 Query 13493 CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACT 13552 || |||||| | | ||||||||| | ||| | || | |||||||| || ||| Sbjct 6972007 CAAGGAGCCTCGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACT 6972066 Query 13553 ATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTT 13608 || || ||||| || ||||| ||||| || | || |||||| | | | || | Sbjct 6972067 ATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGC 6972126 Query 13609 TTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCA 13668 ||| | ||| ||| | ||| || || || | || ||||||||| | ||||| Sbjct 6972127 TTC--AGGGCTT--CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCA 6972182 Query 13669 AAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAA 13725 ||| ||||| |||| |||||||||||| ||| ||||| | || | || ||||| Sbjct 6972183 AAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 6972239 Score = 215 bits (238), Expect = 4e-51 Identities = 339/481 (70%), Gaps = 16/481 (3%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || |||| | ||||| |||| ||||| || ||||| ||||| || || | Sbjct 6968489 TTGACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 6968548 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT-----TCGAACAATAGTATTT 12957 | || | ||||||||||||||||| || || ||||||| | ||| | || Sbjct 6968549 CCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACC-----TT 6968603 Query 12958 TTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAA 13017 || | || | || || | | ||| || || || ||||| |||||||| ||||| || Sbjct 6968604 GCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAA 6968663 Query 13018 ATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTAT 13077 | || ||||| || || | || ||||||| || || || | || | | |||||| Sbjct 6968664 AGTGCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTAT 6968723 Query 13078 ATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-TG--ATAG 13134 |||||| | || | ||| || ||| ||| ||| | | ||| || || | || Sbjct 6968724 CCTAACTGCATTGACGATTATTTC-CTT--TACTCTCTGTTTCGAAGGTTTGTGCAACAG 6968780 Query 13135 ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTC 13194 || || ||||||| || | ||| ||||||||||| || |||||||| || || || || Sbjct 6968781 GTGTTTGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTC 6968840 Query 13195 GTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 || ||||| || || || ||||| || |||||||| || | ||| ||||||| ||||| Sbjct 6968841 ATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAA 6968900 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 ||||| ||||| || || ||||| ||||| ||||| |||| || | ||| ||||| || Sbjct 6968901 AGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGT 6968960 Query 13315 A 13315 | Sbjct 6968961 A 6968961 >seq608 Length=3558542 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || ||||| || ||||| || || || ||||| || |||| ||| | Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2088483 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 2088482 CCACCACCCTTTCCCC 2088467 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859 |||||||||| ||||| | || |||| ||| || || | || |||||| | | Sbjct 2099025 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTT-TCTGCCATAACTGCAAAA 2098967 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||||| ||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 2098966 CGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTT 2098907 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 ||||||||||| || ||||||| Sbjct 2098906 TCCATAAAATCAAAGGGATTTT 2098885 >seq7661 Length=1898141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||||||||| || || | | ||||||||||| ||||| || |||||||| || ||||| Sbjct 816923 AATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 816864 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| |||||| | | ||||||||| Sbjct 816863 GAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTC 816825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430903301126718