Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq5120 86.0 6e-12 >seq5120 Length=19846 Score = 86.0 bits (94), Expect = 6e-12 Identities = 334/508 (66%), Gaps = 29/508 (6%) Strand=Plus/Minus Query 99273 GCTCCAGTCGACGCCGCCGCGGCCGTGCTGCTCCAGGAACGCGTTGGCCT-CGGCAAAGT 99331 || |||||||| | ||||| || | |||||| || ||||||||| || ||| Sbjct 5589 GCGCCAGTCGATCGCTCCGCGCCCCTTGGCCTCCAGAAAGTCGTTGGCCTGCGAGAAATG 5530 Query 99332 GCGTGCAGGTGACGAAGGGCGCC---CGC-GACAGCGGCGAGGGGTGGCTGTGCGTCAGC 99387 ||| |||| | ||| | || ||| ||||||||||| || ||| | ||||| Sbjct 5529 GCG-GCAGCCCA-GAAAGCCGTTATGCGCAGACAGCGGCGAAGGATGGGCAGCCTTCAGC 5472 Query 99388 ACGAGGTGCCGCTTCCCGGCCGCCCCAAA---GGCC---CGCTGGGCGTGCGCGCCCCAG 99441 || || || || ||||| | | || |||| |||||||| | |||||||| Sbjct 5471 ACCAGATGGCG---CCCGGAATCGACGAAGCCGGCCTTGCGCTGGGCATAGGCGCCCCAC 5415 Query 99442 AGCATGAACACCATCGG-GCCGCC--CTGCGCGCTCAGGCGGGCCAGCACCGCGTGCACC 99498 |||| |||||| | ||| || || |||||| ||| ||| | | ||||| Sbjct 5414 AGCAGGAACACGACCGGCTCCTCCTTCTGCGCCACCAGCCGG---ACGATCGCGTCGGTG 5358 Query 99499 AGCCGCCCCCAGCCCAGGCTGGCGTGCGAGCCCGGCGC--CCCGCTCCGCACGGTGAGCG 99556 | | | |||||||| || |||||| | |||||| ||| | || || || ||| Sbjct 5357 AACGTCTCCCAGCCCTTGCCCTGGTGCGA-CGCGGCGCGGCCCATTTCG-ACCGTCAGCA 5300 Query 99557 AGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGCTGCGGCC 99616 | ||||||||| ||||||||| | |||||||| ||||||| ||||||| ||| | Sbjct 5299 CGCTGTTGAGCAACAGCACGCCCTGCCGCGCCCAATGCTCCAGGAAGCCGTG--GCGTGC 5242 Query 99617 GCGGGGTCCCGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGGGA 99676 ||| || | | || || | | || || |||||| || || |||||| Sbjct 5241 GCGCGG-CAGGCCGAGGTCGCTTTCCAGCTCCTTGTAGATATTGACCAGCGAGGGCGGCG 5183 Query 99677 TCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGG 99736 || | |||||| | | || ||| |||||| || ||||| || | || || |||| Sbjct 5182 TCCGCACGCCGGGCTGGACCGAAAAGCACAGGCCATGCGCCTGGCCCTCGCCATGATAGG 5123 Query 99737 GGTCCTGGCCCAGGATGACGACCTTGAC 99764 |||| || ||||| | || ||||| || Sbjct 5122 GGTCTTGCCCCAGCACCACCACCTTCAC 5095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440816206236840