Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_005261.2
Length=137821
Score E
Sequences producing significant alignments: (Bits) Value
seq5120 86.0 6e-12
>seq5120
Length=19846
Score = 86.0 bits (94), Expect = 6e-12
Identities = 334/508 (66%), Gaps = 29/508 (6%)
Strand=Plus/Minus
Query 99273 GCTCCAGTCGACGCCGCCGCGGCCGTGCTGCTCCAGGAACGCGTTGGCCT-CGGCAAAGT 99331
|| |||||||| | ||||| || | |||||| || ||||||||| || |||
Sbjct 5589 GCGCCAGTCGATCGCTCCGCGCCCCTTGGCCTCCAGAAAGTCGTTGGCCTGCGAGAAATG 5530
Query 99332 GCGTGCAGGTGACGAAGGGCGCC---CGC-GACAGCGGCGAGGGGTGGCTGTGCGTCAGC 99387
||| |||| | ||| | || ||| ||||||||||| || ||| | |||||
Sbjct 5529 GCG-GCAGCCCA-GAAAGCCGTTATGCGCAGACAGCGGCGAAGGATGGGCAGCCTTCAGC 5472
Query 99388 ACGAGGTGCCGCTTCCCGGCCGCCCCAAA---GGCC---CGCTGGGCGTGCGCGCCCCAG 99441
|| || || || ||||| | | || |||| |||||||| | ||||||||
Sbjct 5471 ACCAGATGGCG---CCCGGAATCGACGAAGCCGGCCTTGCGCTGGGCATAGGCGCCCCAC 5415
Query 99442 AGCATGAACACCATCGG-GCCGCC--CTGCGCGCTCAGGCGGGCCAGCACCGCGTGCACC 99498
|||| |||||| | ||| || || |||||| ||| ||| | | |||||
Sbjct 5414 AGCAGGAACACGACCGGCTCCTCCTTCTGCGCCACCAGCCGG---ACGATCGCGTCGGTG 5358
Query 99499 AGCCGCCCCCAGCCCAGGCTGGCGTGCGAGCCCGGCGC--CCCGCTCCGCACGGTGAGCG 99556
| | | |||||||| || |||||| | |||||| ||| | || || || |||
Sbjct 5357 AACGTCTCCCAGCCCTTGCCCTGGTGCGA-CGCGGCGCGGCCCATTTCG-ACCGTCAGCA 5300
Query 99557 AGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGCTGCGGCC 99616
| ||||||||| ||||||||| | |||||||| ||||||| ||||||| ||| |
Sbjct 5299 CGCTGTTGAGCAACAGCACGCCCTGCCGCGCCCAATGCTCCAGGAAGCCGTG--GCGTGC 5242
Query 99617 GCGGGGTCCCGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGGGA 99676
||| || | | || || | | || || |||||| || || ||||||
Sbjct 5241 GCGCGG-CAGGCCGAGGTCGCTTTCCAGCTCCTTGTAGATATTGACCAGCGAGGGCGGCG 5183
Query 99677 TCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGG 99736
|| | |||||| | | || ||| |||||| || ||||| || | || || ||||
Sbjct 5182 TCCGCACGCCGGGCTGGACCGAAAAGCACAGGCCATGCGCCTGGCCCTCGCCATGATAGG 5123
Query 99737 GGTCCTGGCCCAGGATGACGACCTTGAC 99764
|||| || ||||| | || ||||| ||
Sbjct 5122 GGTCTTGCCCCAGCACCACCACCTTCAC 5095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 440816206236840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |