Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_005284.1
Length=54865
Score E
Sequences producing significant alignments: (Bits) Value
seq11405 351 3e-92
>seq11405
Length=110570
Score = 351 bits (388), Expect = 3e-92
Identities = 546/768 (71%), Gaps = 48/768 (6%)
Strand=Plus/Plus
Query 30873 TCACCCCATTGCTTGAACAGGAACGGCACATCTGCGGCAGCGCACTGGTCGCGCAGCGAC 30932
|| ||||| |||||||||| ||| | | | |||| ||||||||||||||||
Sbjct 75267 TCGCCCCACTGCTTGAACATGAAGGCCGTGCCCACGGCCTCGCACTGGTCGCGCAGGCTG 75326
Query 30933 CGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCCGGCGATCACC 30992
| ||||||||||||||||| || || || ||| ||||||| ||||||||| ||||||||
Sbjct 75327 AGCGCCCAGTCGGGATGCATGGGACGCGCACCGGGGCCGCTCTCGCCGCCGACGATCACC 75386
Query 30993 CAATGTAGGCCGCCGTCGGCTGGTCGGCGTAGTTCGAACTGGCGCTTGCCGCCGTGCGTG 31052
|| | || | | | | | | |||| ||||| | ||
Sbjct 75387 CAGTCCAGTTCCTC----------CAGAGCA-TTCG----------TGCCGTC-----TG 75420
Query 31053 CGGAAGTTGCCGGTTGGCTCGCTGTAGATG--TGGAAGCGCAGGTCAACCGACCCAAGCA 31110
|| | ||||| || || | || | | | | | || || || | ||| ||||
Sbjct 75421 CG-ATGTTGCTGG--GGTTGGC-GAACAAGCCTTCAAACGAC-----ACAGGCCCCAGCA 75471
Query 31111 GCGGCTCCATCGACAGGAAGCGTACGCGCGCGGGTACTGC-GAGCAGCTTCGGGATGTCG 31169
| ||||||||||||| |||||| ||| |||||| | ||| ||||||||| | |||||
Sbjct 75472 GGGGCTCCATCGACAAGAAGCGCACGGACGCGGGGA-TGCGGAGCAGCTTGAGAATGTCC 75530
Query 31170 CGGTCGGCCTCTTCCTGGTTGACGATCGTCGCGCCGATCCAGACGTTATCCGGCAGTCGG 31229
||||||||||| |||||||||| | |||||| || | ||||||||| | ||| | | |
Sbjct 75531 CGGTCGGCCTCGGCCTGGTTGACAACCGTCGCACCCAACCAGACGTTCGCGGGCGGGCCG 75590
Query 31230 TCGATTCCGATCTCGCGTAGCATCGCCGCGACGTTGCCGATGCGCTTCGTCAGCAACAAC 31289
|||| || |||| |||||| || | |||| || || | || || || | | |
Sbjct 75591 TCGAGGAACATTTCGCCTAGCATGGCACCCGCGTTCCCAATCCTTTTGGTGAGGAGGAGC 75650
Query 31290 CAGTCGAGGTTTGGCGTGTCGGCGATCAGGCGGAACAGGTCCGCGCGCCACGC-CGGATC 31348
||||| |||| | ||||| ||||||| |||||| ||||||| | ||| |
Sbjct 75651 CAGTCAAGGTCCGCGGTGTCCAGGATCAGGGCTGCCAGGTCATCGCGCCATTCACGGCT- 75709
Query 31349 GACAGTGTTGTCGAAAACGTCGGCGAGCGACGCGCAGAACACGCGCTGTCGGTGGCCGTG 31408
||| | ||| ||||||||||| ||||| |||||||||||||||||| ||| |||||||
Sbjct 75710 GACTGCGTTATCGAAAACGTCAGCGAGGCTCGCGCAGAACACGCGCTGGCGGCGGCCGTG 75769
Query 31409 GATTGCATAGAA---CGCGCCGTCGCGGTTCCACTTCATGGGCTTGCGCCAGTTCGCGGG 31465
|| | ||| | || | | | |||||| || |||| | |||||| || |
Sbjct 75770 CTGGGCCTGGAATGCCTCGGCCTGGGCGTTCCAGCGCAGGGGCAGGTTCCAGTT-GCTGA 75828
Query 31466 CGAC--GTGCGCCGCTGCGGCGCGCCGGGCCCCCAATTGACCGCCGTGCCGCCGGAAAAG 31523
| || ||||| || | || ||||| || ||||| |||| |||| |||||||| |||
Sbjct 75829 C-ACTGGTGCGGCGGCGGGGTGCGCCTGGGCCCCAGTTGATCGCCTGGCCGCCGGCGAAG 75887
Query 31524 CGCGCATTGCGCGCCTCGGCATAACAGTGGTCGCATCCCGGACCGACCTTCTGGCAACCT 31583
|| |||||||| ||||||||| |||||||| || ||||| || ||||||||||| |||
Sbjct 75888 CGGGCATTGCGGTTCTCGGCATAGCAGTGGTCACAGCCCGGGCCCACCTTCTGGCAGCCT 75947
Query 31584 TCCCACGGGTTGAACGTGTGGTCGCACCATTCGATTTTGCTGTTCTCG 31631
||||| |||||||||||||||||| ||||||||| ||||||||||||
Sbjct 75948 TCCCAGGGGTTGAACGTGTGGTCGGTCCATTCGATCTTGCTGTTCTCG 75995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 175415025687866
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |