Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq11405 351 3e-92 >seq11405 Length=110570 Score = 351 bits (388), Expect = 3e-92 Identities = 546/768 (71%), Gaps = 48/768 (6%) Strand=Plus/Plus Query 30873 TCACCCCATTGCTTGAACAGGAACGGCACATCTGCGGCAGCGCACTGGTCGCGCAGCGAC 30932 || ||||| |||||||||| ||| | | | |||| |||||||||||||||| Sbjct 75267 TCGCCCCACTGCTTGAACATGAAGGCCGTGCCCACGGCCTCGCACTGGTCGCGCAGGCTG 75326 Query 30933 CGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCCGGCGATCACC 30992 | ||||||||||||||||| || || || ||| ||||||| ||||||||| |||||||| Sbjct 75327 AGCGCCCAGTCGGGATGCATGGGACGCGCACCGGGGCCGCTCTCGCCGCCGACGATCACC 75386 Query 30993 CAATGTAGGCCGCCGTCGGCTGGTCGGCGTAGTTCGAACTGGCGCTTGCCGCCGTGCGTG 31052 || | || | | | | | | |||| ||||| | || Sbjct 75387 CAGTCCAGTTCCTC----------CAGAGCA-TTCG----------TGCCGTC-----TG 75420 Query 31053 CGGAAGTTGCCGGTTGGCTCGCTGTAGATG--TGGAAGCGCAGGTCAACCGACCCAAGCA 31110 || | ||||| || || | || | | | | | || || || | ||| |||| Sbjct 75421 CG-ATGTTGCTGG--GGTTGGC-GAACAAGCCTTCAAACGAC-----ACAGGCCCCAGCA 75471 Query 31111 GCGGCTCCATCGACAGGAAGCGTACGCGCGCGGGTACTGC-GAGCAGCTTCGGGATGTCG 31169 | ||||||||||||| |||||| ||| |||||| | ||| ||||||||| | ||||| Sbjct 75472 GGGGCTCCATCGACAAGAAGCGCACGGACGCGGGGA-TGCGGAGCAGCTTGAGAATGTCC 75530 Query 31170 CGGTCGGCCTCTTCCTGGTTGACGATCGTCGCGCCGATCCAGACGTTATCCGGCAGTCGG 31229 ||||||||||| |||||||||| | |||||| || | ||||||||| | ||| | | | Sbjct 75531 CGGTCGGCCTCGGCCTGGTTGACAACCGTCGCACCCAACCAGACGTTCGCGGGCGGGCCG 75590 Query 31230 TCGATTCCGATCTCGCGTAGCATCGCCGCGACGTTGCCGATGCGCTTCGTCAGCAACAAC 31289 |||| || |||| |||||| || | |||| || || | || || || | | | Sbjct 75591 TCGAGGAACATTTCGCCTAGCATGGCACCCGCGTTCCCAATCCTTTTGGTGAGGAGGAGC 75650 Query 31290 CAGTCGAGGTTTGGCGTGTCGGCGATCAGGCGGAACAGGTCCGCGCGCCACGC-CGGATC 31348 ||||| |||| | ||||| ||||||| |||||| ||||||| | ||| | Sbjct 75651 CAGTCAAGGTCCGCGGTGTCCAGGATCAGGGCTGCCAGGTCATCGCGCCATTCACGGCT- 75709 Query 31349 GACAGTGTTGTCGAAAACGTCGGCGAGCGACGCGCAGAACACGCGCTGTCGGTGGCCGTG 31408 ||| | ||| ||||||||||| ||||| |||||||||||||||||| ||| ||||||| Sbjct 75710 GACTGCGTTATCGAAAACGTCAGCGAGGCTCGCGCAGAACACGCGCTGGCGGCGGCCGTG 75769 Query 31409 GATTGCATAGAA---CGCGCCGTCGCGGTTCCACTTCATGGGCTTGCGCCAGTTCGCGGG 31465 || | ||| | || | | | |||||| || |||| | |||||| || | Sbjct 75770 CTGGGCCTGGAATGCCTCGGCCTGGGCGTTCCAGCGCAGGGGCAGGTTCCAGTT-GCTGA 75828 Query 31466 CGAC--GTGCGCCGCTGCGGCGCGCCGGGCCCCCAATTGACCGCCGTGCCGCCGGAAAAG 31523 | || ||||| || | || ||||| || ||||| |||| |||| |||||||| ||| Sbjct 75829 C-ACTGGTGCGGCGGCGGGGTGCGCCTGGGCCCCAGTTGATCGCCTGGCCGCCGGCGAAG 75887 Query 31524 CGCGCATTGCGCGCCTCGGCATAACAGTGGTCGCATCCCGGACCGACCTTCTGGCAACCT 31583 || |||||||| ||||||||| |||||||| || ||||| || ||||||||||| ||| Sbjct 75888 CGGGCATTGCGGTTCTCGGCATAGCAGTGGTCACAGCCCGGGCCCACCTTCTGGCAGCCT 75947 Query 31584 TCCCACGGGTTGAACGTGTGGTCGCACCATTCGATTTTGCTGTTCTCG 31631 ||||| |||||||||||||||||| ||||||||| |||||||||||| Sbjct 75948 TCCCAGGGGTTGAACGTGTGGTCGGTCCATTCGATCTTGCTGTTCTCG 75995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175415025687866