Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq7355 114 1e-20 >seq7355 Length=5246521 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| || ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 5156479 GGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGATGCCACAGGCT 5156538 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || || || || ||||| || || ||||| || || ||||| || ||||||||||| Sbjct 5156539 GAGAACCATGGGCCTGACATCAAGGAGCACGTGAACTCGCTGGGGGAGAAGCTGAAGACC 5156598 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | | || || ||||| ||||| Sbjct 5156599 CTCCGGCTGCGGCTGCGGCGCTG 5156621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429975471444008