Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_005340.1
Length=30636
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 246 6e-61
>seq7272
Length=98981
Score = 246 bits (272), Expect = 6e-61
Identities = 635/959 (66%), Gaps = 15/959 (2%)
Strand=Plus/Minus
Query 2297 CCGAGGCCTGTTGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGG 2356
|| || ||||| | ||||||| ||||| | | |||||||||||||| || | | ||||
Sbjct 42044 CCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTTGTATTTCTCTGTCATCTGGCGG 41985
Query 2357 ATGCCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGA 2416
||| |||| |||||||| |||||||| || || |||| ||||||||||||||
Sbjct 41984 ATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAACTGCATGCGCTCCAGCATGCGG 41925
Query 2417 AACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTG 2476
|||||||| |||| | ||||| || || || ||| || || |||||| ||
Sbjct 41924 AACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACAAGGCCCGCCGAGTCGCCCGTA 41865
Query 2477 TGGGACGGGTCGTAGCCAATCCAGACCGGGCGTGAGCCGAATGGATGGTCGGCGAACGGG 2536
||| ||||| |||||||||||||| || | ||| || || | | ||| ||
Sbjct 41864 TGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGGCCAAACGGCCGCAACGTGAAGGGC 41805
Query 2537 GCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGG 2596
||| || ||| | ||| ||| | ||||||| |||| | ||||
Sbjct 41804 TTGAAATCGCTCCACGCATCCCAGCTGTCCGCATGGCAGCGCATCAGCGTGGACAGCGGG 41745
Query 2597 AATACAGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCA 2656
|| |||| | || ||||||||| ||||||| | |||||| | | ||||| ||
Sbjct 41744 AAAACAGCGAAGGTGTCATCGACAAACCCGCACATGAGCAGGTTGTCCCATTCCTCGTCC 41685
Query 2657 CTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCC 2716
| ||| | || | ||| ||||||||||| ||||||| ||| | || |||
Sbjct 41684 GAATACTCGAAGCGCAGTTCGTCAAGGTCGAACAGATTGCAGCCGCCGCGCTGCGCATCC 41625
Query 2717 TCAATAGTGACAATCTGCCGCCACTGTCC-GTCAGCGCAAA-GAAGCCCACCGGCGAGCG 2774
| ||||||||||||||||| | || ||| ||| |||||| | | | | |
Sbjct 41624 AGCACCGTGACAATCTGCCGCCA-TATCTTGTCCTCGCCGGTGAAGCCTCCAGCCAGGTG 41566
Query 2775 CGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGGCGCGCCCCTTGTTGAACA 2834
|| || || | ||| | || |||||||| |||||||| ||||||||
Sbjct 41565 CGAA-TGGCTCAGGTCCAGCTCTATGCGGTCCTTTT---TGGCGCGCTTCTTGTTGATGC 41510
Query 2835 GCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAG 2894
| ||| | ||| | | ||| || |||| ||| || || || ||||| |
Sbjct 41509 GTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTGCAGGCTGCTGGGCGTGGAAAACAGCG 41450
Query 2895 TTGAGCGCAGATGCTTTTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCTGAAAAT 2954
| |||| |||||| || |||||| || ||| || || | ||||| | || |
Sbjct 41449 TCTTGCGCCAATGCTTGTGGATGGCCATACCGCTGGCCACCTTCCACAGCTCCGTGAAGT 41390
Query 2955 TCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGG 3014
| || ||| || | |||||||| ||| || | ||||| | |||||||||| ||
Sbjct 41389 TGTTGACCCAAAAGAATTCATCGAAATAGAGATTGCCGTGGTACGACTGCGCGGTGCGGG 41330
Query 3015 AATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCAG 3074
| ||||| || ||| |||| | ||||| ||| | | ||| || ||||||||
Sbjct 41329 CGCTCGTGCCCAGGAAATACAGCGTGGCGCCATTGCTC---AGGACGATGGGGTCGCCCT 41273
Query 3075 TCAGGTCGACGTCAACCAGTCGC----GCAAACTGGATGATGTATTCCCGGAACACGTAA 3130
||| |||| || | | | | |||||| ||||||||| | |||||| || |
Sbjct 41272 TCAAATCGATATCG-CAATGCTCCTTGGCAAACGCGATGATGTACTGCCGGAAAACATGG 41214
Query 3131 GCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGC 3190
||||||| |||||||| ||||||||||| || |||| ||||| || || | |
Sbjct 41213 GCCTGCGCACGGCTGGCCGAAAGAAAAATCTGATTGCGGCCCGTCTTCAGGGCATCAATC 41154
Query 3191 AGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCG 3249
|| ||||||||| ||||| |||| || || |||||||| ||||||||||| ||||
Sbjct 41153 AGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGATCTGGCGCGATTTGAGAATGGCGCG 41095
Score = 113 bits (124), Expect = 9e-21
Identities = 264/393 (67%), Gaps = 14/393 (4%)
Strand=Plus/Minus
Query 362 CGCCCATAAGCTGGAACGGCACGCGGTGAGCGTCCATCAGGTCGGCGGCACTGGCTTTCT 421
||||||| ||||| ||||||||||| ||| ||| |||| || || | ||||
Sbjct 43233 CGCCCATGAGCTGCGGAGGCACGCGGTGGGCGGCCAATTGGTCATCGCGGCTCACGTTCT 43174
Query 422 TGATATTGAAAAAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTTATGCCGT 481
|||| |||||||| |||||||| | || |||||| | |||| | || ||| | |
Sbjct 43173 TGATGTTGAAAAATTCATCCTTGGCCGCCGCCTCGCCGATGGGCAGCAGTTGGATGGCTT 43114
Query 482 CCGGTTTCCCGTTCGGTGAGTAGAAAAACAGGTTTTTAAAGTTGCCGA-GCCCTT--TAG 538
| ||| ||| || || | ||||||||| || || ||||| | |||||| ||
Sbjct 43113 TCTCTTTGCCGCCGGGCGAATGGAAAAACAGATTGCGGAAATTGCCCATGCCCTTGGAAG 43054
Query 539 AATTACGCATTGCATCGCGCAGCGATTCGACGTCAGTCGCGCTTTGC----GCCGGGTCA 594
| || || || | |||||||| || || || ||| ||||| | || ||
Sbjct 43053 ATTT---CAAGGCCTGGCGCAGCGCATCCACATC-GTC---TTTTGCCACTTCGGGATCG 43001
Query 595 GTCACATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGC 654
||| ||| | |||||| || || || || || | ||||||| ||| || ||||||
Sbjct 43000 CTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCCGAAACAGC 42941
Query 655 GTCGCGGATTCATTCAGCCACGCAGAATTAAGCGCGCTGAGATATTCAGGCAGGCCGTAA 714
|| || || ||||| ||||| || || | |||||| || || | ||||| || ||
Sbjct 42940 GTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCAGTCCATAG 42881
Query 715 ATCTCCTGATTAATATCAGGCTCCAGCAGGTGG 747
|| ||||| | | ||| |||| || | ||||
Sbjct 42880 ATTTCCTGGTGCACATCGGGCTGGAGGATGTGG 42848
Score = 111 bits (122), Expect = 3e-20
Identities = 258/387 (67%), Gaps = 4/387 (1%)
Strand=Plus/Minus
Query 15653 ACCTGCTCAACGAGGCCGGGGTTACAACGCTGGTACGCAAGGACGGTTTCCGCTTCTGGG 15712
|||||||||| |||| | || || ||||| | | | | || | ||||||||||
Sbjct 25182 ACCTGCTCAATGAGGGCAACGTCACCACGCTCATCAACTACCAGGGCTATCGCTTCTGGG 25123
Query 15713 GTAACCGCACCTGCTCGGATGACCCGCTTTTTCTGTTTGAGAACTACACTCGCACCGCGC 15772
| ||||||||| ||| || || | || ||| | | ||||| || |
Sbjct 25122 GATCGCGCACCTGCAGCACCGACGAACTGTTCCGATTCGAGTCCAGCGTGCGCACTGCCC 25063
Query 15773 AGGTACTGGCCGACACGATGGCCGAGGCGCACATGTGGGC--GGTCGACAAGCCCATTAC 15830
|||| ||||||||||| ||||| ||| | ||| | | | ||||||||||||||
Sbjct 25062 AGGTGCTGGCCGACACCATGGCAGAG--GGTCATTTCGCCTTTGTCGACAAGCCCATGCA 25005
Query 15831 CGCCACGCTCATTCGTGACATTGTTGACGGCATTAACGCCAAATTCCGCGAGCTGAAATC 15890
| ||| | | ||||| || || ||||| || ||||| |||||||| || || |
Sbjct 25004 CCCCAGCATGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGTTCCGCGAACTCAAGGC 24945
Query 15891 AAACGGCTACATCGTGGAGGGTAAATGCTGGTTCGATGAGGAATCGAACGACAAGGAAAC 15950
||||||||| | || || |||||| || | || ||| || ||| |
Sbjct 24944 CCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGGTCAACACCACAGAAGC 24885
Query 15951 CCTCAAGGCCGGGAAACTGTATATCGACTACGACTATACACCGGTTCCGCCACTGGAAAG 16010
||||||||||| || ||| | ||||||||||| || || || ||||| ||||||
Sbjct 24884 GCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCGTGCCGCCGCTGGAAGA 24825
Query 16011 CCTGACCCTGCGCCAGCGTATCACCGA 16037
|||| | |||||||| ||||||||
Sbjct 24824 CCTGGGATTCCGCCAGCGCATCACCGA 24798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97896090539284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |