Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq7272 246 6e-61 >seq7272 Length=98981 Score = 246 bits (272), Expect = 6e-61 Identities = 635/959 (66%), Gaps = 15/959 (2%) Strand=Plus/Minus Query 2297 CCGAGGCCTGTTGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGG 2356 || || ||||| | ||||||| ||||| | | |||||||||||||| || | | |||| Sbjct 42044 CCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTTGTATTTCTCTGTCATCTGGCGG 41985 Query 2357 ATGCCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGA 2416 ||| |||| |||||||| |||||||| || || |||| |||||||||||||| Sbjct 41984 ATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAACTGCATGCGCTCCAGCATGCGG 41925 Query 2417 AACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTG 2476 |||||||| |||| | ||||| || || || ||| || || |||||| || Sbjct 41924 AACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACAAGGCCCGCCGAGTCGCCCGTA 41865 Query 2477 TGGGACGGGTCGTAGCCAATCCAGACCGGGCGTGAGCCGAATGGATGGTCGGCGAACGGG 2536 ||| ||||| |||||||||||||| || | ||| || || | | ||| || Sbjct 41864 TGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGGCCAAACGGCCGCAACGTGAAGGGC 41805 Query 2537 GCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGG 2596 ||| || ||| | ||| ||| | ||||||| |||| | |||| Sbjct 41804 TTGAAATCGCTCCACGCATCCCAGCTGTCCGCATGGCAGCGCATCAGCGTGGACAGCGGG 41745 Query 2597 AATACAGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCA 2656 || |||| | || ||||||||| ||||||| | |||||| | | ||||| || Sbjct 41744 AAAACAGCGAAGGTGTCATCGACAAACCCGCACATGAGCAGGTTGTCCCATTCCTCGTCC 41685 Query 2657 CTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCC 2716 | ||| | || | ||| ||||||||||| ||||||| ||| | || ||| Sbjct 41684 GAATACTCGAAGCGCAGTTCGTCAAGGTCGAACAGATTGCAGCCGCCGCGCTGCGCATCC 41625 Query 2717 TCAATAGTGACAATCTGCCGCCACTGTCC-GTCAGCGCAAA-GAAGCCCACCGGCGAGCG 2774 | ||||||||||||||||| | || ||| ||| |||||| | | | | | Sbjct 41624 AGCACCGTGACAATCTGCCGCCA-TATCTTGTCCTCGCCGGTGAAGCCTCCAGCCAGGTG 41566 Query 2775 CGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGGCGCGCCCCTTGTTGAACA 2834 || || || | ||| | || |||||||| |||||||| |||||||| Sbjct 41565 CGAA-TGGCTCAGGTCCAGCTCTATGCGGTCCTTTT---TGGCGCGCTTCTTGTTGATGC 41510 Query 2835 GCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAG 2894 | ||| | ||| | | ||| || |||| ||| || || || ||||| | Sbjct 41509 GTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTGCAGGCTGCTGGGCGTGGAAAACAGCG 41450 Query 2895 TTGAGCGCAGATGCTTTTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCTGAAAAT 2954 | |||| |||||| || |||||| || ||| || || | ||||| | || | Sbjct 41449 TCTTGCGCCAATGCTTGTGGATGGCCATACCGCTGGCCACCTTCCACAGCTCCGTGAAGT 41390 Query 2955 TCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGG 3014 | || ||| || | |||||||| ||| || | ||||| | |||||||||| || Sbjct 41389 TGTTGACCCAAAAGAATTCATCGAAATAGAGATTGCCGTGGTACGACTGCGCGGTGCGGG 41330 Query 3015 AATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCAG 3074 | ||||| || ||| |||| | ||||| ||| | | ||| || |||||||| Sbjct 41329 CGCTCGTGCCCAGGAAATACAGCGTGGCGCCATTGCTC---AGGACGATGGGGTCGCCCT 41273 Query 3075 TCAGGTCGACGTCAACCAGTCGC----GCAAACTGGATGATGTATTCCCGGAACACGTAA 3130 ||| |||| || | | | | |||||| ||||||||| | |||||| || | Sbjct 41272 TCAAATCGATATCG-CAATGCTCCTTGGCAAACGCGATGATGTACTGCCGGAAAACATGG 41214 Query 3131 GCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGC 3190 ||||||| |||||||| ||||||||||| || |||| ||||| || || | | Sbjct 41213 GCCTGCGCACGGCTGGCCGAAAGAAAAATCTGATTGCGGCCCGTCTTCAGGGCATCAATC 41154 Query 3191 AGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCG 3249 || ||||||||| ||||| |||| || || |||||||| ||||||||||| |||| Sbjct 41153 AGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGATCTGGCGCGATTTGAGAATGGCGCG 41095 Score = 113 bits (124), Expect = 9e-21 Identities = 264/393 (67%), Gaps = 14/393 (4%) Strand=Plus/Minus Query 362 CGCCCATAAGCTGGAACGGCACGCGGTGAGCGTCCATCAGGTCGGCGGCACTGGCTTTCT 421 ||||||| ||||| ||||||||||| ||| ||| |||| || || | |||| Sbjct 43233 CGCCCATGAGCTGCGGAGGCACGCGGTGGGCGGCCAATTGGTCATCGCGGCTCACGTTCT 43174 Query 422 TGATATTGAAAAAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTTATGCCGT 481 |||| |||||||| |||||||| | || |||||| | |||| | || ||| | | Sbjct 43173 TGATGTTGAAAAATTCATCCTTGGCCGCCGCCTCGCCGATGGGCAGCAGTTGGATGGCTT 43114 Query 482 CCGGTTTCCCGTTCGGTGAGTAGAAAAACAGGTTTTTAAAGTTGCCGA-GCCCTT--TAG 538 | ||| ||| || || | ||||||||| || || ||||| | |||||| || Sbjct 43113 TCTCTTTGCCGCCGGGCGAATGGAAAAACAGATTGCGGAAATTGCCCATGCCCTTGGAAG 43054 Query 539 AATTACGCATTGCATCGCGCAGCGATTCGACGTCAGTCGCGCTTTGC----GCCGGGTCA 594 | || || || | |||||||| || || || ||| ||||| | || || Sbjct 43053 ATTT---CAAGGCCTGGCGCAGCGCATCCACATC-GTC---TTTTGCCACTTCGGGATCG 43001 Query 595 GTCACATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGC 654 ||| ||| | |||||| || || || || || | ||||||| ||| || |||||| Sbjct 43000 CTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCCGAAACAGC 42941 Query 655 GTCGCGGATTCATTCAGCCACGCAGAATTAAGCGCGCTGAGATATTCAGGCAGGCCGTAA 714 || || || ||||| ||||| || || | |||||| || || | ||||| || || Sbjct 42940 GTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCAGTCCATAG 42881 Query 715 ATCTCCTGATTAATATCAGGCTCCAGCAGGTGG 747 || ||||| | | ||| |||| || | |||| Sbjct 42880 ATTTCCTGGTGCACATCGGGCTGGAGGATGTGG 42848 Score = 111 bits (122), Expect = 3e-20 Identities = 258/387 (67%), Gaps = 4/387 (1%) Strand=Plus/Minus Query 15653 ACCTGCTCAACGAGGCCGGGGTTACAACGCTGGTACGCAAGGACGGTTTCCGCTTCTGGG 15712 |||||||||| |||| | || || ||||| | | | | || | |||||||||| Sbjct 25182 ACCTGCTCAATGAGGGCAACGTCACCACGCTCATCAACTACCAGGGCTATCGCTTCTGGG 25123 Query 15713 GTAACCGCACCTGCTCGGATGACCCGCTTTTTCTGTTTGAGAACTACACTCGCACCGCGC 15772 | ||||||||| ||| || || | || ||| | | ||||| || | Sbjct 25122 GATCGCGCACCTGCAGCACCGACGAACTGTTCCGATTCGAGTCCAGCGTGCGCACTGCCC 25063 Query 15773 AGGTACTGGCCGACACGATGGCCGAGGCGCACATGTGGGC--GGTCGACAAGCCCATTAC 15830 |||| ||||||||||| ||||| ||| | ||| | | | |||||||||||||| Sbjct 25062 AGGTGCTGGCCGACACCATGGCAGAG--GGTCATTTCGCCTTTGTCGACAAGCCCATGCA 25005 Query 15831 CGCCACGCTCATTCGTGACATTGTTGACGGCATTAACGCCAAATTCCGCGAGCTGAAATC 15890 | ||| | | ||||| || || ||||| || ||||| |||||||| || || | Sbjct 25004 CCCCAGCATGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGTTCCGCGAACTCAAGGC 24945 Query 15891 AAACGGCTACATCGTGGAGGGTAAATGCTGGTTCGATGAGGAATCGAACGACAAGGAAAC 15950 ||||||||| | || || |||||| || | || ||| || ||| | Sbjct 24944 CCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGGTCAACACCACAGAAGC 24885 Query 15951 CCTCAAGGCCGGGAAACTGTATATCGACTACGACTATACACCGGTTCCGCCACTGGAAAG 16010 ||||||||||| || ||| | ||||||||||| || || || ||||| |||||| Sbjct 24884 GCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCGTGCCGCCGCTGGAAGA 24825 Query 16011 CCTGACCCTGCGCCAGCGTATCACCGA 16037 |||| | |||||||| |||||||| Sbjct 24824 CCTGGGATTCCGCCAGCGCATCACCGA 24798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97896090539284