Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq7041 93.3 1e-14 >seq7041 Length=191181 Score = 93.3 bits (102), Expect = 1e-14 Identities = 121/165 (73%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 38309 CCATTGAAGTTGC-TCACTTTCTGCGTACTGGTGCTGAAGAATGGCTTCACCGTCACCGG 38367 ||||||| |||| | || ||||||| || || ||| |||| || ||||| || || || Sbjct 27065 CCATTGA--TTGCCTGACGGTCTGCGTTCTCGTCCTGCAGAACGGTTTCACGGTGACTGG 27008 Query 38368 AGAGAGTGCCTGTGCAAGCCCGGAAAACTTTGATGCAGAAATTGGCCGGAAGATTGCCCG 38427 ||||| ||||| || |||||||||||||| ||||| || || || | || ||||| Sbjct 27007 CGAGAGCGCCTGCGCCAGCCCGGAAAACTTCGATGCCAGGATCGGGCGCGATATCGCCCG 26948 Query 38428 GCAAAATGCTGTAAACAAAATCTGGATGCTCGAAGGTTACTTGCT 38472 |||||| ||||| |||||| ||| || || ||| |||| Sbjct 26947 CGCGAATGCTCGCAACAAGATCTGGCAGCTTGAGGGATACCTGCT 26903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124793679700790