Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_005357.1
Length=42493
Score E
Sequences producing significant alignments: (Bits) Value
seq11405 140 9e-29
seq9683 102 2e-17
>seq11405
Length=110570
Score = 140 bits (154), Expect = 9e-29
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 42201 CTACTGGACGCCGTGCCTCAAGCGCCTGGGGATTCGCTACCGCCGGCCCTACAACATGCG 42260
||||||| |||| |||||||||||||| || | || || | |||||| | | ||
Sbjct 69831 CTACTGGCGGCCGATGCTCAAGCGCCTGGGCATCAGGTATCGAAGCCCCTACCAGACCCG 69772
Query 42261 GCATACCTACGCCACCATGATGCTGATGGCGGGGATGACGCCGGCATTCTGCGCGCGGCA 42320
||| |||||||| || ||| |||||||||| ||| | |||||||| | | ||| |||
Sbjct 69771 GCACACCTACGCGACGATGCTGCTGATGGCTGGGGTCACGCCGGCCTACGCCGCCAAGCA 69712
Query 42321 GCTTGGGCACTCGATTGAAATGTTTCTGCGCACCTACGCGAAGTGGTTGGACGGCGCGCA 42380
| | |||||| | || || ||||| |||||||| || ||||||||| | ||||||| ||
Sbjct 69711 GATGGGGCACACCATCGAGATGTTCCTGCGCACATATGCGAAGTGGATCGACGGCGGCCA 69652
Query 42381 GAACGATCTGGAAATGG 42397
|||| |||||||||
Sbjct 69651 CAACGCCTTGGAAATGG 69635
>seq9683
Length=137075
Score = 102 bits (112), Expect = 2e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 25429 GTTGTAGCCGTCCGTGCCGCCCATGATTTCCGTCATGCGCTGCACGAAGCCCTCGGTCTG 25488
||||||||| || | ||| | ||| | || ||| ||| || | | ||||| |||
Sbjct 28644 GTTGTAGCCATCGCGGGAGCCAAGGATCTTCGCCATCCGCAGCTCCAGGCCCTTCAACTG 28585
Query 25489 TGCTTTCTCGCGCCTCACGATGAGGGCGCGCTCGTGCTTGGTCAGGGTCAGGCCCGCGAT 25548
| || ||||| | ||||| | | |||| ||| |||||||| || ||| |
Sbjct 28584 CACGCCCTGGCGCCGGAAGATGATGCTGTGCTCCTGCGCGGTCAGGGCGAGCCCCAGCAG 28525
Query 25549 GAGGTCGGTTTTGCCGCCGCCGGCAGCGCCCCCGTAGCCGATGATGTCGGCGTCGGAGTT 25608
|| || || || ||||||||||| ||||| |||||| || ||||||||| ||||
Sbjct 28524 CAGCTCAGTCTTACCGCCGCCGGCCGCGCCGCCGTAGAAGAGGATGTCGGCCAGCGAGTA 28465
Query 25609 GTACGCCGCGGTCTGCGGCCCAGGCAGTGGCAACCA 25644
||| ||| |||||||||||||||| | |||| |||
Sbjct 28464 GTAAGCCATGGTCTGCGGCCCAGGCTGAGGCACCCA 28429
Score = 80.6 bits (88), Expect = 7e-11
Identities = 216/318 (68%), Gaps = 18/318 (6%)
Strand=Plus/Minus
Query 24655 GTCGAACCACATGGCGTGCCGGCGGGCCAG--GATGGTGTTGTCGCGCCCGCCGCGGGCC 24712
||||||||| | |||| || || || || || | | ||||| | ||||||||||||
Sbjct 29341 GTCGAACCAGCGGTCGTGGCGCCGCGC-AGCAGAAGAT-TTGTCCTGGCCGCCGCGGGCC 29284
Query 24713 ACGTCCACGCCCA-GGCTGTCCATCGGTGCCAGTCGG-TCGGGCCGCTTCCACCGCGCCT 24770
|| | |||| ||| ||| ||||| || || || ||| |||||| ||||||
Sbjct 29283 GGATCAAACCCCATGGCCGTC-ATCGGA-CCTTTCTTCTCCGGCTCCTTCCAGCGCGCCA 29226
Query 24771 GCGCGGCCTCGACCCATGCTGTCGGAATGACCTGCCAC---GGGTCGTCCTCGATGCCCG 24827
|| | || ||| | ||||| || | ||||||| |||||| || || || |
Sbjct 29225 TTGCCAATTTGATCCACTCCGTCGGGATAAGCTGCCACACCGGGTCGGCCGCG---CCGG 29169
Query 24828 CGTTGAAGTCGCCGTACAGCATCTGGCTGCGCAATGGCTCGGGCAACGATTGCAGGGTGA 24887
|| ||||||||||| ||||||||| |||| |||||||||||| | ||||| |
Sbjct 29168 CGCTGAAGTCGCCGCGGAGCATCTGGGAACGCAGTGGCTCGGGCAAGGCCTGCAGCTGGG 29109
Query 24888 CGAGATACCCGCTATCGACGTA--GTACGGGTTATCGGTCACGCGCGCCGGAATGAACGT 24945
| || ||| ||| | || | || |||| || |||||| | || ||||| ||
Sbjct 29108 CCTTGTAACCG--GTCGCCATAAGGAACAGGTTGTCATCCACGCGGGATGGGATGAAGGT 29051
Query 24946 GCGCGACTTGGGCTGGAT 24963
||| ||||||||| ||
Sbjct 29050 GCGGCTCTTGGGCTGCAT 29033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 135831705465890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |