Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq11405 140 9e-29 seq9683 102 2e-17 >seq11405 Length=110570 Score = 140 bits (154), Expect = 9e-29 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42201 CTACTGGACGCCGTGCCTCAAGCGCCTGGGGATTCGCTACCGCCGGCCCTACAACATGCG 42260 ||||||| |||| |||||||||||||| || | || || | |||||| | | || Sbjct 69831 CTACTGGCGGCCGATGCTCAAGCGCCTGGGCATCAGGTATCGAAGCCCCTACCAGACCCG 69772 Query 42261 GCATACCTACGCCACCATGATGCTGATGGCGGGGATGACGCCGGCATTCTGCGCGCGGCA 42320 ||| |||||||| || ||| |||||||||| ||| | |||||||| | | ||| ||| Sbjct 69771 GCACACCTACGCGACGATGCTGCTGATGGCTGGGGTCACGCCGGCCTACGCCGCCAAGCA 69712 Query 42321 GCTTGGGCACTCGATTGAAATGTTTCTGCGCACCTACGCGAAGTGGTTGGACGGCGCGCA 42380 | | |||||| | || || ||||| |||||||| || ||||||||| | ||||||| || Sbjct 69711 GATGGGGCACACCATCGAGATGTTCCTGCGCACATATGCGAAGTGGATCGACGGCGGCCA 69652 Query 42381 GAACGATCTGGAAATGG 42397 |||| ||||||||| Sbjct 69651 CAACGCCTTGGAAATGG 69635 >seq9683 Length=137075 Score = 102 bits (112), Expect = 2e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25429 GTTGTAGCCGTCCGTGCCGCCCATGATTTCCGTCATGCGCTGCACGAAGCCCTCGGTCTG 25488 ||||||||| || | ||| | ||| | || ||| ||| || | | ||||| ||| Sbjct 28644 GTTGTAGCCATCGCGGGAGCCAAGGATCTTCGCCATCCGCAGCTCCAGGCCCTTCAACTG 28585 Query 25489 TGCTTTCTCGCGCCTCACGATGAGGGCGCGCTCGTGCTTGGTCAGGGTCAGGCCCGCGAT 25548 | || ||||| | ||||| | | |||| ||| |||||||| || ||| | Sbjct 28584 CACGCCCTGGCGCCGGAAGATGATGCTGTGCTCCTGCGCGGTCAGGGCGAGCCCCAGCAG 28525 Query 25549 GAGGTCGGTTTTGCCGCCGCCGGCAGCGCCCCCGTAGCCGATGATGTCGGCGTCGGAGTT 25608 || || || || ||||||||||| ||||| |||||| || ||||||||| |||| Sbjct 28524 CAGCTCAGTCTTACCGCCGCCGGCCGCGCCGCCGTAGAAGAGGATGTCGGCCAGCGAGTA 28465 Query 25609 GTACGCCGCGGTCTGCGGCCCAGGCAGTGGCAACCA 25644 ||| ||| |||||||||||||||| | |||| ||| Sbjct 28464 GTAAGCCATGGTCTGCGGCCCAGGCTGAGGCACCCA 28429 Score = 80.6 bits (88), Expect = 7e-11 Identities = 216/318 (68%), Gaps = 18/318 (6%) Strand=Plus/Minus Query 24655 GTCGAACCACATGGCGTGCCGGCGGGCCAG--GATGGTGTTGTCGCGCCCGCCGCGGGCC 24712 ||||||||| | |||| || || || || || | | ||||| | |||||||||||| Sbjct 29341 GTCGAACCAGCGGTCGTGGCGCCGCGC-AGCAGAAGAT-TTGTCCTGGCCGCCGCGGGCC 29284 Query 24713 ACGTCCACGCCCA-GGCTGTCCATCGGTGCCAGTCGG-TCGGGCCGCTTCCACCGCGCCT 24770 || | |||| ||| ||| ||||| || || || ||| |||||| |||||| Sbjct 29283 GGATCAAACCCCATGGCCGTC-ATCGGA-CCTTTCTTCTCCGGCTCCTTCCAGCGCGCCA 29226 Query 24771 GCGCGGCCTCGACCCATGCTGTCGGAATGACCTGCCAC---GGGTCGTCCTCGATGCCCG 24827 || | || ||| | ||||| || | ||||||| |||||| || || || | Sbjct 29225 TTGCCAATTTGATCCACTCCGTCGGGATAAGCTGCCACACCGGGTCGGCCGCG---CCGG 29169 Query 24828 CGTTGAAGTCGCCGTACAGCATCTGGCTGCGCAATGGCTCGGGCAACGATTGCAGGGTGA 24887 || ||||||||||| ||||||||| |||| |||||||||||| | ||||| | Sbjct 29168 CGCTGAAGTCGCCGCGGAGCATCTGGGAACGCAGTGGCTCGGGCAAGGCCTGCAGCTGGG 29109 Query 24888 CGAGATACCCGCTATCGACGTA--GTACGGGTTATCGGTCACGCGCGCCGGAATGAACGT 24945 | || ||| ||| | || | || |||| || |||||| | || ||||| || Sbjct 29108 CCTTGTAACCG--GTCGCCATAAGGAACAGGTTGTCATCCACGCGGGATGGGATGAAGGT 29051 Query 24946 GCGCGACTTGGGCTGGAT 24963 ||| ||||||||| || Sbjct 29050 GCGGCTCTTGGGCTGCAT 29033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135831705465890