Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq9470 89.7 3e-13
seq10366 82.4 5e-11
>seq9470
Length=127963
Score = 89.7 bits (98), Expect = 3e-13
Identities = 203/304 (67%), Gaps = 1/304 (0%)
Strand=Plus/Plus
Query 25386 GTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGG 25445
|| || ||||| |||||| | |||||| |||| | | || || || | |||
Sbjct 52576 GTCGGGAAGGGCAGGGGCTCGCGGGAGAGCTGCAGCTTCGCCTGCTCGACATGGTTCAGA 52635
Query 25446 TAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAA 25505
|||| ||| ||||| ||||| ||||| || ||||| || || | || ||||| | |
Sbjct 52636 TAGAGGTGGGCGTCGCCCAGGGTGTGCACGAACTCGCCGGGCTGCAGGCCGGTGGCCTGG 52695
Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565
||| |||| || || || |||| ||||||||| || || || |||| || |
Sbjct 52696 GCCGTCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGG 52755
Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625
|| || || | |||||| ||| | || || || | | |||| |||| | ||||| |
Sbjct 52756 TCGGCC-GAGCGCTGGTAAAGCAGGCAGGACAGTTTTCCGTCCGCCACGAAGAACTGGAA 52814
Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACAC 25685
|| | || |||||| || || || || | | | ||| ||||||||||| | ||
Sbjct 52815 CAGGCAGTGGCACGGCGGCAGGGCCATGTCGTCGACGTCGGCCGGGTTCCAGGCCGAGAC 52874
Query 25686 GATG 25689
||||
Sbjct 52875 GATG 52878
>seq10366
Length=3198051
Score = 82.4 bits (90), Expect = 5e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832
||| || |||| || || || |||| |||||||||||| || || ||||| |||| ||
Sbjct 2452268 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCTAAATC 2452209
Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892
|| || | |||| |||||| |||||| ||||||| ||| || ||||| ||
Sbjct 2452208 CCCTTCAGCTCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 2452149
Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940
||| || || || ||||| || || || || | ||| ||||| ||
Sbjct 2452148 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 2452101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340075174014807
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |