Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq10785 147 1e-30
seq12839 140 2e-28
seq12095 129 4e-25
seq3977 107 1e-18
seq9956 102 5e-17
>seq10785
Length=1019
Score = 147 bits (162), Expect = 1e-30
Identities = 269/386 (70%), Gaps = 21/386 (5%)
Strand=Plus/Plus
Query 8224 GGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTG 8283
|||||| || ||||| || ||||||||||| |||| |||||| ||||| |||||||||||
Sbjct 411 GGCATCCACGCCAATATGTGCCTTCATGCCGAAGTACCACTGGTTGCCCTTCTTGGTCTG 470
Query 8284 ATGCATCTCCGGATCGCG----TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAA 8339
|||||||| ||||| || | | ||| ||||||||||||| ||||| || |||
Sbjct 471 GTGCATCTCAGGATCACGAGATTGGGTGC----TGTTCTTGGTCGAACTGGGCGCTGCAA 526
Query 8340 TGATGGTGGCATCGACCAAGGTGCCT-TGAGTCATCATGACGCCTGCTTC-GGCCAGCCA 8397
| | |||||||| || | ||| ||| || | | || | || | | | ||||| |
Sbjct 527 TCAATGTGGCATCCACGATGGTTCCTGTGCG-AAGCA-GCAGCTTTTTACTCTCCAGCAA 584
Query 8398 GCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCAGGTGGCGGAA 8457
| ||| | |||| | | ||| |||||||| || | |||| ||||| |||||
Sbjct 585 GTCCGTGACGATCTTCAGAATTTGCTCGGCCAGTTTGTGTTTTTCCAATAGGTGACGGAA 644
Query 8458 ATTCATGATGGTGGTGCGGTCCGGCAAGGCGCTATCCAGGGATAACCGGGCA---AACAG 8514
| || ||||||| | ||| ||| ||||||| || || || || || ||
Sbjct 645 ACGCAAGATGGTGCTCTCGTCAGGCGTGGCGCTACCC---CATGACAGGCCAACGAATTC 701
Query 8515 ACGCATGGAGGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCA 8574
|| | ||| || || || || ||||||||||| ||| || |||||| ||||
Sbjct 702 CCGAAACAAGGGCAT---GTGTAGTGCTTCTTCCATCGCTGGATCACTGAGGTTGAACCA 758
Query 8575 ATGCTGCATGCAGTGAATGCGTAGCA 8600
|||||||| |||||||||| ||||
Sbjct 759 CTGCTGCATAAAGTGAATGCGCAGCA 784
>seq12839
Length=204338
Score = 140 bits (154), Expect = 2e-28
Identities = 322/473 (68%), Gaps = 14/473 (3%)
Strand=Plus/Minus
Query 72166 ATATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTC 72225
|| ||| ||||||||| ||| || ||| | || || || || || | || || || |
Sbjct 82106 ATCTTTATATTGATGATTCATCTGCACTGCCACCAACGGAACTTCGGGCACGTGCACGAC 82047
Query 72226 GTGTTTATAAAGAAAATGGTGGTTTGA--GCATG-ATTATGATCGACTACCTGCAACTTA 72282
|| || ||| || |||| || | | || || |||||||| || |||||| | |
Sbjct 82046 GTATTGCCAAACAACATGGCGGCAAGCTGGGTTGTATCATGATCGATTATCTGCAATTGA 81987
Query 72283 TGCGCGTCCCCGAGCTGCAAGATAACCGAACGCTGG--AAATTGCCGAGATTTCTCGCTC 72340
|| || || | || |||||||| | ||| | |||| || ||||| ||
Sbjct 81986 TGAAAGTACCAGGCATGGGTGATAACCGT--GTTGGTGAGATTGGTGAAATTTCACGAAG 81929
Query 72341 ACTGAAGGCGTTGGCGAAGGAATTACAAGTACCG-GTGGTGGCATTGTCACAACTTAATC 72399
| || || | || |||||| | | || || || | ||| ||||||| ||||| |
Sbjct 81928 CTTAAAAGCCCTTGCCAAGGAAATG-ATGTGCCCTGTTATTGCACTGTCACAGCTTAACC 81870
Query 72400 GATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAG 72459
| || || ||| | ||| | | ||||| ||||||| || || |||||||||||||| |
Sbjct 81869 GTTCTCTGGAAAACCGTCCAAATAAACGTCCGGTAATGTCCGACTTACGTGAATCAGGTG 81810
Query 72460 CAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGG 72519
|||| |||||||| || || | ||||||||| | || || || || |||||| || |
Sbjct 81809 CAATCGAGCAGGATGCCGATTTAATTATGTTTATTTACCGTGATGAGGTTTATAACAAAG 81750
Query 72520 ATAGCGAAATGAAG--GGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAAT 72577
| ||||| |||| |||| || || | || || || || ||||| |||||||| ||
Sbjct 81749 A-GTCGAAA-GAAGCAGGCACAGCTGAAATTATCATTGGTAAACAACGTAATGGCCCGAT 81692
Query 72578 TGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTTTGATAA-CTAT 72629
|| || ||| | || || ||| | || |||||| | || ||| ||| ||||
Sbjct 81691 CGGGACTGTGCGTTTAGCCTTTGAAGGTCAATACACGCGCTTTAGTAATCTAT 81639
>seq12095
Length=15812
Score = 129 bits (142), Expect = 4e-25
Identities = 177/245 (72%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 72262 TGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCA-AGATAACCGAACGCTGGAA 72320
|||||||||||||||| || ||| |||| ||| || || || ||||| || |||
Sbjct 1365 TGATCGACTACCTGCAGCTGATGAGCGT-GCCGGGCAACAGCGAAAACCGCGCGACTGAA 1423
Query 72321 ATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTG 72380
|| | ||||| || || || ||||||| |||| |||||| | || || |||||| |
Sbjct 1424 ATCTCGGAGATCTCGCGTTCGCTGAAGGGCCTGGCCAAGGAACTGCACGTGCCGGTGATC 1483
Query 72381 GCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCA 72440
|| | || || || || || ||||| ||| |||| | ||||| || ||||||| |
Sbjct 1484 GCGCTTTCGCAGCTCAACCGCTCGCTGGAAACGCGTACCGACAAGCGCCCGGTAATGGCC 1543
Query 72441 GATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGC 72500
||| | || ||||| || ||||| |||||||| || ||| |||| | || | || |||
Sbjct 1544 GATCTTCGCGAATCGGGCGCAATCGAGCAGGATGCGGACATGATCGTCTTCATCTACCGC 1603
Query 72501 GACGA 72505
|||||
Sbjct 1604 GACGA 1608
>seq3977
Length=12848
Score = 107 bits (118), Expect = 1e-18
Identities = 351/535 (66%), Gaps = 13/535 (2%)
Strand=Plus/Minus
Query 8135 TGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTG 8194
||||| | || |||||||||| |||| | | ||| ||| ||||||| || ||
Sbjct 4574 TGCTCATTGCCGTGCAGCAGATCGGGCAGCGGGTGCTTGTCGTGCACGTTGGCTGCTGTC 4515
Query 8195 GTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCA 8254
|| |||||| | ||| || | | || || || ||||| |||||| ||
Sbjct 4514 ACCACAGCGCTGTGCGCCAGCCCGGTGCGGCTGTCCACGCCGATGTGCATCTTCATCCCG 4455
Query 8255 AAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTG 8314
|| | |||||| | ||| || ||||| |||||||| || ||||| |||| || |
Sbjct 4454 AAATACCACTGCTGGCCCTTGCGCGTCTGGTGCATCTCGGGGTCGCGCTGCTTGTCCGCG 4395
Query 8315 TTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATC 8374
|||||||| || ||||| || | ||||||||||| || || | |||||| || |
Sbjct 4394 TTCTTGGTGGAACTGGGCGCGCCGATGATGGTGGCGTCCACGATGGTGCCGGTGCCCACC 4335
Query 8375 ATGACGCCT-GCTTCGGC--CAGC-CAGCGATTGATGGTCTTGAACAATTGGCGGGCCAG 8430
| | |||| || | || || | | | | | ||| |||||| | ||||
Sbjct 4334 TTCAAGCCTCGCGCCTGCAGCACCTCCCCCACT-TTGG---CAAACAATGCCTCGCCCAG 4279
Query 8431 TTGATGCTGCTCCAGCAGGTGGCGGAAATTCATGATGGTGGTGCGGTCCGGCA-AGGCGC 8489
|| ||||||||||||||| |||| || |||| | ||||| | ||| |||| | || |
Sbjct 4278 TTTGTGCTGCTCCAGCAGGCGGCGAAACTTCAACAGCGTGGTCCCGTCAGGCACACGCTC 4219
Query 8490 TATCCAGGGAT--AACCGGGCAAACAGACGCATGGAGGCGATTTCGTACAGAGCATCTTC 8547
|| ||| | | |||| | |||| | | | | ||| ||| || |||||
Sbjct 4218 CCGCCCCAGATCGATGCCCACAAAGCGGCGCAGCGCCGTGCTGTCGAGCAGGGCCTCTTC 4159
Query 8548 CATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTC 8607
|| ||||| ||||||| |||| ||||||| | ||| || || |||||| |||
Sbjct 4158 GCAGGCTTCATCGGCCAGGTTGAACCAGTGCTGCACGAAGTACATCCGCAGCATGCGTTC 4099
Query 8608 CAG-CGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGAC 8661
|| | ||| ||| | || || || || || |||||||| || ||||||||
Sbjct 4098 GAGCCCGAT-CGGTGGGCGCCCGTTGCCGGCTTTGGGGTAGTGAGGTTCGATGAC 4045
>seq9956
Length=123604
Score = 102 bits (112), Expect = 5e-17
Identities = 112/146 (77%), Gaps = 6/146 (4%)
Strand=Plus/Minus
Query 72438 TCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTAT 72497
|| || ||||||||||| || || |||||||| || |||||| ||||| ||||| | ||
Sbjct 100316 TCTGACTTACGTGAATCCGGCGCGATTGAGCAAGATGCAGACTTGATTTTGTTTATCTAC 100257
Query 72498 CGCGACGAAGTTTATCACCCGGATAGC---GAAATGAAGGGCATTGCCGAGGTAATTATC 72554
|| |||||||| ||| ||||||| ||| || | ||||| | ||||| | |||||
Sbjct 100256 CGTGACGAAGTGTATAACCCGGACAGCCCTGACA--AAGGG-ACGGCCGAAATTATTATT 100200
Query 72555 GGAAAGCAACGAAATGGCCCAATTGG 72580
|| ||||| || || ||||| |||||
Sbjct 100199 GGTAAGCAGCGTAACGGCCCGATTGG 100174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 303179546769939
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |