Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq10785 147 1e-30 seq12839 140 2e-28 seq12095 129 4e-25 seq3977 107 1e-18 seq9956 102 5e-17 >seq10785 Length=1019 Score = 147 bits (162), Expect = 1e-30 Identities = 269/386 (70%), Gaps = 21/386 (5%) Strand=Plus/Plus Query 8224 GGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTG 8283 |||||| || ||||| || ||||||||||| |||| |||||| ||||| ||||||||||| Sbjct 411 GGCATCCACGCCAATATGTGCCTTCATGCCGAAGTACCACTGGTTGCCCTTCTTGGTCTG 470 Query 8284 ATGCATCTCCGGATCGCG----TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAA 8339 |||||||| ||||| || | | ||| ||||||||||||| ||||| || ||| Sbjct 471 GTGCATCTCAGGATCACGAGATTGGGTGC----TGTTCTTGGTCGAACTGGGCGCTGCAA 526 Query 8340 TGATGGTGGCATCGACCAAGGTGCCT-TGAGTCATCATGACGCCTGCTTC-GGCCAGCCA 8397 | | |||||||| || | ||| ||| || | | || | || | | | ||||| | Sbjct 527 TCAATGTGGCATCCACGATGGTTCCTGTGCG-AAGCA-GCAGCTTTTTACTCTCCAGCAA 584 Query 8398 GCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCAGGTGGCGGAA 8457 | ||| | |||| | | ||| |||||||| || | |||| ||||| ||||| Sbjct 585 GTCCGTGACGATCTTCAGAATTTGCTCGGCCAGTTTGTGTTTTTCCAATAGGTGACGGAA 644 Query 8458 ATTCATGATGGTGGTGCGGTCCGGCAAGGCGCTATCCAGGGATAACCGGGCA---AACAG 8514 | || ||||||| | ||| ||| ||||||| || || || || || || Sbjct 645 ACGCAAGATGGTGCTCTCGTCAGGCGTGGCGCTACCC---CATGACAGGCCAACGAATTC 701 Query 8515 ACGCATGGAGGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCA 8574 || | ||| || || || || ||||||||||| ||| || |||||| |||| Sbjct 702 CCGAAACAAGGGCAT---GTGTAGTGCTTCTTCCATCGCTGGATCACTGAGGTTGAACCA 758 Query 8575 ATGCTGCATGCAGTGAATGCGTAGCA 8600 |||||||| |||||||||| |||| Sbjct 759 CTGCTGCATAAAGTGAATGCGCAGCA 784 >seq12839 Length=204338 Score = 140 bits (154), Expect = 2e-28 Identities = 322/473 (68%), Gaps = 14/473 (3%) Strand=Plus/Minus Query 72166 ATATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTC 72225 || ||| ||||||||| ||| || ||| | || || || || || | || || || | Sbjct 82106 ATCTTTATATTGATGATTCATCTGCACTGCCACCAACGGAACTTCGGGCACGTGCACGAC 82047 Query 72226 GTGTTTATAAAGAAAATGGTGGTTTGA--GCATG-ATTATGATCGACTACCTGCAACTTA 72282 || || ||| || |||| || | | || || |||||||| || |||||| | | Sbjct 82046 GTATTGCCAAACAACATGGCGGCAAGCTGGGTTGTATCATGATCGATTATCTGCAATTGA 81987 Query 72283 TGCGCGTCCCCGAGCTGCAAGATAACCGAACGCTGG--AAATTGCCGAGATTTCTCGCTC 72340 || || || | || |||||||| | ||| | |||| || ||||| || Sbjct 81986 TGAAAGTACCAGGCATGGGTGATAACCGT--GTTGGTGAGATTGGTGAAATTTCACGAAG 81929 Query 72341 ACTGAAGGCGTTGGCGAAGGAATTACAAGTACCG-GTGGTGGCATTGTCACAACTTAATC 72399 | || || | || |||||| | | || || || | ||| ||||||| ||||| | Sbjct 81928 CTTAAAAGCCCTTGCCAAGGAAATG-ATGTGCCCTGTTATTGCACTGTCACAGCTTAACC 81870 Query 72400 GATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAG 72459 | || || ||| | ||| | | ||||| ||||||| || || |||||||||||||| | Sbjct 81869 GTTCTCTGGAAAACCGTCCAAATAAACGTCCGGTAATGTCCGACTTACGTGAATCAGGTG 81810 Query 72460 CAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGG 72519 |||| |||||||| || || | ||||||||| | || || || || |||||| || | Sbjct 81809 CAATCGAGCAGGATGCCGATTTAATTATGTTTATTTACCGTGATGAGGTTTATAACAAAG 81750 Query 72520 ATAGCGAAATGAAG--GGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAAT 72577 | ||||| |||| |||| || || | || || || || ||||| |||||||| || Sbjct 81749 A-GTCGAAA-GAAGCAGGCACAGCTGAAATTATCATTGGTAAACAACGTAATGGCCCGAT 81692 Query 72578 TGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTTTGATAA-CTAT 72629 || || ||| | || || ||| | || |||||| | || ||| ||| |||| Sbjct 81691 CGGGACTGTGCGTTTAGCCTTTGAAGGTCAATACACGCGCTTTAGTAATCTAT 81639 >seq12095 Length=15812 Score = 129 bits (142), Expect = 4e-25 Identities = 177/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 72262 TGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCA-AGATAACCGAACGCTGGAA 72320 |||||||||||||||| || ||| |||| ||| || || || ||||| || ||| Sbjct 1365 TGATCGACTACCTGCAGCTGATGAGCGT-GCCGGGCAACAGCGAAAACCGCGCGACTGAA 1423 Query 72321 ATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTG 72380 || | ||||| || || || ||||||| |||| |||||| | || || |||||| | Sbjct 1424 ATCTCGGAGATCTCGCGTTCGCTGAAGGGCCTGGCCAAGGAACTGCACGTGCCGGTGATC 1483 Query 72381 GCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCA 72440 || | || || || || || ||||| ||| |||| | ||||| || ||||||| | Sbjct 1484 GCGCTTTCGCAGCTCAACCGCTCGCTGGAAACGCGTACCGACAAGCGCCCGGTAATGGCC 1543 Query 72441 GATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGC 72500 ||| | || ||||| || ||||| |||||||| || ||| |||| | || | || ||| Sbjct 1544 GATCTTCGCGAATCGGGCGCAATCGAGCAGGATGCGGACATGATCGTCTTCATCTACCGC 1603 Query 72501 GACGA 72505 ||||| Sbjct 1604 GACGA 1608 >seq3977 Length=12848 Score = 107 bits (118), Expect = 1e-18 Identities = 351/535 (66%), Gaps = 13/535 (2%) Strand=Plus/Minus Query 8135 TGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTG 8194 ||||| | || |||||||||| |||| | | ||| ||| ||||||| || || Sbjct 4574 TGCTCATTGCCGTGCAGCAGATCGGGCAGCGGGTGCTTGTCGTGCACGTTGGCTGCTGTC 4515 Query 8195 GTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCA 8254 || |||||| | ||| || | | || || || ||||| |||||| || Sbjct 4514 ACCACAGCGCTGTGCGCCAGCCCGGTGCGGCTGTCCACGCCGATGTGCATCTTCATCCCG 4455 Query 8255 AAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTG 8314 || | |||||| | ||| || ||||| |||||||| || ||||| |||| || | Sbjct 4454 AAATACCACTGCTGGCCCTTGCGCGTCTGGTGCATCTCGGGGTCGCGCTGCTTGTCCGCG 4395 Query 8315 TTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATC 8374 |||||||| || ||||| || | ||||||||||| || || | |||||| || | Sbjct 4394 TTCTTGGTGGAACTGGGCGCGCCGATGATGGTGGCGTCCACGATGGTGCCGGTGCCCACC 4335 Query 8375 ATGACGCCT-GCTTCGGC--CAGC-CAGCGATTGATGGTCTTGAACAATTGGCGGGCCAG 8430 | | |||| || | || || | | | | | ||| |||||| | |||| Sbjct 4334 TTCAAGCCTCGCGCCTGCAGCACCTCCCCCACT-TTGG---CAAACAATGCCTCGCCCAG 4279 Query 8431 TTGATGCTGCTCCAGCAGGTGGCGGAAATTCATGATGGTGGTGCGGTCCGGCA-AGGCGC 8489 || ||||||||||||||| |||| || |||| | ||||| | ||| |||| | || | Sbjct 4278 TTTGTGCTGCTCCAGCAGGCGGCGAAACTTCAACAGCGTGGTCCCGTCAGGCACACGCTC 4219 Query 8490 TATCCAGGGAT--AACCGGGCAAACAGACGCATGGAGGCGATTTCGTACAGAGCATCTTC 8547 || ||| | | |||| | |||| | | | | ||| ||| || ||||| Sbjct 4218 CCGCCCCAGATCGATGCCCACAAAGCGGCGCAGCGCCGTGCTGTCGAGCAGGGCCTCTTC 4159 Query 8548 CATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTC 8607 || ||||| ||||||| |||| ||||||| | ||| || || |||||| ||| Sbjct 4158 GCAGGCTTCATCGGCCAGGTTGAACCAGTGCTGCACGAAGTACATCCGCAGCATGCGTTC 4099 Query 8608 CAG-CGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGAC 8661 || | ||| ||| | || || || || || |||||||| || |||||||| Sbjct 4098 GAGCCCGAT-CGGTGGGCGCCCGTTGCCGGCTTTGGGGTAGTGAGGTTCGATGAC 4045 >seq9956 Length=123604 Score = 102 bits (112), Expect = 5e-17 Identities = 112/146 (77%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 72438 TCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTAT 72497 || || ||||||||||| || || |||||||| || |||||| ||||| ||||| | || Sbjct 100316 TCTGACTTACGTGAATCCGGCGCGATTGAGCAAGATGCAGACTTGATTTTGTTTATCTAC 100257 Query 72498 CGCGACGAAGTTTATCACCCGGATAGC---GAAATGAAGGGCATTGCCGAGGTAATTATC 72554 || |||||||| ||| ||||||| ||| || | ||||| | ||||| | ||||| Sbjct 100256 CGTGACGAAGTGTATAACCCGGACAGCCCTGACA--AAGGG-ACGGCCGAAATTATTATT 100200 Query 72555 GGAAAGCAACGAAATGGCCCAATTGG 72580 || ||||| || || ||||| ||||| Sbjct 100199 GGTAAGCAGCGTAACGGCCCGATTGG 100174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303179546769939