Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_005887.1
Length=42415
Score E
Sequences producing significant alignments: (Bits) Value
seq160 132 1e-26
seq1205 116 1e-21
>seq160
Length=1509
Score = 132 bits (146), Expect = 1e-26
Identities = 168/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 24023 CGGCGCTCGGGAATCTCCTGCCGCACATCGTAAATCCCTTCCATGCCTCGCAGCTTGTGG 24082
||||| || || || || | || || ||||| || ||||||||||| | || || |||
Sbjct 868 CGGCGTTCCGGGATTTCTTCGCGTACGTCGTAGATACCTTCCATGCCCCTGAGTTTATGG 809
Query 24083 TTCAGCGCGATCTCGGTGATCTCTTTCGGGATACCCATATTCATCATGTGGCCCTTGGCC 24142
||||| ||||| || | ||| | || | || ||||| || |||||| ||||| |||
Sbjct 808 TTCAGTGCGATTTCCGATATCGCATTGGAAATCCCCATGTTTCGCATGTGCCCCTTTGCC 749
Query 24143 GTGCTGCGCGTGTCGTGCGGTGTGAAGCGCCGGGCTTCGAG--ATCGCCTCGCAGGAACG 24200
|||||||||||||| || ||||||||||| || ||||| |||||| || ||| |
Sbjct 748 GTGCTGCGCGTGTCATGAGGTGTGAAGCG--GGTAATCGAGATATCGCCGCGTTCGAAGG 691
Query 24201 CCCGATCGATAGCCGCCCACAGCGTCGTGTTGCCGACGTGCGTGTTGCC 24249
| || ||| |||||||| ||||| || |||||||| || | |||
Sbjct 690 CTCGGGTGATGGCCGCCCATAGCGTAGTTGGACCGACGTGAGTATCGCC 642
>seq1205
Length=48877
Score = 116 bits (128), Expect = 1e-21
Identities = 121/159 (76%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 481 AAGCTGACCGCAAAGCAGCAGCTGTTCGTCGACGAGTATCTGGTCGATCTGAACGCGTCG 540
||||| ||||| |||||||||| ||||| ||||| |||||| |||||||||||| |
Sbjct 34956 AAGCTCACCGCGAAGCAGCAGCGCTTCGTAGACGAATATCTGATCGATCTGAACGGCGCC 35015
Query 541 GCCGCCGCGCGCCGCGCCGGATACAGCGCGAAGACCGCCGGCCAGATGGGCGATGAGAAC 600
|| || |||||||| ||||| || |||| |||||| || | ||||| | || ||||||
Sbjct 35016 GCGGCGGCGCGCCGTGCCGGCTATAGCGTGAAGACGGCGCGTCAGATCGCGGACGAGAAC 35075
Query 601 CTCAAGAAACCGCAAATTGCTGCAAAGATCGAAGCCGCG 639
|| ||||| | |||| || |||||| ||||||
Sbjct 35076 CTTTCTAAACCTGACATTGTCGCCGCGATCGAGGCCGCG 35114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 135582150100766
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |