Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq160 132 1e-26 seq1205 116 1e-21 >seq160 Length=1509 Score = 132 bits (146), Expect = 1e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24023 CGGCGCTCGGGAATCTCCTGCCGCACATCGTAAATCCCTTCCATGCCTCGCAGCTTGTGG 24082 ||||| || || || || | || || ||||| || ||||||||||| | || || ||| Sbjct 868 CGGCGTTCCGGGATTTCTTCGCGTACGTCGTAGATACCTTCCATGCCCCTGAGTTTATGG 809 Query 24083 TTCAGCGCGATCTCGGTGATCTCTTTCGGGATACCCATATTCATCATGTGGCCCTTGGCC 24142 ||||| ||||| || | ||| | || | || ||||| || |||||| ||||| ||| Sbjct 808 TTCAGTGCGATTTCCGATATCGCATTGGAAATCCCCATGTTTCGCATGTGCCCCTTTGCC 749 Query 24143 GTGCTGCGCGTGTCGTGCGGTGTGAAGCGCCGGGCTTCGAG--ATCGCCTCGCAGGAACG 24200 |||||||||||||| || ||||||||||| || ||||| |||||| || ||| | Sbjct 748 GTGCTGCGCGTGTCATGAGGTGTGAAGCG--GGTAATCGAGATATCGCCGCGTTCGAAGG 691 Query 24201 CCCGATCGATAGCCGCCCACAGCGTCGTGTTGCCGACGTGCGTGTTGCC 24249 | || ||| |||||||| ||||| || |||||||| || | ||| Sbjct 690 CTCGGGTGATGGCCGCCCATAGCGTAGTTGGACCGACGTGAGTATCGCC 642 >seq1205 Length=48877 Score = 116 bits (128), Expect = 1e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 481 AAGCTGACCGCAAAGCAGCAGCTGTTCGTCGACGAGTATCTGGTCGATCTGAACGCGTCG 540 ||||| ||||| |||||||||| ||||| ||||| |||||| |||||||||||| | Sbjct 34956 AAGCTCACCGCGAAGCAGCAGCGCTTCGTAGACGAATATCTGATCGATCTGAACGGCGCC 35015 Query 541 GCCGCCGCGCGCCGCGCCGGATACAGCGCGAAGACCGCCGGCCAGATGGGCGATGAGAAC 600 || || |||||||| ||||| || |||| |||||| || | ||||| | || |||||| Sbjct 35016 GCGGCGGCGCGCCGTGCCGGCTATAGCGTGAAGACGGCGCGTCAGATCGCGGACGAGAAC 35075 Query 601 CTCAAGAAACCGCAAATTGCTGCAAAGATCGAAGCCGCG 639 || ||||| | |||| || |||||| |||||| Sbjct 35076 CTTTCTAAACCTGACATTGTCGCCGCGATCGAGGCCGCG 35114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135582150100766