Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq13887 100 3e-16 >seq13887 Length=3975994 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 |||||||| |||||| | ||||| || | ||| |||| ||||| ||||||||||| || Sbjct 2240719 TTAGGCTGCAAACATGTTAAAGGCATCCTGTTATATGGGCCTCCAGGTTGCGGTAAGACT 2240660 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAAT 164616 | |||||||| |||| |||| | || ||| | || || |||| | || || Sbjct 2240659 CTGTTGGCTCGACAGATTG-GCAAGATGTTGAATGCAAGAGAGCC--TAAAGTGGTCAAC 2240603 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || || ||| | | ||||||||||| || |||||||| ||||| || | || | ||| Sbjct 2240602 GGGCCGGAAATTCTCAACAAATATGTGGGAGAGTCAGAGGCTAACATTCGTAAACTCTTT 2240543 Query 164677 CAGGAGGCTGAAGAAGAACAAA 164698 || |||||||| || |||| Sbjct 2240542 GCTGATGCTGAAGAGGAGCAAA 2240521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595759834544400