Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq7355 145 8e-30 >seq7355 Length=5246521 Score = 145 bits (160), Expect = 8e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| |||||||||||||||||||||||||| || | Sbjct 5156468 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 5156527 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 ||||||||||||| || || | || || ||| |||||||||||||| ||||| |||| Sbjct 5156528 TGCCACAGGCTGAGAACCATGGGCCTGACATCAAGGAGCACGTGAACTCGCTGGGGGAGA 5156587 Query 10260 ATCTAAAGACCCTAAGGCTTCGCTTGCG 10287 | || |||||||| |||| || |||| Sbjct 5156588 AGCTGAAGACCCTCCGGCTGCGGCTGCG 5156615 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || | || |||||||||||||||||||| |||||||| || || ||||| | Sbjct 5158785 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5158844 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | |||||||| | ||| || Sbjct 5158845 TAGAATCCTACATGACAACGAAGAT 5158869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547276162707840