Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq6590 170 3e-37
seq9575 109 8e-19
>seq6590
Length=8745084
Score = 170 bits (188), Expect = 3e-37
Identities = 220/304 (72%), Gaps = 0/304 (0%)
Strand=Plus/Minus
Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732
|||| | ||| | || || ||||| ||||| ||||| || |||| |||||||| || |
Sbjct 4161062 GAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 4161003
Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792
||| | |||| ||| ||| || || ||||| ||||| ||||| || ||||||||
Sbjct 4161002 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCGAAAGTGCTAGGCTTCCAGTACT 4160943
Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852
| || || || || || |||| || ||||| ||||| || || ||||| || |
Sbjct 4160942 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCCCCGGCTTCTA 4160883
Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912
||| |||| || |||||||||| |||||||||||| || |||| | ||| ||||
Sbjct 4160882 CCATGGTCTCCCCAAAGATGGCGTCGGGACGGGGCTTCTCTACCAGAAGGGCGGGATACA 4160823
Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972
||||| || || ||||||||||| || || | || ||||| |||||||| ||||
Sbjct 4160822 GCTCCATGGCATCTATGTCTCCGTAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 4160763
Query 8973 CTGT 8976
||||
Sbjct 4160762 CTGT 4160759
Score = 163 bits (180), Expect = 4e-35
Identities = 186/250 (74%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672
|| || | ||| || | | | ||||| |||| || || || | |||||||||||| |||
Sbjct 4159399 CCTATCAGGATTAGCCTACTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCT 4159340
Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732
|||| || ||||| || |||||||| ||||||| ||||| || || || ||||||||
Sbjct 4159339 TGTTTAAGTACATCACATACTCTGTTATGTTCCCGCAGCCAAATGGTGGCATACATCATC 4159280
Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792
|||||||||||||| ||||| |||| || || ||||| | || | ||| || |
Sbjct 4159279 AGACCAGGCACCAGACCAAAGACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATA 4159220
Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCG 9852
| || || |||||||| | ||||| ||||||||| | ||| |||||||| || |||
Sbjct 4159219 TGAGGCGGGTAGATCATTTCAACCTGAGTATCTTTGACAGTGGGAGGATACATCTCTCCG 4159160
Query 9853 TCAATAATCT 9862
| ||| ||||
Sbjct 4159159 TTAATCATCT 4159150
Score = 109 bits (120), Expect = 8e-19
Identities = 134/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | ||
Sbjct 4158371 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 4158312
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
||| || || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 4158311 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 4158252
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGATT 10207
||| |||| | || | ||||| ||||| |||||| | | || ||| || || |
Sbjct 4158251 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAGCTC 4158192
Query 10208 TTT 10210
|||
Sbjct 4158191 TTT 4158189
>seq9575
Length=4383032
Score = 109 bits (120), Expect = 8e-19
Identities = 158/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| ||||| || || || || ||||| | |||||||| | || || |||||| |||
Sbjct 3956509 AAGCCCACCTCACCACCAAATGTGCTTGCCTTCCAGTACTCTGGAGAACAGATGGGGTTT 3956450
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
| | |||||| || |||||||| |||||||||| || | || ||||| || ||||||
Sbjct 3956449 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCCATTTCTATCATACTCTCCCCAAAGATG 3956390
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
| ||| ||| || ||| || | | | || | ||| || |||| ||| |||||||||
Sbjct 3956389 GAGTTTGGATGGCACTTCTCAAGAAGTAGCCCCGGGTAGAATTCCAAAGCATCGATGTCT 3956330
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| || || || | || || || || ||||| || ||||
Sbjct 3956329 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCACCTG 3956287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708391429062960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |