Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq899 127 2e-24 seq6889 107 2e-18 seq12661 104 2e-17 seq12849 96.9 3e-15 seq9853 89.7 5e-13 >seq899 Length=2520420 Score = 127 bits (140), Expect = 2e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 || || | || ||||| ||||| |||| |||||||||| ||| || || || || | || Sbjct 2264391 AACTTAAAACACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGT 2264450 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 | || || || ||| ||| ||||||||||| ||| ||||||| | || |||| Sbjct 2264451 TGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCT 2264510 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | ||||| || || || |||||||| | || || ||||||||| ||| |||||| Sbjct 2264511 GGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAC 2264570 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | |||||||| || || || | || ||||| ||||||||||| Sbjct 2264571 TGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || || || || | ||| || || | Sbjct 2264630 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264689 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| ||| ||||||| | || ||||| ||||| || Sbjct 2264690 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264749 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||||||| ||| |||||| | | || || Sbjct 2264750 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2264809 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||| ||||||||||| Sbjct 2264810 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || || || || | ||| || || | Sbjct 2264858 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264917 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| ||| ||||||| | || ||||| ||||| || Sbjct 2264918 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264977 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||||||| ||| |||||| | | || || Sbjct 2264978 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2265037 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||| ||||||||||| Sbjct 2265038 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || || || || | ||| || || | Sbjct 2265086 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265145 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| ||| ||||||| | || ||||| ||||| || Sbjct 2265146 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2265205 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||||||| ||| |||||| | | || || Sbjct 2265206 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2265265 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||| ||||||||||| Sbjct 2265266 TCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || || || || | ||| || || | Sbjct 2265314 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265373 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| ||| ||||||| || || || || ||||| || Sbjct 2265374 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGG 2265433 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || |||||||| || | || || ||||||| ||| |||||| | ||| || || Sbjct 2265434 ATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCA-CTTGGCTCCAC 2265492 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || |||||||| ||||| || || || |||||||||||||| Sbjct 2265493 CTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540 >seq6889 Length=11136585 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 1034009 CCACCCCTCAGACGGACTACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1034068 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | |||| |||||||| || ||| ||||||| | || ||||| || || ||| Sbjct 1034069 AGAGTGCGGCAATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1034128 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| ||| ||| |||||| | | || || Sbjct 1034129 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACC 1034188 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 1034189 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || || || || | ||| ||||| | |||| | ||| ||| Sbjct 1033799 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1033858 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| ||||||| | || ||||| || || ||||| ||||| || || | Sbjct 1033859 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1033918 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| || |||||| | | || | || | ||||||| || Sbjct 1033919 ATCTTGGCCTTCACGTTCTCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGCCTTG 1033978 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||||||||| Sbjct 1033979 CCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007 >seq12661 Length=3984070 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || || || || | || || || || |||| | |||||| Sbjct 2676664 CACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATCCTC 2676605 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| || ||||||| | | ||||| || || || || || || ||||| | Sbjct 2676604 CAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 2676545 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| || ||||| | ||||||| | | ||||| |||| |||||||| || Sbjct 2676544 GATTTTGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 2676485 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||||||||| Sbjct 2676484 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455 >seq12849 Length=3269951 Score = 96.9 bits (106), Expect = 3e-15 Identities = 220/327 (67%), Gaps = 12/327 (4%) Strand=Plus/Minus Query 43612 CTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTCCCT 43671 |||| || | ||| |||||| ||||| ||||||||||||||| || ||| || |||| Sbjct 3072211 CTTCCTCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCT 3072152 Query 43672 GCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCCTAT 43731 || | ||| | | || | || || || || || || || ||||| |||| Sbjct 3072151 TTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTAT 3072092 Query 43732 AGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTGATC 43791 | ||||| ||||| || | || ||||| ||||| ||| | |||||||||| || | Sbjct 3072091 AATCTTCATCTATGACACAAGCTCCTACATCTATGACGT----TGCTGCCAAGCCAGAAC 3072036 Query 43792 TGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTACGA 43851 | ||||| || ||||| || ||| | ||||| | | ||||| ||||| || | Sbjct 3072035 GAGGAGCCACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCACAA 3071976 Query 43852 G-GCTGTAGCCTTTG--GGTTCTATGGCCAAATCT--TGGGCGCTGTACAGATCGTACCC 43906 | || | || | | ||| || || ||||| | ||| |||| ||| | ||| || Sbjct 3071975 GCACTTTCTCCATCGGTGGTACTGTG---TAATCTCATAGGCACTGTGCAGGTTGTAGCC 3071919 Query 43907 GGCGGAGAGCTTGGATCCTTTGGTGGG 43933 |||| | || ||| || |||||||| Sbjct 3071918 CGCGGTGCGCGCGGACCCGTTGGTGGG 3071892 >seq9853 Length=4041771 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || | ||||| ||||| || | || || || | || || || | Sbjct 359783 CCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGAC 359842 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||||| ||||||||| ||| ||||| | | ||||| ||||| || Sbjct 359843 AGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGG 359902 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || | ||| | ||||| || ||||| | | |||||| | | ||||| Sbjct 359903 ATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGACC 359962 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || | || || ||||||||||||||||| Sbjct 359963 TCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCAT 360009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448206814785240