Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq899 127 2e-24
seq6889 107 2e-18
seq12661 104 2e-17
seq12849 96.9 3e-15
seq9853 89.7 5e-13
>seq899
Length=2520420
Score = 127 bits (140), Expect = 2e-24
Identities = 171/238 (72%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829
|| || | || ||||| ||||| |||| |||||||||| ||| || || || || | ||
Sbjct 2264391 AACTTAAAACACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGT 2264450
Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889
| || || || ||| ||| ||||||||||| ||| ||||||| | || ||||
Sbjct 2264451 TGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCT 2264510
Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949
| ||||| || || || |||||||| | || || ||||||||| ||| ||||||
Sbjct 2264511 GGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAC 2264570
Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | || || || | |||||||| || || || | || ||||| |||||||||||
Sbjct 2264571 TGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | |||| ||||| ||| || || || || | ||| || || |
Sbjct 2264630 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264689
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| ||| ||||||| | || ||||| ||||| ||
Sbjct 2264690 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264749
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || |||||||| | || || ||||||||| ||| |||||| | | || ||
Sbjct 2264750 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2264809
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || | || ||||| |||||||||||
Sbjct 2264810 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | |||| ||||| ||| || || || || | ||| || || |
Sbjct 2264858 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264917
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| ||| ||||||| | || ||||| ||||| ||
Sbjct 2264918 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264977
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || |||||||| | || || ||||||||| ||| |||||| | | || ||
Sbjct 2264978 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2265037
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || | || ||||| |||||||||||
Sbjct 2265038 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | |||| ||||| ||| || || || || | ||| || || |
Sbjct 2265086 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265145
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| ||| ||||||| | || ||||| ||||| ||
Sbjct 2265146 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2265205
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || |||||||| | || || ||||||||| ||| |||||| | | || ||
Sbjct 2265206 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2265265
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || | || ||||| |||||||||||
Sbjct 2265266 TCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | |||| ||||| ||| || || || || | ||| || || |
Sbjct 2265314 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265373
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| ||| ||||||| || || || || ||||| ||
Sbjct 2265374 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGG 2265433
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959
|| |||||||| || | || || ||||||| ||| |||||| | ||| || ||
Sbjct 2265434 ATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCA-CTTGGCTCCAC 2265492
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || |||||||| ||||| || || || ||||||||||||||
Sbjct 2265493 CTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540
>seq6889
Length=11136585
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| || | |||| ||||| || || || || || | ||| |||||
Sbjct 1034009 CCACCCCTCAGACGGACTACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1034068
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | |||| |||||||| || ||| ||||||| | || ||||| || || |||
Sbjct 1034069 AGAGTGCGGCAATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1034128
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| || || | || || ||||| ||| ||| |||||| | | || ||
Sbjct 1034129 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACC 1034188
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || || || ||||| |||||||||||
Sbjct 1034189 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||||| || || || || || | ||| ||||| | |||| | ||| |||
Sbjct 1033799 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1033858
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| || ||| ||||||| | || ||||| || || ||||| ||||| || || |
Sbjct 1033859 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1033918
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| ||| || |||||| | | || | || | ||||||| ||
Sbjct 1033919 ATCTTGGCCTTCACGTTCTCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGCCTTG 1033978
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || ||||| |||||||||||
Sbjct 1033979 CCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007
>seq12661
Length=3984070
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| ||||| || || || || || | || || || || |||| | ||||||
Sbjct 2676664 CACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATCCTC 2676605
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||||||| || ||||||| | | ||||| || || || || || || ||||| |
Sbjct 2676604 CAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 2676545
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||||| || ||||| | ||||||| | | ||||| |||| |||||||| ||
Sbjct 2676544 GATTTTGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 2676485
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || |||||||||||||||||
Sbjct 2676484 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455
>seq12849
Length=3269951
Score = 96.9 bits (106), Expect = 3e-15
Identities = 220/327 (67%), Gaps = 12/327 (4%)
Strand=Plus/Minus
Query 43612 CTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTCCCT 43671
|||| || | ||| |||||| ||||| ||||||||||||||| || ||| || ||||
Sbjct 3072211 CTTCCTCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCT 3072152
Query 43672 GCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCCTAT 43731
|| | ||| | | || | || || || || || || || ||||| ||||
Sbjct 3072151 TTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTAT 3072092
Query 43732 AGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTGATC 43791
| ||||| ||||| || | || ||||| ||||| ||| | |||||||||| || |
Sbjct 3072091 AATCTTCATCTATGACACAAGCTCCTACATCTATGACGT----TGCTGCCAAGCCAGAAC 3072036
Query 43792 TGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTACGA 43851
| ||||| || ||||| || ||| | ||||| | | ||||| ||||| || |
Sbjct 3072035 GAGGAGCCACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCACAA 3071976
Query 43852 G-GCTGTAGCCTTTG--GGTTCTATGGCCAAATCT--TGGGCGCTGTACAGATCGTACCC 43906
| || | || | | ||| || || ||||| | ||| |||| ||| | ||| ||
Sbjct 3071975 GCACTTTCTCCATCGGTGGTACTGTG---TAATCTCATAGGCACTGTGCAGGTTGTAGCC 3071919
Query 43907 GGCGGAGAGCTTGGATCCTTTGGTGGG 43933
|||| | || ||| || ||||||||
Sbjct 3071918 CGCGGTGCGCGCGGACCCGTTGGTGGG 3071892
>seq9853
Length=4041771
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||| || || | ||||| ||||| || | || || || | || || || |
Sbjct 359783 CCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGAC 359842
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | ||||| ||||||||| ||| ||||| | | ||||| ||||| ||
Sbjct 359843 AGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGG 359902
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || | ||| | ||||| || ||||| | | |||||| | | |||||
Sbjct 359903 ATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGACC 359962
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||||| || || | || || |||||||||||||||||
Sbjct 359963 TCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCAT 360009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448206814785240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |