Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq6987 98.7 1e-15 seq11812 96.9 4e-15 seq11622 93.3 5e-14 seq9972 87.8 2e-12 seq9639 87.8 2e-12 seq9573 84.2 3e-11 >seq6987 Length=110619 Score = 98.7 bits (108), Expect = 1e-15 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 165220 GCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCGTG 165277 ||||| ||||||||||||||||||||||||| || |||| ||||||| || ||||| Sbjct 74659 GCCCAGGTGGCGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGACCGAAAGGTCGTG 74600 Query 165278 GAGGTTCAAGTCCTCTCTTGGGCACTAT 165305 ||||||| ||||||||| ||||||| || Sbjct 74599 GAGGTTCGAGTCCTCTCCTGGGCACCAT 74572 >seq11812 Length=28321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 165220 GCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCGTG 165277 ||||| ||||||||||||||||||||||||| || |||| |||||| |||| |||| Sbjct 13023 GCCCAGGTGGCGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGGCTTAACGGCCGTG 13082 Query 165278 GAGGTTCAAGTCCTCTCTTGGGCAC 165302 ||||||| ||||||||| ||||||| Sbjct 13083 GAGGTTCGAGTCCTCTCCTGGGCAC 13107 >seq11622 Length=276999 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 164825 GCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAAT 164884 |||||||||| ||||||||||| || ||| ||||||| ||| ||||||| ||||||||| Sbjct 87436 GCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGTTCAAAT 87495 Query 164885 CCCACTCCCGCTCCCATTT 164903 || |||||||| |||||| Sbjct 87496 CCAGCTCCCGCTACCATTT 87514 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 164825 GCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAAT 164884 |||||||||| ||||||||||| || ||| ||||||| ||| ||||||| ||||||||| Sbjct 87283 GCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGTTCAAAT 87342 Query 164885 CCCACTCCCGCTCCCATTTCAA 164906 || |||||||| ||| || || Sbjct 87343 CCAGCTCCCGCTACCAATTTAA 87364 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 164825 GCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAAT 164884 |||||||||| ||||||||||| || ||| ||||||| ||| ||| ||| ||||||||| Sbjct 87613 GCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGGCGTTGGTTCAAAT 87672 Query 164885 CCCACTCCCGCTCCCA--TTTCAAAA 164908 || |||||||| ||| |||| ||| Sbjct 87673 CCAGCTCCCGCTACCAAGTTTCTAAA 87698 >seq9972 Length=18252 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 165215 GAGTTGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTC 165274 |||| ||||| |||||||||||||||||||| || | || |||| | || | | || | Sbjct 2185 GAGTCGCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAAAACC 2126 Query 165275 GTGGAGGTTCAAGTCCTCTCTTGGGCACTAT 165305 |||||||||| ||||||||| ||||||| || Sbjct 2125 GTGGAGGTTCGAGTCCTCTCCTGGGCACCAT 2095 >seq9639 Length=103419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 165215 GAGTTGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTC 165274 ||| |||||| |||||||||||||||||||| || | || |||| | || | | | | | Sbjct 30095 GAGATGCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCC 30036 Query 165275 GTGGAGGTTCAAGTCCTCTCTTGGGCAC 165302 |||||||||| ||||||||| ||||||| Sbjct 30035 GTGGAGGTTCGAGTCCTCTCCTGGGCAC 30008 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 165215 GAGTTGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTC 165274 ||| |||||| |||||||||||||||||||| || | || |||| | || | | | | | Sbjct 30579 GAGATGCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCC 30520 Query 165275 GTGGAGGTTCAAGTCCTCTCTTGGGCAC 165302 |||||||||| ||||||||| ||||||| Sbjct 30519 GTGGAGGTTCGAGTCCTCTCCTGGGCAC 30492 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 165219 TGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGG 165278 |||||| |||||||||||||||||||| || | || |||| | || | | | | ||||| Sbjct 29611 TGCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCCGTGG 29552 Query 165279 AGGTTCAAGTCCTCTCTTGGGCAC 165302 |||||| ||||||||| ||||||| Sbjct 29551 AGGTTCGAGTCCTCTCCTGGGCAC 29528 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 165219 TGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGG 165278 |||||| |||||||||||||||||||| || | || |||| | || | | | | ||||| Sbjct 29852 TGCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCCGTGG 29793 Query 165279 AGGTTCAAGTCCTCTCTTGGGCAC 165302 |||||| ||||||||| ||||||| Sbjct 29792 AGGTTCGAGTCCTCTCCTGGGCAC 29769 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 165220 GCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGGA 165279 ||||| |||||||||||||||||||| || | || |||| | || | | | | |||||| Sbjct 30329 GCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCCGTGGA 30270 Query 165280 GGTTCAAGTCCTCTCTTGGGCAC 165302 ||||| ||||||||| ||||||| Sbjct 30269 GGTTCGAGTCCTCTCCTGGGCAC 30247 >seq9573 Length=73825 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 164825 GCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAAT 164884 |||||||||| ||||||||||| || ||| ||||||| ||| ||| ||| ||||||||| Sbjct 63672 GCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGGCGTTGGTTCAAAT 63731 Query 164885 CCCACTCCCGCTCCCATTTCAAAA 164908 || |||||||| ||| ||||| Sbjct 63732 CCAGCTCCCGCTACCAACGCAAAA 63755 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 164825 GCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAAT 164884 |||||||||| ||||||||||| || ||| ||||||| ||| |||||| ||||||||| Sbjct 69104 GCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGTGGTTCAAAT 69163 Query 164885 CCCACTCCCGCTCCCA 164900 || |||||||| ||| Sbjct 69164 CCAGCTCCCGCTACCA 69179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627849792873600