Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq6987 98.7 1e-15
seq11812 96.9 4e-15
seq11622 93.3 5e-14
seq9972 87.8 2e-12
seq9639 87.8 2e-12
seq9573 84.2 3e-11
>seq6987
Length=110619
Score = 98.7 bits (108), Expect = 1e-15
Identities = 75/88 (85%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 165220 GCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCGTG 165277
||||| ||||||||||||||||||||||||| || |||| ||||||| || |||||
Sbjct 74659 GCCCAGGTGGCGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGACCGAAAGGTCGTG 74600
Query 165278 GAGGTTCAAGTCCTCTCTTGGGCACTAT 165305
||||||| ||||||||| ||||||| ||
Sbjct 74599 GAGGTTCGAGTCCTCTCCTGGGCACCAT 74572
>seq11812
Length=28321
Score = 96.9 bits (106), Expect = 4e-15
Identities = 73/85 (86%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 165220 GCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCGTG 165277
||||| ||||||||||||||||||||||||| || |||| |||||| |||| ||||
Sbjct 13023 GCCCAGGTGGCGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGGCTTAACGGCCGTG 13082
Query 165278 GAGGTTCAAGTCCTCTCTTGGGCAC 165302
||||||| ||||||||| |||||||
Sbjct 13083 GAGGTTCGAGTCCTCTCCTGGGCAC 13107
>seq11622
Length=276999
Score = 93.3 bits (102), Expect = 5e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 164825 GCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAAT 164884
|||||||||| ||||||||||| || ||| ||||||| ||| ||||||| |||||||||
Sbjct 87436 GCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGTTCAAAT 87495
Query 164885 CCCACTCCCGCTCCCATTT 164903
|| |||||||| ||||||
Sbjct 87496 CCAGCTCCCGCTACCATTT 87514
Score = 89.7 bits (98), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 164825 GCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAAT 164884
|||||||||| ||||||||||| || ||| ||||||| ||| ||||||| |||||||||
Sbjct 87283 GCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGTTCAAAT 87342
Query 164885 CCCACTCCCGCTCCCATTTCAA 164906
|| |||||||| ||| || ||
Sbjct 87343 CCAGCTCCCGCTACCAATTTAA 87364
Score = 86.0 bits (94), Expect = 8e-12
Identities = 71/86 (83%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 164825 GCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAAT 164884
|||||||||| ||||||||||| || ||| ||||||| ||| ||| ||| |||||||||
Sbjct 87613 GCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGGCGTTGGTTCAAAT 87672
Query 164885 CCCACTCCCGCTCCCA--TTTCAAAA 164908
|| |||||||| ||| |||| |||
Sbjct 87673 CCAGCTCCCGCTACCAAGTTTCTAAA 87698
>seq9972
Length=18252
Score = 87.8 bits (96), Expect = 2e-12
Identities = 74/91 (81%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 165215 GAGTTGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTC 165274
|||| ||||| |||||||||||||||||||| || | || |||| | || | | || |
Sbjct 2185 GAGTCGCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAAAACC 2126
Query 165275 GTGGAGGTTCAAGTCCTCTCTTGGGCACTAT 165305
|||||||||| ||||||||| ||||||| ||
Sbjct 2125 GTGGAGGTTCGAGTCCTCTCCTGGGCACCAT 2095
>seq9639
Length=103419
Score = 87.8 bits (96), Expect = 2e-12
Identities = 72/88 (82%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 165215 GAGTTGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTC 165274
||| |||||| |||||||||||||||||||| || | || |||| | || | | | | |
Sbjct 30095 GAGATGCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCC 30036
Query 165275 GTGGAGGTTCAAGTCCTCTCTTGGGCAC 165302
|||||||||| ||||||||| |||||||
Sbjct 30035 GTGGAGGTTCGAGTCCTCTCCTGGGCAC 30008
Score = 87.8 bits (96), Expect = 2e-12
Identities = 72/88 (82%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 165215 GAGTTGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTC 165274
||| |||||| |||||||||||||||||||| || | || |||| | || | | | | |
Sbjct 30579 GAGATGCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCC 30520
Query 165275 GTGGAGGTTCAAGTCCTCTCTTGGGCAC 165302
|||||||||| ||||||||| |||||||
Sbjct 30519 GTGGAGGTTCGAGTCCTCTCCTGGGCAC 30492
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 165219 TGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGG 165278
|||||| |||||||||||||||||||| || | || |||| | || | | | | |||||
Sbjct 29611 TGCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCCGTGG 29552
Query 165279 AGGTTCAAGTCCTCTCTTGGGCAC 165302
|||||| ||||||||| |||||||
Sbjct 29551 AGGTTCGAGTCCTCTCCTGGGCAC 29528
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 165219 TGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGG 165278
|||||| |||||||||||||||||||| || | || |||| | || | | | | |||||
Sbjct 29852 TGCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCCGTGG 29793
Query 165279 AGGTTCAAGTCCTCTCTTGGGCAC 165302
|||||| ||||||||| |||||||
Sbjct 29792 AGGTTCGAGTCCTCTCCTGGGCAC 29769
Score = 82.4 bits (90), Expect = 1e-10
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 165220 GCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGGA 165279
||||| |||||||||||||||||||| || | || |||| | || | | | | ||||||
Sbjct 30329 GCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCCGTGGA 30270
Query 165280 GGTTCAAGTCCTCTCTTGGGCAC 165302
||||| ||||||||| |||||||
Sbjct 30269 GGTTCGAGTCCTCTCCTGGGCAC 30247
>seq9573
Length=73825
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 164825 GCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAAT 164884
|||||||||| ||||||||||| || ||| ||||||| ||| ||| ||| |||||||||
Sbjct 63672 GCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGGCGTTGGTTCAAAT 63731
Query 164885 CCCACTCCCGCTCCCATTTCAAAA 164908
|| |||||||| ||| |||||
Sbjct 63732 CCAGCTCCCGCTACCAACGCAAAA 63755
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 164825 GCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAAT 164884
|||||||||| ||||||||||| || ||| ||||||| ||| |||||| |||||||||
Sbjct 69104 GCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGTGGTTCAAAT 69163
Query 164885 CCCACTCCCGCTCCCA 164900
|| |||||||| |||
Sbjct 69164 CCAGCTCCCGCTACCA 69179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627849792873600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |