Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_006938.1 Length=63649 Score E Sequences producing significant alignments: (Bits) Value seq7053 134 6e-27 seq9538 105 3e-18 >seq7053 Length=464797 Score = 134 bits (148), Expect = 6e-27 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 7913 CGCTCCTGGTCGTTGACGAGTGTTCGATGGTCGACATGCAGGTCGGTCAAGACCTCCTCT 7972 ||||| | || | || || ||||||||||| ||| |||| |||| | || || | Sbjct 49948 CGCTCATCATCATCGATGAATGTTCGATGGTGGACGAGCAGCTCGGCAAGGATCTGATGA 49889 Query 7973 CCTTCGACGTCCCCATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAG 8032 ||||| | |||||||||||||||||||| || | ||||| ||||| || ||| | Sbjct 49888 GCTTCGGCACGCCCATCCTCGTGCTCGGCGATCCCGGACAGCTGCCGCCGGTTTCGGGCG 49829 Query 8033 GTGGCTTCTTCACGGAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCA 8092 | ||||||||||||||| ||||||| ||||| |||| ||||| || ||||||| Sbjct 49828 GCGGCTTCTTCACGGAGCAGGAGCCGGATTACCTGCTGTCGGAAATCCATCGGCAGGCCA 49769 Query 8093 AGGACAACCCCATCATC 8109 ||||||| ||||||||| Sbjct 49768 AGGACAATCCCATCATC 49752 >seq9538 Length=646221 Score = 105 bits (116), Expect = 3e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 7927 GACGAGTGTTCGATGGTCGACATGCAGGTCGGTCAAGACCTCCTCTCCTTCGACGTCCCC 7986 ||||| || |||||||| ||| ||| | || | || || || || |||| | ||| Sbjct 517989 GACGAATGCTCGATGGTGGACGAACAGCTGGGGCGCGATCTGCTGTCTTTCGGCACGCCC 518048 Query 7987 ATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAGGTGGCTTCTTCACG 8046 | | ||||| ||||||||||||||||| ||||| || || || ||||||||||| Sbjct 518049 GTTTTGGTGCTGGGCGACCCGGCCCAGCTGCCGCCGATCTCCGGTGGCGGCTTCTTCACC 518108 Query 8047 GAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCAAGGACAACCCCATC 8106 ||| | ||||||| |||| || || ||||| |||||||| |||||||| ||| Sbjct 518109 GAGCACGAGCCGGATTATCTGCTCACCGAGATCCATCGCCAGGCGCGCGACAACCCGATC 518168 Query 8107 ATCGAGATGGC 8117 ||| | |||| Sbjct 518169 ATCAGGCTGGC 518179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203514641783390