Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_006938.1
Length=63649
Score E
Sequences producing significant alignments: (Bits) Value
seq7053 134 6e-27
seq9538 105 3e-18
>seq7053
Length=464797
Score = 134 bits (148), Expect = 6e-27
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 7913 CGCTCCTGGTCGTTGACGAGTGTTCGATGGTCGACATGCAGGTCGGTCAAGACCTCCTCT 7972
||||| | || | || || ||||||||||| ||| |||| |||| | || || |
Sbjct 49948 CGCTCATCATCATCGATGAATGTTCGATGGTGGACGAGCAGCTCGGCAAGGATCTGATGA 49889
Query 7973 CCTTCGACGTCCCCATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAG 8032
||||| | |||||||||||||||||||| || | ||||| ||||| || ||| |
Sbjct 49888 GCTTCGGCACGCCCATCCTCGTGCTCGGCGATCCCGGACAGCTGCCGCCGGTTTCGGGCG 49829
Query 8033 GTGGCTTCTTCACGGAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCA 8092
| ||||||||||||||| ||||||| ||||| |||| ||||| || |||||||
Sbjct 49828 GCGGCTTCTTCACGGAGCAGGAGCCGGATTACCTGCTGTCGGAAATCCATCGGCAGGCCA 49769
Query 8093 AGGACAACCCCATCATC 8109
||||||| |||||||||
Sbjct 49768 AGGACAATCCCATCATC 49752
>seq9538
Length=646221
Score = 105 bits (116), Expect = 3e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 7927 GACGAGTGTTCGATGGTCGACATGCAGGTCGGTCAAGACCTCCTCTCCTTCGACGTCCCC 7986
||||| || |||||||| ||| ||| | || | || || || || |||| | |||
Sbjct 517989 GACGAATGCTCGATGGTGGACGAACAGCTGGGGCGCGATCTGCTGTCTTTCGGCACGCCC 518048
Query 7987 ATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAGGTGGCTTCTTCACG 8046
| | ||||| ||||||||||||||||| ||||| || || || |||||||||||
Sbjct 518049 GTTTTGGTGCTGGGCGACCCGGCCCAGCTGCCGCCGATCTCCGGTGGCGGCTTCTTCACC 518108
Query 8047 GAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCAAGGACAACCCCATC 8106
||| | ||||||| |||| || || ||||| |||||||| |||||||| |||
Sbjct 518109 GAGCACGAGCCGGATTATCTGCTCACCGAGATCCATCGCCAGGCGCGCGACAACCCGATC 518168
Query 8107 ATCGAGATGGC 8117
||| | ||||
Sbjct 518169 ATCAGGCTGGC 518179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 203514641783390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |