Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq8995 280 2e-70 seq6579 111 2e-19 seq608 96.9 4e-15 >seq8995 Length=8301158 Score = 280 bits (310), Expect = 2e-70 Identities = 599/895 (67%), Gaps = 4/895 (0%) Strand=Plus/Plus Query 21167 tttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTT 21226 |||||||| | ||||||| | |||| || || ||||| || || || || || ||||| Sbjct 6971356 TTTGACATCACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTC 6971415 Query 21227 CCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTA 21286 || |||| ||| ||| ||||||||| ||||| |||||||| ||| || | || || Sbjct 6971416 CCCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTA 6971475 Query 21287 CAACCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTC 21345 | ||||| || | |||| ||||||||| || || || || || || ||| || Sbjct 6971476 AAGCCCAGCTCC-AGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGT 6971534 Query 21346 ACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGA 21405 |||||||| || || | || ||||| || || | || | || | |||||| Sbjct 6971535 GCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCT 6971594 Query 21406 GACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTT 21465 || || | || ||||| | ||| || | | ||| | ||| | ||||| Sbjct 6971595 AACTGCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTT 6971654 Query 21466 AAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGA 21525 ||||||| || | ||| ||||| |||||||| ||||| || || || | |||||| || Sbjct 6971655 GAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGA 6971714 Query 21526 AAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCC 21585 ||| || | || ||||| | ||||| || || | ||| ||||| |||||||| | || Sbjct 6971715 AAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACC 6971774 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 |||||||| ||||| || || |||||||| || || | ||||| || ||||||| ||| Sbjct 6971775 GGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTC 6971834 Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATC 21705 ||| ||| |||| ||||| | |||||| | || | |||| || || || Sbjct 6971835 TTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTC 6971894 Query 21706 AATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNN 21765 ||| || || || ||| | |||| | ||| | ||| Sbjct 6971895 AATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAG 6971954 Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||||||||||||||||||| ||||| || || || || || || || ||||| || Sbjct 6971955 ACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGC 6972014 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 ||| | | ||||| || ||| || | ||||||||||||||||||| ||||| Sbjct 6972015 CTCGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATC 6972074 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 ||| || ||||| || |||| | || |||||||||| || | | | | Sbjct 6972075 ACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGC 6972134 Query 21946 TTTCCAAT-CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004 || ||| | || | | || || || | || || || |||| |||||||||| ||| Sbjct 6972135 TTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCT 6972193 Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 ||| || |||||||| ||| ||||||| ||| || ||||| || ||||| Sbjct 6972194 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248 >seq6579 Length=1767599 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715 || || |||||||||| | | |||| ||||||| ||||||||| |||| | | Sbjct 87904 TCCTCCTCCGTTTCAAACTGAGCAAGGACAGCTCCCAGTGAAGTACAGGATGTCTGACTG 87845 Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 ||||||||||||||||| ||||||||||| ||||| || ||| |||||||||||||| Sbjct 87844 AATGTCCAATTTTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCAC 87785 Query 130776 CCCTTTGGGCAAGT 130789 || | |||||| || Sbjct 87784 CCTTCTGGGCAGGT 87771 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || |||||||||| | | ||||| ||| ||| | |||||| |||| | Sbjct 399057 AGCTCCTCCTCCGTTTCAAACTGAGCAAGAACAGCTTCCATTTTAGTACAGGATGTCTGA 399116 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||||| ||||||||||| ||||| || ||| |||||||||||| Sbjct 399117 CTGAATGTCCAATTCTTTGATTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATC 399176 Query 130773 CATCCCTTTGGGCAAGTAACATAT 130796 ||||| | |||||| || |||||| Sbjct 399177 CATCCTTCTGGGCAGGTGACATAT 399200 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130663 CCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCC 130722 ||||||||| | | ||||| ||| || | |||||| |||| | | ||||||| Sbjct 461765 CCGTTTCAAACTGAGCAAGAACAGCTTCCGTTTTAGTACAGGATGTCTGACTGAATGTCC 461824 Query 130723 AATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTG 130782 |||| ||||| ||||||||||| ||||| || ||| ||||||||||||||||| | || Sbjct 461825 AATTCTTTGATTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCATCCTTCTG 461884 Query 130783 GGCAAGTAACATA 130795 |||| || ||||| Sbjct 461885 GGCAGGTGACATA 461897 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | |||| ||| ||||||||||||| ||||| | | |||||||| Sbjct 504691 GTTTCAAACTGAGCAAGGACAGCTTCCAATGAAGTACAGAATGTCTGACTGAATGTCCAG 504750 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||| ||||| ||||| ||||| |||||| ||||||||| |||||||| ||| | Sbjct 504751 TTCCTTGTGTCTTCCGAAAAATAAAAACATTTACTTCCAAATCCTATCCATCCTTTTAAG 504810 Query 130785 CAAGTAACAT 130794 || | ||||| Sbjct 504811 CAGGGAACAT 504820 >seq608 Length=3558542 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | | Sbjct 2099025 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 2098966 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 2098965 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 2098906 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 2098905 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 2098875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531800676323160