Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 280 2e-70
seq6579 111 2e-19
seq608 96.9 4e-15
>seq8995
Length=8301158
Score = 280 bits (310), Expect = 2e-70
Identities = 599/895 (67%), Gaps = 4/895 (0%)
Strand=Plus/Plus
Query 21167 tttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTT 21226
|||||||| | ||||||| | |||| || || ||||| || || || || || |||||
Sbjct 6971356 TTTGACATCACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTC 6971415
Query 21227 CCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTA 21286
|| |||| ||| ||| ||||||||| ||||| |||||||| ||| || | || ||
Sbjct 6971416 CCCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTA 6971475
Query 21287 CAACCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTC 21345
| ||||| || | |||| ||||||||| || || || || || || ||| ||
Sbjct 6971476 AAGCCCAGCTCC-AGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGT 6971534
Query 21346 ACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGA 21405
|||||||| || || | || ||||| || || | || | || | ||||||
Sbjct 6971535 GCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCT 6971594
Query 21406 GACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTT 21465
|| || | || ||||| | ||| || | | ||| | ||| | |||||
Sbjct 6971595 AACTGCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTT 6971654
Query 21466 AAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGA 21525
||||||| || | ||| ||||| |||||||| ||||| || || || | |||||| ||
Sbjct 6971655 GAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGA 6971714
Query 21526 AAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCC 21585
||| || | || ||||| | ||||| || || | ||| ||||| |||||||| | ||
Sbjct 6971715 AAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACC 6971774
Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645
|||||||| ||||| || || |||||||| || || | ||||| || ||||||| |||
Sbjct 6971775 GGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTC 6971834
Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATC 21705
||| ||| |||| ||||| | |||||| | || | |||| || || ||
Sbjct 6971835 TTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTC 6971894
Query 21706 AATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNN 21765
||| || || || ||| | |||| | ||| | |||
Sbjct 6971895 AATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAG 6971954
Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825
||||||||||||||||||||| ||||| || || || || || || || ||||| ||
Sbjct 6971955 ACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGC 6972014
Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
||| | | ||||| || ||| || | ||||||||||||||||||| |||||
Sbjct 6972015 CTCGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATC 6972074
Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945
||| || ||||| || |||| | || |||||||||| || | | | |
Sbjct 6972075 ACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGC 6972134
Query 21946 TTTCCAAT-CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004
|| ||| | || | | || || || | || || || |||| |||||||||| |||
Sbjct 6972135 TTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCT 6972193
Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059
||| || |||||||| ||| ||||||| ||| || ||||| || |||||
Sbjct 6972194 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 6972248
>seq6579
Length=1767599
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715
|| || |||||||||| | | |||| ||||||| ||||||||| |||| | |
Sbjct 87904 TCCTCCTCCGTTTCAAACTGAGCAAGGACAGCTCCCAGTGAAGTACAGGATGTCTGACTG 87845
Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775
||||||||||||||||| ||||||||||| ||||| || ||| ||||||||||||||
Sbjct 87844 AATGTCCAATTTTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCAC 87785
Query 130776 CCCTTTGGGCAAGT 130789
|| | |||||| ||
Sbjct 87784 CCTTCTGGGCAGGT 87771
Score = 111 bits (122), Expect = 2e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712
|| || || |||||||||| | | ||||| ||| ||| | |||||| |||| |
Sbjct 399057 AGCTCCTCCTCCGTTTCAAACTGAGCAAGAACAGCTTCCATTTTAGTACAGGATGTCTGA 399116
Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772
| ||||||||||| ||||| ||||||||||| ||||| || ||| ||||||||||||
Sbjct 399117 CTGAATGTCCAATTCTTTGATTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATC 399176
Query 130773 CATCCCTTTGGGCAAGTAACATAT 130796
||||| | |||||| || ||||||
Sbjct 399177 CATCCTTCTGGGCAGGTGACATAT 399200
Score = 100 bits (110), Expect = 3e-16
Identities = 102/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 130663 CCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCC 130722
||||||||| | | ||||| ||| || | |||||| |||| | | |||||||
Sbjct 461765 CCGTTTCAAACTGAGCAAGAACAGCTTCCGTTTTAGTACAGGATGTCTGACTGAATGTCC 461824
Query 130723 AATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTG 130782
|||| ||||| ||||||||||| ||||| || ||| ||||||||||||||||| | ||
Sbjct 461825 AATTCTTTGATTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCATCCTTCTG 461884
Query 130783 GGCAAGTAACATA 130795
|||| || |||||
Sbjct 461885 GGCAGGTGACATA 461897
Score = 95.1 bits (104), Expect = 1e-14
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724
||||||| | | |||| ||| ||||||||||||| ||||| | | ||||||||
Sbjct 504691 GTTTCAAACTGAGCAAGGACAGCTTCCAATGAAGTACAGAATGTCTGACTGAATGTCCAG 504750
Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784
|| ||| ||||| ||||| ||||| |||||| ||||||||| |||||||| ||| |
Sbjct 504751 TTCCTTGTGTCTTCCGAAAAATAAAAACATTTACTTCCAAATCCTATCCATCCTTTTAAG 504810
Query 130785 CAAGTAACAT 130794
|| | |||||
Sbjct 504811 CAGGGAACAT 504820
>seq608
Length=3558542
Score = 96.9 bits (106), Expect = 4e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | |
Sbjct 2099025 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 2098966
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| || ||||| ||| || || |||||||| || || || || || || ||
Sbjct 2098965 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 2098906
Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276
||||||||||||| |||||||| | || |||
Sbjct 2098905 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 2098875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531800676323160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |