Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8995 444 7e-120 seq13960 140 4e-28 seq7661 123 3e-23 seq608 107 2e-18 seq11415 91.5 2e-13 seq12849 89.7 6e-13 >seq8995 Length=8301158 Score = 444 bits (492), Expect = 7e-120 Identities = 659/933 (71%), Gaps = 6/933 (1%) Strand=Plus/Plus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 33014 ||| ||||| |||| || | ||| ||| ||| | || ||||| ||||||||| | Sbjct 6971316 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGATTTGACATCACTCCCATTCT 6971375 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || | || | || | || || || || ||||| || || |||| ||| |||||||| Sbjct 6971376 CTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6971435 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 ||| || ||||||||||| || || ||| || |||| |||| || || | Sbjct 6971436 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAG 6971495 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 |||||| || ||||| || || || ||||||| |||||||| || || || || Sbjct 6971496 TCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 6971555 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 || || || ||| | ||||| || || ||||| || || |||| || || Sbjct 6971556 CACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 6971615 Query 33255 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 33314 | || | | || ||| ||||| | ||||| ||||||| || | || || Sbjct 6971616 CTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTC 6971675 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 ||||||| |||||| ||||| ||||| ||||| |||||||||||||| || ||||| || Sbjct 6971676 ACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 6971735 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 || || || || ||||| ||||| || || || || || ||||||||||| ||||| || Sbjct 6971736 TCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 6971795 Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTG 33491 |||||||||||| | | | |||||||| | | | |||| |||| Sbjct 6971796 TGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAA 6971855 Query 33492 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551 |||||||| |||||||| || |||||||||||||| || |||||||| |||||| | | Sbjct 6971856 GGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATTC 6971915 Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611 |||| || |||||||| ||||| || || | |||||||||||||| ||||| || Sbjct 6971916 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTAT 6971975 Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671 |||||| ||||| || || || || |||||||| ||||||||||||||| |||||| Sbjct 6971976 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTG 6972035 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 | ||| || ||| |||| |||||||| ||||| || ||||| |||||||| || |||| Sbjct 6972036 GCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 6972095 Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791 ||||| ||||||||| | || || || | || | ||| | | || || || Sbjct 6972096 CACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 6972155 Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 || | || || || || |||||||||| || ||||| || || |||||||| | ||| Sbjct 6972156 GGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCA 6972215 Query 33852 GATGTCATAATATTGGATTGGGAAAATAACAAA 33884 || |||| |||| ||| || || || ||||| Sbjct 6972216 AATATCATGGTATTCGATAGGAAAGATGACAAA 6972248 Score = 255 bits (282), Expect = 7e-63 Identities = 388/552 (70%), Gaps = 3/552 (1%) Strand=Plus/Plus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| ||||||||| | || || || || || | || || || || ||||| || || Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 33117 |||| ||| ||||||||||| || ||||||||||| || || ||| || |||| Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610 Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177 |||| || || | |||||| || ||||| || || || ||||||| ||| Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670 Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237 ||||| || || || || || || || ||| | ||||| || || ||||| || || Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730 Query 33238 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 33297 |||| || || | || | | || ||| ||||| | ||||| ||| Sbjct 6968731 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAAC 6968790 Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 |||| || | || || ||||||| |||||| ||||| ||||| ||||| ||||||||| Sbjct 6968791 ATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 6968850 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 ||||| || ||||| || || || || || ||||| ||||| || || || || || ||| Sbjct 6968851 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAA 6968910 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTG 33474 |||||||| ||||| |||||||||||||| | | | |||||||| | | | || Sbjct 6968911 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 6968970 Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 || |||| |||||||| |||||||| || |||||||||||||| || ||| Sbjct 6968971 TCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATG 6969030 Query 33535 GCATTAAAGAGA 33546 ||||| |||||| Sbjct 6969031 GCATTGAAGAGA 6969042 >seq13960 Length=3940437 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 2049915 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2049974 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 2049975 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2050034 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 2050035 CTGTTTCTTATACCATA 2050051 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| |||| ||| || ||||| ||||| | || || ||||| || || || || || | Sbjct 2074044 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2074103 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||||||||| || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 2074104 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2074163 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 2074164 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2074209 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || | ||||| || || || || || || | Sbjct 2054701 CATAGGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 2054760 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 2054761 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 2054820 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 2054821 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 2054880 Query 62755 TCTTATTAGA 62764 ||||| || Sbjct 2054881 GTTTATTCGA 2054890 >seq7661 Length=1898141 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||||||||| || ||||| || || || || | Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || ||||||||||| ||||| ||||||||||||| Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480 Query 33446 C 33446 | Sbjct 818479 C 818479 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| |||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 816929 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 816870 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| ||||||||||||||| |||||| | ||| || || Sbjct 816869 AATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTGGCTAAACCGCTC 816810 Query 33684 CGCC 33687 | || Sbjct 816809 CACC 816806 >seq608 Length=3558542 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || || || |||||||| |||||||| ||||| || || | || || Sbjct 2088600 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 2088541 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 2088540 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 2088482 >seq11415 Length=1221423 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 31099 ACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCA 31158 ||||| || | |||||| ||| |||| ||| | | || ||||| || |||| ||| || Sbjct 353737 ACTTCCTCTATTTCTGGGTAAAATATCCGTGCACAAATGAGCTGTGCAATTCGATCACCC 353678 Query 31159 GTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTA 31218 | || || | ||| | ||| ||| ||||| || | || || | ||||| ||| Sbjct 353677 TTTTTGACTTCCAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTA 353618 Query 31219 TAATCTTCGTCTATTACACCGCCTCCTATATCAATGCCTTTTAGGGACAGACCAGACCTA 31278 |||||||| ||||| ||||| |||||| ||| ||| | || | || ||||| | | Sbjct 353617 TAATCTTCATCTATGACACCAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGA 353559 Query 31279 GGAGCTATTCTACCATAGCA 31298 ||||| | ||| |||||||| Sbjct 353558 GGAGCCACTCTTCCATAGCA 353539 >seq12849 Length=3269951 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/254 (69%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||||| | || ||||| Sbjct 3072264 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAATTTAAACTTCC 3072207 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||| ||| |||| | || | | || ||||| || ||| ||| || | || Sbjct 3072206 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTG 3072147 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | |||| | ||| ||| ||||| || | || || | ||||| ||||||||| Sbjct 3072146 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 3072087 Query 31225 TCGTCTATTACACCGCCTCCTATATCAATGCCTTTTAGGGACAGACCAGACCTAGGAGCT 31284 || ||||| |||| |||||| ||| ||| | || | || ||||| | |||||| Sbjct 3072086 TCATCTATGACACAAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCC 3072028 Query 31285 ATTCTACCATAGCA 31298 | ||| |||||||| Sbjct 3072027 ACTCTTCCATAGCA 3072014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622829937976440