Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_007022.1
Length=172963
Score E
Sequences producing significant alignments: (Bits) Value
seq8257 147 2e-30
seq14417 109 6e-19
seq11094 105 7e-18
seq8050 98.7 1e-15
seq11622 93.3 5e-14
seq9639 91.5 2e-13
seq10996 86.0 7e-12
seq8280 84.2 2e-11
>seq8257
Length=88174
Score = 147 bits (162), Expect = 2e-30
Identities = 215/304 (71%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 6918 CTTTATGCCCATGTGTTAAATGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGC 6977
||||| ||||| || ||||||||||| |||| ||| | || || | ||| |
Sbjct 80426 CTTTAGCACCATGAGTCAAATGACCACCATGCGCCAAGCTCATGCCTAAAACAGTATCAC 80485
Query 6978 CTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAA 7037
|||| | || || ||| | ||||| ||| |||||| || ||||| | ||| |||||||
Sbjct 80486 CTGGGTTAAGTAAAGCAAGATAAACTGCTGAGTTTGCTTGAGAACCTGCATGTGGTTGAA 80545
Query 7038 CGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCT 7097
| ||||| | | || ||| | | |||||||||| || || |||| | ||||||
Sbjct 80546 CATTTGCATAGTCAGCACCAAATAATGCTTTAGCACGATCGATCGCCAATTGTTCGATCA 80605
Query 7098 CATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGT 7157
|||| | | | |||||||||| ||||| || ||||| || || || || ||||| ||||
Sbjct 80606 CATCAACATATTCACAACCGCCATAATAGCGCTTGCCAGGGTAACCTTCCGCATATTTGT 80665
Query 7158 TGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGATGCAA 7217
| || | | || ||||| |||| ||||||| | || ||||||||| ||||| |
Sbjct 80666 TAGTGAGTTTTGACCCTTGTGCTTCCATAACAGCTGGTGAGCAATAGTTTTCAGATGCGA 80725
Query 7218 TCAA 7221
| ||
Sbjct 80726 TTAA 80729
>seq14417
Length=43923
Score = 109 bits (120), Expect = 6e-19
Identities = 156/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 7001 ACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCAACTAAAC 7060
|| || ||||| ||||| || || || || || ||||| || ||||| | | ||
Sbjct 8304 ACCGCCTGGTTGGCCTGCGAGCCCGAGTGCGGCTGAACATTGGCGAAGCCGGCGCCGAAT 8363
Query 7061 AGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGCCG 7120
|| | || || || ||||| || | | | |||||||||||| | | | | |||||||||
Sbjct 8364 AGCGCCTTGGCGCGTTCAATGGCGATGGTTTCGATCTCATCGACATATTCGCAACCGCCG 8423
Query 7121 TAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTTGCGCT 7180
||||| || ||||| ||||| ||||| || ||||||||||| | || || || || ||
Sbjct 8424 TAATAGCGCTTGCCGGGATAGCCCTCGGCGTACTTGTTGGTCAGGATCGAGCCCTGAGCC 8483
Query 7181 TTCATAACATCATCGGACACATAGTTTTCGGATGCAATCA 7220
| || ||| | | ||| || ||| || || || ||||
Sbjct 8484 TGCAGAACGGCCTTGGAGACGATGTTCTCCGAGGCGATCA 8523
>seq11094
Length=11887
Score = 105 bits (116), Expect = 7e-18
Identities = 172/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 6974 TCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGT 7033
||||| || ||| ||||| |||| || | ||||| ||||| || || || ||
Sbjct 1896 TCGCCGGGCTCCAGGAACGCCAGGTACACGCCCTGGTTGGCCTGGCTGCCCGAGTGCGGC 1955
Query 7034 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7093
|| ||||| ||| ||| | ||||| | || |||||| |||| |||||||||||
Sbjct 1956 TGCACGTTGGCGCGCGCGCAGCCGAACAGCGCCTTGGCACGCGCAATGGCCAGGTTCTCC 2015
Query 7094 ATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATAC 7153
| ||||||| || | || |||||||| || || ||| ||||| ||||| || ||
Sbjct 2016 ACGGCATCGGCATTGGCGCAGCCGCCGTAGTAGCGCACGCCGGGATAGCCCTCGGCGTAT 2075
Query 7154 TTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGAT 7213
|||||||| | | || || ||||| | ||| || | | ||| ||||||| ||
Sbjct 2076 TTGTTGGTCAGCACCGAGCCCTGCGCCTCCATCACCGCGCGGCTCACGAAGTTTTCAGAG 2135
Query 7214 GCAATCAA 7221
||||||||
Sbjct 2136 GCAATCAA 2143
>seq8050
Length=287393
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 6460 CGGTTGAAGAGCTTCACCGAAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACC 6519
||| || || |||||||||||| || ||||| || ||||| |||||||| ||||| ||
Sbjct 186965 CGGCTGCAGCGCTTCACCGAAGGCAACGGCCTTGGCGGCGATGACATGCATCAACGGGCC 186906
Query 6520 ACCCTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGT 6579
||||| | || ||||| | || ||||| | |||||||| | ||| | || || ||
Sbjct 186905 GCCCTGCAGGCCGGGGAATACGGCCGAATTGAACTTCTTGGCCAGATCCTCTTCATTGGT 186846
Query 6580 AAGAATGAGACCACCACGAGGGCCGCGCA 6608
|| || | || ||||| ||||||||||
Sbjct 186845 GAGGATCATGCCGCCACGCGGGCCGCGCA 186817
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 6973 ATCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGG 7032
|||||| || ||||| ||| || | || || ||||| ||| |||||||||| ||
Sbjct 186464 ATCGCCCGGCTGCAGCAGCGCGAGGAACACGGCCTGGTTCATCTGCGAACCGGAATTCGG 186405
Query 7033 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT- 7091
|| ||||| ||||| ||| | ||||| | || || ||||| || || || ||||
Sbjct 186404 CTGGACGTTGGCGAAGTTGACGCCGAACAGCTTCTTGGCGCGCTCGATGGCGAG-TTCTT 186346
Query 7092 ---CGATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAG 7148
|||| || || | || ||||||||||| || ||||| ||||| || || |
Sbjct 186345 CAGCGATGTCGACGAACTGG---CAGCCGCCGTAATAACGCTTGCCCGGATAACCTTCCG 186289
Query 7149 CATACTTGTTGGTAAAAATAGAACCTTGCGCTT 7181
|||| |||||||| | || ||||| |||||||
Sbjct 186288 CATATTTGTTGGTCATGATCGAACCCTGCGCTT 186256
>seq11622
Length=276999
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 54787 AAGCAGGAATCGCGATCGCAGCGAGTATAGCAATAATCACAACAACGATCATAAGTTCGA 54846
||||||||||||| |||||||| || ||| |||||||| ||||||||||||| | |||||
Sbjct 96036 AAGCAGGAATCGCAATCGCAGCAAGGATACCAATAATCGCAACAACGATCATTAATTCGA 95977
Query 54847 TCAGTGTAAAACCTTT 54862
| || |||||||| ||
Sbjct 95976 TAAGAGTAAAACCCTT 95961
>seq9639
Length=103419
Score = 91.5 bits (100), Expect = 2e-13
Identities = 119/162 (73%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 7001 ACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCAACTAAAC 7060
|| || ||||| ||||| || ||||| | ||| |||||||| || | | | |||
Sbjct 20349 ACGGCCTGGTTGGCCTGGGAGCCGGAGTTGGGCTGAACGTTGGCTGCCTCGGCGCCGAAC 20408
Query 7061 AG-TTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGCC 7119
|| ||||| | |||| || || || || | ||||| | | ||| | ||| | || |||||
Sbjct 20409 AGCTTCTTGA-CACGGTCGATGGCAAGCTGCTCGACCACGTCGACGTTTTCGCAGCCGCC 20467
Query 7120 GTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGT 7161
||| || || ||||||||||| || || || |||||||||||
Sbjct 20468 GTAGTAGCGCTTGCCTGGATAGCCTTCTGCGTACTTGTTGGT 20509
>seq10996
Length=378002
Score = 86.0 bits (94), Expect = 7e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 6488 GCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGAATACCCGGGAAGATAGCAGAA 6547
||||| || ||||| |||||||| | ||| || ||||| | || ||||| | || |||
Sbjct 202679 GCCTTGGCGGCGATGACATGCATCAGCGGTCCGCCCTGCAGGCCGGGGAACACCGCCGAA 202738
Query 6548 TTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGACCACCACGAGGGCCGCGC 6607
|| || ||||||| ||| || | ||||| || || | | || || || |||||||||
Sbjct 202739 TTGACCTTCTTGGAGATCTCCTCGTCGTTGGTGAGCACCATGCCGCCGCGCGGGCCGCGC 202798
Query 6608 AAAGTTTTATGAGTTGT 6624
|| ||||| || || ||
Sbjct 202799 AAGGTTTTGTGGGTGGT 202815
>seq8280
Length=144189
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 6974 TCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGT 7033
||||| || ||||| ||| | | || || ||||| ||||| | || || || ||
Sbjct 53853 TCGCCCGGCTGCAGCAGCGCCATGAACACCGCCTGGTTGGCCTGGGCGCCCGAGTGCGGC 53912
Query 7034 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7093
|| ||||| ||||| | ||||| | || || ||||| || ||||||||||||
Sbjct 53913 TGGACGTTGGCGAAGCCGGCCTCGAACAGCTGCTTGGCCCGCTCGATGGCCAGGTTCTCG 53972
Query 7094 ATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATAC 7153
| | ||| | | | | || ||||| || || || ||| ||||| ||||| || |||
Sbjct 53973 ACGACGTCGACATATTCGCAGCCGCCATAGTAGCGACGGCCCGGATAGCCCTCGGCGTAC 54032
Query 7154 TTGTTGGTAAAAATAGAACCTTGCGC 7179
|||||||| | || ||||| || ||
Sbjct 54033 TTGTTGGTCAGGATCGAACCCTGGGC 54058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553249438101720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |