Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq8257 147 2e-30 seq14417 109 6e-19 seq11094 105 7e-18 seq8050 98.7 1e-15 seq11622 93.3 5e-14 seq9639 91.5 2e-13 seq10996 86.0 7e-12 seq8280 84.2 2e-11 >seq8257 Length=88174 Score = 147 bits (162), Expect = 2e-30 Identities = 215/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 6918 CTTTATGCCCATGTGTTAAATGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGC 6977 ||||| ||||| || ||||||||||| |||| ||| | || || | ||| | Sbjct 80426 CTTTAGCACCATGAGTCAAATGACCACCATGCGCCAAGCTCATGCCTAAAACAGTATCAC 80485 Query 6978 CTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAA 7037 |||| | || || ||| | ||||| ||| |||||| || ||||| | ||| ||||||| Sbjct 80486 CTGGGTTAAGTAAAGCAAGATAAACTGCTGAGTTTGCTTGAGAACCTGCATGTGGTTGAA 80545 Query 7038 CGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCT 7097 | ||||| | | || ||| | | |||||||||| || || |||| | |||||| Sbjct 80546 CATTTGCATAGTCAGCACCAAATAATGCTTTAGCACGATCGATCGCCAATTGTTCGATCA 80605 Query 7098 CATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGT 7157 |||| | | | |||||||||| ||||| || ||||| || || || || ||||| |||| Sbjct 80606 CATCAACATATTCACAACCGCCATAATAGCGCTTGCCAGGGTAACCTTCCGCATATTTGT 80665 Query 7158 TGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGATGCAA 7217 | || | | || ||||| |||| ||||||| | || ||||||||| ||||| | Sbjct 80666 TAGTGAGTTTTGACCCTTGTGCTTCCATAACAGCTGGTGAGCAATAGTTTTCAGATGCGA 80725 Query 7218 TCAA 7221 | || Sbjct 80726 TTAA 80729 >seq14417 Length=43923 Score = 109 bits (120), Expect = 6e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 7001 ACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCAACTAAAC 7060 || || ||||| ||||| || || || || || ||||| || ||||| | | || Sbjct 8304 ACCGCCTGGTTGGCCTGCGAGCCCGAGTGCGGCTGAACATTGGCGAAGCCGGCGCCGAAT 8363 Query 7061 AGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGCCG 7120 || | || || || ||||| || | | | |||||||||||| | | | | ||||||||| Sbjct 8364 AGCGCCTTGGCGCGTTCAATGGCGATGGTTTCGATCTCATCGACATATTCGCAACCGCCG 8423 Query 7121 TAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTTGCGCT 7180 ||||| || ||||| ||||| ||||| || ||||||||||| | || || || || || Sbjct 8424 TAATAGCGCTTGCCGGGATAGCCCTCGGCGTACTTGTTGGTCAGGATCGAGCCCTGAGCC 8483 Query 7181 TTCATAACATCATCGGACACATAGTTTTCGGATGCAATCA 7220 | || ||| | | ||| || ||| || || || |||| Sbjct 8484 TGCAGAACGGCCTTGGAGACGATGTTCTCCGAGGCGATCA 8523 >seq11094 Length=11887 Score = 105 bits (116), Expect = 7e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 6974 TCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGT 7033 ||||| || ||| ||||| |||| || | ||||| ||||| || || || || Sbjct 1896 TCGCCGGGCTCCAGGAACGCCAGGTACACGCCCTGGTTGGCCTGGCTGCCCGAGTGCGGC 1955 Query 7034 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7093 || ||||| ||| ||| | ||||| | || |||||| |||| ||||||||||| Sbjct 1956 TGCACGTTGGCGCGCGCGCAGCCGAACAGCGCCTTGGCACGCGCAATGGCCAGGTTCTCC 2015 Query 7094 ATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATAC 7153 | ||||||| || | || |||||||| || || ||| ||||| ||||| || || Sbjct 2016 ACGGCATCGGCATTGGCGCAGCCGCCGTAGTAGCGCACGCCGGGATAGCCCTCGGCGTAT 2075 Query 7154 TTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGAT 7213 |||||||| | | || || ||||| | ||| || | | ||| ||||||| || Sbjct 2076 TTGTTGGTCAGCACCGAGCCCTGCGCCTCCATCACCGCGCGGCTCACGAAGTTTTCAGAG 2135 Query 7214 GCAATCAA 7221 |||||||| Sbjct 2136 GCAATCAA 2143 >seq8050 Length=287393 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 6460 CGGTTGAAGAGCTTCACCGAAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACC 6519 ||| || || |||||||||||| || ||||| || ||||| |||||||| ||||| || Sbjct 186965 CGGCTGCAGCGCTTCACCGAAGGCAACGGCCTTGGCGGCGATGACATGCATCAACGGGCC 186906 Query 6520 ACCCTGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGT 6579 ||||| | || ||||| | || ||||| | |||||||| | ||| | || || || Sbjct 186905 GCCCTGCAGGCCGGGGAATACGGCCGAATTGAACTTCTTGGCCAGATCCTCTTCATTGGT 186846 Query 6580 AAGAATGAGACCACCACGAGGGCCGCGCA 6608 || || | || ||||| |||||||||| Sbjct 186845 GAGGATCATGCCGCCACGCGGGCCGCGCA 186817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 6973 ATCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGG 7032 |||||| || ||||| ||| || | || || ||||| ||| |||||||||| || Sbjct 186464 ATCGCCCGGCTGCAGCAGCGCGAGGAACACGGCCTGGTTCATCTGCGAACCGGAATTCGG 186405 Query 7033 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT- 7091 || ||||| ||||| ||| | ||||| | || || ||||| || || || |||| Sbjct 186404 CTGGACGTTGGCGAAGTTGACGCCGAACAGCTTCTTGGCGCGCTCGATGGCGAG-TTCTT 186346 Query 7092 ---CGATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAG 7148 |||| || || | || ||||||||||| || ||||| ||||| || || | Sbjct 186345 CAGCGATGTCGACGAACTGG---CAGCCGCCGTAATAACGCTTGCCCGGATAACCTTCCG 186289 Query 7149 CATACTTGTTGGTAAAAATAGAACCTTGCGCTT 7181 |||| |||||||| | || ||||| ||||||| Sbjct 186288 CATATTTGTTGGTCATGATCGAACCCTGCGCTT 186256 >seq11622 Length=276999 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 54787 AAGCAGGAATCGCGATCGCAGCGAGTATAGCAATAATCACAACAACGATCATAAGTTCGA 54846 ||||||||||||| |||||||| || ||| |||||||| ||||||||||||| | ||||| Sbjct 96036 AAGCAGGAATCGCAATCGCAGCAAGGATACCAATAATCGCAACAACGATCATTAATTCGA 95977 Query 54847 TCAGTGTAAAACCTTT 54862 | || |||||||| || Sbjct 95976 TAAGAGTAAAACCCTT 95961 >seq9639 Length=103419 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 7001 ACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCAACTAAAC 7060 || || ||||| ||||| || ||||| | ||| |||||||| || | | | ||| Sbjct 20349 ACGGCCTGGTTGGCCTGGGAGCCGGAGTTGGGCTGAACGTTGGCTGCCTCGGCGCCGAAC 20408 Query 7061 AG-TTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGCC 7119 || ||||| | |||| || || || || | ||||| | | ||| | ||| | || ||||| Sbjct 20409 AGCTTCTTGA-CACGGTCGATGGCAAGCTGCTCGACCACGTCGACGTTTTCGCAGCCGCC 20467 Query 7120 GTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGT 7161 ||| || || ||||||||||| || || || ||||||||||| Sbjct 20468 GTAGTAGCGCTTGCCTGGATAGCCTTCTGCGTACTTGTTGGT 20509 >seq10996 Length=378002 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 6488 GCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGAATACCCGGGAAGATAGCAGAA 6547 ||||| || ||||| |||||||| | ||| || ||||| | || ||||| | || ||| Sbjct 202679 GCCTTGGCGGCGATGACATGCATCAGCGGTCCGCCCTGCAGGCCGGGGAACACCGCCGAA 202738 Query 6548 TTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGACCACCACGAGGGCCGCGC 6607 || || ||||||| ||| || | ||||| || || | | || || || ||||||||| Sbjct 202739 TTGACCTTCTTGGAGATCTCCTCGTCGTTGGTGAGCACCATGCCGCCGCGCGGGCCGCGC 202798 Query 6608 AAAGTTTTATGAGTTGT 6624 || ||||| || || || Sbjct 202799 AAGGTTTTGTGGGTGGT 202815 >seq8280 Length=144189 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 6974 TCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGT 7033 ||||| || ||||| ||| | | || || ||||| ||||| | || || || || Sbjct 53853 TCGCCCGGCTGCAGCAGCGCCATGAACACCGCCTGGTTGGCCTGGGCGCCCGAGTGCGGC 53912 Query 7034 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7093 || ||||| ||||| | ||||| | || || ||||| || |||||||||||| Sbjct 53913 TGGACGTTGGCGAAGCCGGCCTCGAACAGCTGCTTGGCCCGCTCGATGGCCAGGTTCTCG 53972 Query 7094 ATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATAC 7153 | | ||| | | | | || ||||| || || || ||| ||||| ||||| || ||| Sbjct 53973 ACGACGTCGACATATTCGCAGCCGCCATAGTAGCGACGGCCCGGATAGCCCTCGGCGTAC 54032 Query 7154 TTGTTGGTAAAAATAGAACCTTGCGC 7179 |||||||| | || ||||| || || Sbjct 54033 TTGTTGGTCAGGATCGAACCCTGGGC 54058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553249438101720