Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq7053 93.3 5e-14 seq9470 87.8 2e-12 >seq7053 Length=464797 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 40715 CATCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTCACTG 40774 ||||||||| || |||||||| | |||| ||||||| |||| || |||||||| Sbjct 70514 CATCGTTTCGGCGTGGAACCCGGCGCTGGTGGACGAAATGGCGTTGCCGCCCTGTCACTG 70455 Query 40775 TTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCGGT 40834 | ||||||||| || | | || || ||||| ||| |||||||| || | Sbjct 70454 CCTGTTCCAGTTCTATGTTTCCGATGGAAAGCTGTCCTGCCAGCTCTATCAGCGCTCTGC 70395 Query 40835 TGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGAC 40885 ||| ||||| | || |||||||||| ||||||||||| || || ||||| Sbjct 70394 CGATATCTTCCTCGGCGTGCCGTTCAACATCGCCTCCTATGCGCTGCTGAC 70344 >seq9470 Length=127963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 40715 CATCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTCACTG 40774 |||||| || || |||||||| | || | || | ||||| ||| ||||| ||||| Sbjct 52878 CATCGTCTCGGCCTGGAACCCGGCCGACGTCGACGACATGGCCCTGCCGCCGTGCCACTG 52819 Query 40775 TTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCGGT 40834 | ||||||||| |||| |||| |||||||| | | || ||||| |||| Sbjct 52818 CCTGTTCCAGTTCTTCGTGGCGGACGGAAAACTGTCCTGCCTGCTTTACCAGCGCTCGGC 52759 Query 40835 TGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGAC 40885 || | ||| | || |||||||||| |||||||||||||| || ||||| Sbjct 52758 CGACCTGTTCCTCGGCGTGCCGTTCAACATCGCCTCCTACGCCCTGCTGAC 52708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577363298114400