Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq7272 385 1e-102 seq5906 84.2 5e-12 seq9683 80.6 6e-11 >seq7272 Length=98981 Score = 385 bits (426), Expect = 1e-102 Identities = 682/980 (70%), Gaps = 32/980 (3%) Strand=Plus/Plus Query 2887 GCCCGTCGAGCGCATCGAGGCATCGCTCGAAGTGCGCATGATGGTGTTGATCGCGAAGGA 2946 |||||| ||||| |||||| |||||| ||| ||||| || | | ||| ||||| Sbjct 40776 GCCCGTGGAGCGTGTCGAGGGATCGCTGGAAATGCGCCTGTGCACGCTCATCAACAAGGA 40835 Query 2947 GAAGAAGGACGGTGCGGACTACAAGGAAATCGACCTGCTCGGCCG--CCAAGTCGAGCGG 3004 | |||| | | |||||||||||||||||| ||| || || ||| | ||||| Sbjct 40836 GGGCAAGGGCAACGGCGACTACAAGGAAATCGACGCGCTGGGGCGTGCCATG--GAGCGC 40893 Query 3005 CTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGATCTGAACCCGAAGATT 3064 | |||||||||| ||| ||||| ||||| |||||||||||||| |||| ||| Sbjct 40894 TTGGCGCGCGTGCACAAATACGAGCGCACGGGCCGAGAATCGGATCTGAATCCGACCATT 40953 Query 3065 GCGTCGCGCAACGCCGGCCCGAA-----ACGCCGTGCGC---CCCGTAACGAAATCAGCG 3116 | |||||| ||||| || || | ||| |||| | | | ||| || || Sbjct 40954 GAAAAGCGCAATGCCGGACCTAAGAAGCAGCCCGAGCGCAATCACTTCACG---TC--CG 41008 Query 3117 ACGAACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTATCAGAAAG 3176 | || | ||||| || || | || || | |||||||| ||| |||| || || Sbjct 41009 AGGACGTGGACAAGATCA-CACGG--GCATTTCTGGATTCGCTTTTCAACTACCAAAACA 41065 Query 3177 TCTGGTATCGGAACGG--CGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGG 3234 |||| ||| | | | | |||||||||||| ||| || |||||||| |||||||| Sbjct 41066 CATGGTG--GGAGCAGATCCAGCAGCGCACGCGCGCCATTCTCAAATCGCGCCAGATCGG 41123 Query 3235 TGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACCGTAATCA 3294 || ||||||||||||| |||||||| || | || ||||| | || | ||| ||||| Sbjct 41124 GGCAACGTGGTACTTCGGCCGCGAGGCCCTGATTGATGCCCTGAAGACGGGCCGCAATCA 41183 Query 3295 AATCTTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCAAGCAGTACATCA-CGCAGT 3353 || || || ||||| ||| || ||||| || || ||| ||||||||||| ||| || Sbjct 41184 GATTTTTCTTTCGGCCAGCCGTGCGCAGGCCCATGTTTTCCGGCAGTACATCATCGC-GT 41242 Query 3354 TCGCGCGCGGGGCAGC-CGACATCGAGCTCACGGGCGATCCGATTATCTTGCCGAGCGGC 3412 | || | || ||| ||| ||||| | | |||||| || || || || | ||| Sbjct 41243 TTGC-CAAGGAGCATTGCGATATCGATTTGAAGGGCGACCCCATCGTCCTGAGCAATGGC 41301 Query 3413 GCGACGCTGTACTTCCTGGGCACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTC 3472 || |||||||| ||||||||||||| ||| |||||||||||||||||||||||||| || Sbjct 41302 GCCACGCTGTATTTCCTGGGCACGAGCGCCCGCACCGCGCAGTCGTACCACGGCAATCTC 41361 Query 3473 TACTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGC 3532 || ||||| |||| ||||||||| || ||| |||||| ||||| ||| ||| Sbjct 41362 TATTTCGATGAATTCTTTTGGGTCAACAACTTCACGGAGCTGTGGAAGGTGGCCAGCGGT 41421 Query 3533 ATGGCGATGCACAAGCGCTGGCGCAAGACGTACTTCAGCACGCCGTCCAGCGTCACGCAC 3592 ||||| || ||||||| |||||||||||| || |||||| |||| | |||| Sbjct 41422 ATGGCCATCCACAAGCATTGGCGCAAGACGCTGTTTTCCACGCCCAGCAGCCTGCAGCAC 41481 Query 3593 GAGGCGTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCGAGCGC 3652 |||| || ||| | ||||||| || | | ||| |||||| || ||| Sbjct 41482 CAGGCCTATGCGCTGTGGAGCGCCGAACGCATCAACAAGAAGCGCGCCAAAAAGGACCGC 41541 Query 3653 ATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAG 3712 || || | ||| |||||| | || | | ||| | |||||||| | Sbjct 41542 ATAGAGCTGGACCTGAGCCATTCGCACCTGGCTGGAGGCTTCACCGGCGAGGACAAGATA 41601 Query 3713 TGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATC 3772 ||||||||||| || || ||||| |||||| | ||||||||| | ||||||||| | Sbjct 41602 TGGCGGCAGATTGTCACGGTGCTGGATGCGCAGCGCGGCGGCTGCAATCTGTTCGACCTT 41661 Query 3773 GACGAGCTGCGCCGCGAGTACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGCCAGTTC 3832 ||||| |||||| |||||| | |||||||| | || |||||||||||| ||| Sbjct 41662 GACGAACTGCGCTTCGAGTATTCGGACGAGGAATGGGACAACCTGCTCATGTGCGGGTTT 41721 Query 3833 ATCGACGA----TTCGCTGT 3848 |||| || |||||||| Sbjct 41722 GTCGATGACACCTTCGCTGT 41741 Score = 275 bits (304), Expect = 2e-69 Identities = 630/929 (68%), Gaps = 42/929 (5%) Strand=Plus/Plus Query 4558 GCGCCGGCGCGTGCCGAGGTCTTCACGTTCGACGATCCGACGCCCGTCATGAACCGGGCC 4617 |||||||| |||||||| ||| | |||| |||||| | |||| || ||||| | Sbjct 42420 GCGCCGGCCACTGCCGAGGCTTTCTCTTTCGGCGATCCCGAGGCCGTGCTGGACCGGCGC 42479 Query 4618 GAGATTCTCGATTACGTCGAGTGCTGGTCGAACGGCGAATGGTTCGAGCCGCCGGTCAGC 4677 || || | |||||||| || |||||| || || || |||| ||| | || ||||| Sbjct 42480 GAAATCTTGGATTACGTGGAATGCTGGCTCAATGGGGATTGGTACGAAACCCCCATCAGC 42539 Query 4678 TTCGCCGGCCTGGCGAAATCGTTTCGCGCGAGCACGCACCATAGCTCG---GCGCTGTTC 4734 |||| || |||||| || | ||||| ||| ||||| || |||| | | Sbjct 42540 TTCGATGGTCTGGCGCGCACGCTGCGCGCTGCCACCCACCA-----CGAAAGCGCCATCC 42594 Query 4735 --TTCAAGGCGAACGTGCTGGCGTCGACATTCCGCCCGCA-CCGCTGGCTGT--CGCGGC 4789 |||||||| | ||||| || || | ||||| || ||||| ||| |||| | Sbjct 42595 AATTCAAGGCCCAGGTGCTCGCCAGCACGCTGCGCCCTCATCCGCTT-CTGAACCGCGCC 42653 Query 4790 ACGCGTTCGAGCGGTGGGC-GCTC--GATTTCCTGACGTTCGGCAACGGCTATCTGGAAC 4846 ||| | || |||||| |||| || ||||| |||||||| ||||| | || | Sbjct 42654 ACG-----GTGCAGTGGGCTGCTCTGGACTTCCTTGTTTTCGGCAATGGCTACTTTGAGC 42708 Query 4847 GCCGCCGCAACATGGTC--GGCGGCACGCTGCGGCTTGAGCC-CGCGCTCGCGAAGTACG 4903 ||| ||||| | ||| || ||| | ||| || | ||| || || || |||||| Sbjct 42709 GCCCGCGCAA--TCGTCTGGGTGGCTCATTGCCCCT-GCGCCACGTACTGGCCAAGTACA 42765 Query 4904 TCCGGCG-CAAGGCCGATTTCAACGGCTTCGTGTACGT-GAACGGCTGGCAGGAGCGGCA 4961 |||| || | | | ||| || || | || | || ||||||||| ||| Sbjct 42766 CAAGGCGGCATCGTGGTCTGAAACTCTTTGGTTTCCGCCGCAC--CTGGCAGGAAGAGCA 42823 Query 4962 CGAGTTCGAGCCCGA---CAGCGTGTTCCAGCTCGTGCGGCCGGACATCAATCAGGAGGT 5018 | ||| ||||| |||| | | ||| || | | ||| || | | ||||| | Sbjct 42824 CACGTTT---CCCGAAGGCAGCATTTGCCACATCCTCCAGCCCGATGTGCACCAGGAAAT 42880 Query 5019 CTACGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAACGAATCGTCGAC 5078 ||| || ||||| |||| ||| | ||||||| || |||||||| || || ||| | || Sbjct 42881 CTATGGACTGCCGCAGTACCTGGCCGCGCTGCAGTCCGCCTGGCTCAATGAGTCGGCCAC 42940 Query 5079 GCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCATCCTGTACATGAC 5138 |||||| |||||| ||||||| | || || ||||| ||||| | |||||| || ||| Sbjct 42941 GCTGTTTCGGCGCCGGTATTACAACAATGGGAGCCATGCCGGATACATCCTCTATCTGAG 43000 Query 5139 CGACGCCGCGCAGAAGCAG--GACGACGTGGACAACATGCGCGACGCGCTGAAGAACGCG 5196 ||| ||| || ||| ||||| ||||| ||||| | || |||| | Sbjct 43001 CGATCCCGA--AGTGGCAAAAGACGATGTGGATGCGCTGCGCCAGGCCTTGAAATCTTCC 43058 Query 5197 AAGGGGCCTGGCAACTTCCGCAACGTGTTCATGTACGCGCCGGGCGGGAAGAAGGACGGC 5256 ||||| ||||| |||||||| |||| | | |||| ||||| || || | | | Sbjct 43059 AAGGGCATGGGCAATTTCCGCAATCTGTTTTTCCATTCGCCCGGCGGCAAAGAGAAAGCC 43118 Query 5257 ATCCAGCTCATCCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTTCTTCAACATCAAGAAC 5316 ||||| || | ||| | ||||| || || ||||| || || ||||||||||||||| Sbjct 43119 ATCCAACTGCTGCCCATCGGCGAGGCGGCGGCCAAGGATGAATTTTTCAACATCAAGAAC 43178 Query 5317 GTGACGCGCGATGACCTGCTCGCCGCGCACCGCGTGCCGCCGCAGTTGCTTGGCATCGTG 5376 |||| |||||||||| | ||||| ||||||||||| |||||| | | ||| | ||| Sbjct 43179 GTGAGCCGCGATGACCAATTGGCCGCCCACCGCGTGCCTCCGCAGCTCATGGGCGTGGTG 43238 Query 5377 CCGAGCAATTCGGGCGGGTTCGGTACACCGGACACCGCCGCGCGCGTGTTCGGGCGCAAC 5436 ||| |||| | || || ||||| || || ||| || || ||||||| ||||||| Sbjct 43239 CCGGCCAATGCAGGTGGCTTCGGCGATGTGGTCAACGCTGCACGGGTGTTCGCGCGCAAC 43298 Query 5437 GAAATCAGGCCGCTACAGGCGCGCTTCGC 5465 |||||| ||| || ||| |||||||||| Sbjct 43299 GAAATCCAGCCCCTGCAGACGCGCTTCGC 43327 Score = 187 bits (206), Expect = 6e-43 Identities = 526/788 (67%), Gaps = 30/788 (4%) Strand=Plus/Plus Query 869 AGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCGG-GAAGAACGGC 927 ||||||| ||||| ||| ||| ||||| | ||| | | | ||| |||||| ||| Sbjct 38614 AGTAGATGGACAGGTTTTTCAGAGGCGTGATGAGCAGGCCAC-CGTCGATGAAGAAAGGC 38672 Query 928 ACGCGCACGGCC-GGCAGATTGCCGATGCGCTTCTGGCTCACGATCAGATCGGCCGCGAG 986 ||| ||||||| ||| | ||| | |||| |||||||||| | || |||||||| || Sbjct 38673 ACGGTCACGGCCTGGCTGCC-GCCCAGGCGCATCTGGCTCACCACCATGTCGGCCGCCAG 38731 Query 987 CCGCTCGGTCGGCGCCTGCGTCGC-GTTGACGATCGGGAAATACTTGTCGTGCAGCAGCT 1045 |||||| | ||| | ||| | ||| ||||| ||||| |||||| |||| ||| | Sbjct 38732 GCGCTCGCTGGGCAGAT-CGTTGTTGTTCACGATGGGGAACAGCTTGTCATGCATCAGGT 38790 Query 1046 CGCGGCCGCAGATCACGACGAGGCCCGTGT-CTTCCTGGAACCACGGGTCGATCATCGAC 1104 | || |||||| || || ||| || ||| | || ||||| || |||| ||| Sbjct 38791 CATCGCTGCAGATGGCGCGCAGATCCGGGTGCTTGC-GGTGCCACGAATCAATCAGCGAG 38849 Query 1105 GACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATCGCCCGCCTTGCCGACGAGC 1164 | | |||||| | || ||||||||||||| ||| ||||| || || || Sbjct 38850 TGCTTGGCATCCATGGCCAGGGCGTCGAGGTTCTTGTAGTCGCCACCCGGTCCCACAGTG 38909 Query 1165 ACCTTGCCGGCCTGCTTCGCGCCTTCGTGCAGCACGCGCTGCGCTGCGCGCTCGCGGTAC 1224 |||||||| ||| ||| ||| || ||||||| | || ||||| Sbjct 38910 ACCTTGCCCGCCACCTT---GCCAGAAGACATGACGCGCTCGGGCGCCTCTTCGCGCAGG 38966 Query 1225 TGTTGCAGCCAGCCGATGTTCACGTCCTGCAACAGCGGGTTTGCCTGACGGTCGGTCGTC 1284 | |||||||| || || ||| ||||||| || ||||| || || ||| || Sbjct 38967 CGCTGCAGCCACCCCTTGGTCAGATCCTGCAGCAAAGGGTTGGCGGTCAAGTTGGTGGTG 39026 Query 1285 GC---GGCCGCCTTCACGCCGTTCCAGCCGATCATGATGCGATCGAGCGCCCCCTGGTTG 1341 || ||| |||| ||||||||| || | ||||||||| || ||||| | | | Sbjct 39027 GCCTTGGCTTCCTT---GCCGTTCCATCCCACCATGATGCGGTCCAGCGCATTGCGTTCG 39083 Query 1342 AGGATCACGTCGCGGATGCGCTGCTGGAAGTCGGCGAACTTCGCCCACATGTCGAGC-TT 1400 |||| ||||| ||| ||| ||| ||||||| ||| | |||||| |||||| | Sbjct 39084 GCAATCAGGTCGCTGATACGCACCTGAAAGTCGGGGAAGTGCGCCCAGGCATCGAGCATC 39143 Query 1401 GCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGCGGTAGCGGTTGCTGTCGAG 1460 ||| ||| || || ||| | || ||| | |||| |||| | | | |||| Sbjct 39144 GCG-TACTTGATGTGGGTATCGGAATCAATCTGCAGGCAGTGGTATCCGGTCTTGTCCTT 39202 Query 1461 CGCCGTCGGGTCGATCGGTTGGCGCGCGGCCTTC----GTCGTGTCGGTGCGGCTCGCGA 1516 | ||||| || | | | ||| | |||| || || ||||| |||||||| |||| Sbjct 39203 GCCTGTCGGATCTTTGGTCTTGCG-GGGGCCGTCAGCGGTGGTGTCCGTGCGGCTGGCGA 39261 Query 1517 TCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCTTCGAGCT-CGG--TCACGGGCAGCA 1573 || | || || | ||| || | ||||||||| | ||| ||| ||||||||| | Sbjct 39262 CGGGACGGGTCAGGCTCAGACCCACCTTTTCGCCCT---GCTGCGGCACCACGGGCAGGA 39318 Query 1574 CGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATCTTCGTTTCGAGCCGCTGTTGCA 1633 ||||||| ||| || || |||||||||||||| ||||| ||| ||| |||| Sbjct 39319 TGTTGATGGACTTCAGGAATGAACTCGATTCCTGCATGCGGGTTTCCAGCTTCTGCTGCA 39378 Query 1634 CGGTCGGC 1641 |||||||| Sbjct 39379 CGGTCGGC 39386 Score = 167 bits (184), Expect = 6e-37 Identities = 565/864 (65%), Gaps = 32/864 (4%) Strand=Plus/Plus Query 25236 CCACGCGCGCCGGGAAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGAT 25295 |||||||| | ||| ||| ||| |||||||||||||||||||||| | |||| | Sbjct 24766 CCACGCGCATGGCGAAGTCGCCGAAATAGCGGTCGGTGATGCGCTGGCGGAATCCCAGGT 24825 Query 25296 TTTCGAGAGGCGGAACCGGCGTGTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAA 25355 ||| || ||||| || |||||||||||||| || | | |||||||| | ||| Sbjct 24826 CTTCCAGCGGCGGCACGGGCGTGTAGTCGTAGTCAAGCACCAGCTTGCCGGCCTTGAGCG 24885 Query 25356 TGTCGGCCGTGTTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCG 25415 || | ||||| ||| | || | ||| |||| ||| ||| | |||||| | Sbjct 24886 CTTCTGTGGTGTTGACCTCGGCGTCAAACCAGGCGCGGCCGTCGAGGATGTAGCC---CA 24942 Query 25416 CGACCT---GCTGCCGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACG 25472 | ||| | | || ||| | | ||||||| |||||||||||| | | | | Sbjct 24943 GGGCCTTGAGTTCGCGGAACTTGGCATTGATGCCTTCCACGATGTCTTTCACCATGCTGG 25002 Query 25473 GATTCAGCGGGCCGTCGACGACGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCT 25532 | | || || |||||| | || | || | || || || | ||| | ||||| Sbjct 25003 GGTGCATGGGCTTGTCGACAAAGGCGAAATGACCCTCTGCCATGGTGTCGGCCAGCACCT 25062 Query 25533 GAGCGGTGCGCGTGTAGTTCTCGAACGCGAAC--TTCGGATCGTCCGAGCACGTGCGCTC 25590 | || |||||| | | |||||| |||| |||| ||| ||| |||||| Sbjct 25063 GGGCAGTGCGCACGCTGGACTCGAATCGGAACAGTTCG--TCGGTGCTGCAGGTGCGCGA 25120 Query 25591 GCCCCAGAACCGGAAGCCGTTGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTA 25650 |||||||| || |||| | | ||| | |||||| || || | | ||| || || Sbjct 25121 TCCCCAGAAGCGATAGCCCTGGTAGTTGATGAGCGTGGTGACGTTGCCCTCATTGAGCAG 25180 Query 25651 GCCCGCATCGGTCGCCGGGTCCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACAC 25710 | || || ||| ||| | |||| || | |||||| ||||||||| | Sbjct 25181 GTTTGCGTCCGTCTCCGAGCTTTGCAGGTCGAAATGCACGTCCTTGCTGATGCCCACCGG 25240 Query 25711 GCCGTTCA-CGACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCG 25769 ||| || | || | || || || | ||||||||||| || || |||||| | Sbjct 25241 GCCATTTAGCGGC-ACGTTTGACAGGGTCTTGTGCCAACCTTGCTCCACGTCGATGCGGG 25299 Query 25770 CGCGCAAGCCG---GCG---GCGATCGCCGGCGCCGGGATGACAGCCGTCGAGTTCGTCG 25823 |||||| || ||| || | |||||||| |||| ||| | ||| | || Sbjct 25300 CGCGCAGCCCCATCGCGTAGGCCACAGCCGGCGCATTGATG---GCCTT---GTTTGCCG 25353 Query 25824 TGTCGTCCCAGCCGAGCCAGTCCGGCCAGATCACCATGATTTCGCGTTGGCCG-AACTGC 25882 || || |||| | | || ||||||||||||||| ||||||| |||| |||| | Sbjct 25354 TGGTGTTCCAGGCTTTGAAATCGGGCCAGATCACCATGGTTTCGCGGGCGCCGAAACTCC 25413 Query 25883 TTGCGGTACGCGGCGGCTT--CTTCCTTCGTTTTGCAGCCGGACGCCGACACATAGGCCA 25940 ||| ||||| ||| | || | ||| | | |||| | || ||| ||||||| Sbjct 25414 CTGC-ATACGCCAGGGCCTCGCTCACATCG--TCGGCGCCGTGCCCCTGCACGTAGGCCA 25470 Query 25941 TCGCGCGCAGC-GACTGCGCGGTCGCCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGG 25999 | ||||||||| | || |||| |||| ||| || ||||||| |||| || || || Sbjct 25471 TGGCGCGCAGCTGGATG-GCGGCGGCCGTGAGGGCATCCGCCACGGGCTTGGTGTCCAGC 25529 Query 26000 CCGGGCGCCGCGAGAATGCGCGGCTTCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCC 26059 ||||| || | || ||||| || |||||||| ||| |||||||| || ||||||| Sbjct 25530 CCGGGGGCGCCCAGGATGCGGGGTTTCACGCCCAGCTGCTGCTGCGCGGTGATCAGCGCC 25589 Query 26060 TTGATGCCCGTGTACTTGCCGTCC 26083 | ||||| | | ||||||| || Sbjct 25590 TGAATGCCGGAGCGCTTGCCGGCC 25613 Score = 105 bits (116), Expect = 2e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 2144 GCTTCGCGGCGAATTGCAGCGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGA 2203 ||| |||||| || |||||| |||||||| ||||| ||||| |||||| | || | Sbjct 39967 GCTGCGCGGCAAACTGCAGCATCTCGGTGCCCAGGCTGGCCGGCGTGTCGGTGACGGCCA 40026 Query 2204 GCCCGACGAGATACGCCTCGCCGATGTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGA 2263 | ||||| | ||| ||||| ||| | | ||||| ||||||| | |||||| || || Sbjct 40027 GGCCGACCATATAGGCCTCTCCGGAGCCCGCGAAATCGGGGTCCACCTCGATGGAGGTAT 40086 Query 2264 AGAGCTTCTGGCGCTTCTTCGACAGTGCGACGAGCTCGTCGGTCGGATCGATCTGCGCAT 2323 |||||||||||| ||||| | |||| || ||| || | |||||||||| Sbjct 40087 AGAGCTTCTGGCCCTTCTGGTTGATGGCGATCAGAGAGTCCAGGGGCTGAATCTGCGCAT 40146 Query 2324 ACAGCGCCATCTTCCC 2339 ||||||| | ||| || Sbjct 40147 ACAGCGCGAGCTTGCC 40162 >seq5906 Length=1255 Score = 84.2 bits (92), Expect = 5e-12 Identities = 223/334 (67%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 25970 AGCGCGGCCGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCGCGGCTTCACG 26029 ||||| | || ||||| |||||| || |||||||| | |||| || ||||| || Sbjct 293 AGCGCCGTCGTCACCGCCTGCGTTTCAAGGCCGGGGGTGACGAGGATCTTTGGCTTGACC 352 Query 26030 CCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCGGCGTC 26089 || ||| ||||||| || |||||||||| || || || | | ||||| |||||| Sbjct 353 CCCAGCTGCGCCTGCGCCGCCAGCAGCGCCTGCATACCTGTCTTTTGGCCGTT-GGCGTC 411 Query 26090 ACG-GTGCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACGCGCAC 26148 || |||||||| || || || || | || || | |||||||| ||||| || Sbjct 412 GGTCGTACCGATGACATTGCTGGCGGTTTCCGCCGCATCGTCCCCTTCGGCCACGCGGAC 471 Query 26149 GACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGCGTGCGGCGCAGCGTGCC 26208 ||||| | | ||| | || | | |||| ||| |||| || ||||||||| Sbjct 472 CACGACAATGATCGGGCGAGCATGATCGGCGATGGCGCGCAGCGACAGGGCCAGCGTGCC 531 Query 26209 TTTCTTGCCGGCCTTGCCGAGCGCCGCGACGACGTTCGTCAGCAGCAC-GGGCGTATTGA 26267 | | | ||||| ||||| || | | || | || | ||| | ||||| || || Sbjct 532 GTCCGTCCCGGCGGCGCCGATGGCGGTTTCAACATCGGTGATGAGCGCCGGGCG-ATCGA 590 Query 26268 GCGGAAACGCGCTCGCG---TCAGCGTCGGCCGC 26298 |||| || | | ||| |||||||||||||| Sbjct 591 GCGGGAA---GATAGCGGGATCAGCGTCGGCCGC 621 >seq9683 Length=137075 Score = 80.6 bits (88), Expect = 6e-11 Identities = 104/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 9525 GCCACGTGGTCCCGCCCGAGGTGCGCGTAGCGCAGCACCATCTGATAGC-TGGCCCATCC 9583 |||| ||| ||| || | ||||| || || | |||||||| ||| | ||| || Sbjct 49437 GCCAAGTGCTCCGGCGCCAGGTGGGCATATTTCTTCACCATCTCC-AGCGTCTTCCAGCC 49495 Query 9584 TCCGAGCTGCTGAAGGATTGGCAGAGGCGTGCCGGCCTGAACGTGCCAGCTCGCCCACGT 9643 ||| |||| || |||| ||| |||||||||| || || |||||||||||||| || Sbjct 49496 TCCCAGCTCCTTCAGGACGAACAGGGGCGTGCCGGATTGGACATGCCAGCTCGCCCAGGT 49555 Query 9644 GTGCCGCAGATCATGAAAGCG 9664 ||||||||| || || ||||| Sbjct 49556 GTGCCGCAGGTCGTGGAAGCG 49576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120301683128558