Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq8995 95.1 1e-14 seq899 93.3 4e-14 >seq8995 Length=8301158 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 119646 TACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATA 119705 |||||||| || | || ||||| || |||||||| ||||| || || || || | |||| Sbjct 6968512 TACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATA 6968571 Query 119706 AACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGA 119765 || || || |||||| | |||||| |||| |||||| ||| | || |||| | Sbjct 6968572 AAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTA 6968631 Query 119766 TCTGCCACAAACTCGATGTA 119785 |||||||| ||||||||||| Sbjct 6968632 TCTGCCACGAACTCGATGTA 6968651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 119648 CTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAA 119707 ||||| || | || ||||| || |||||||| ||||| || || || || | |||||| Sbjct 6971382 CTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAA 6971441 Query 119708 CTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATC 119767 || || |||||| | |||||| |||| |||||| ||| | || |||| ||| Sbjct 6971442 GTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATC 6971501 Query 119768 TGCCACAAACTCGATGTA 119785 |||||| ||||||||||| Sbjct 6971502 TGCCACGAACTCGATGTA 6971519 >seq899 Length=2520420 Score = 93.3 bits (102), Expect = 4e-14 Identities = 168/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 26753 TTTTTAGTCAAACAAA--ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACC 26810 ||||| || |||| | ||||| | |||||||| || | ||||| ||| | || || Sbjct 2265558 TTTTTGTTCCAACAGACAATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATTACT 2265499 Query 26811 ATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAA 26870 | || | || ||| |||||||||||| | ||||| ||||| || |||||| Sbjct 2265498 CTGGAGGTGGAGCCAAGTGACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAA 2265439 Query 26871 GGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 26930 || || || || || ||||| || | || | | ||| ||||| || ||||||| | Sbjct 2265438 GGCATCCCCCCAGACCAACAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGC 2265379 Query 26931 AACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGA 26990 | | | ||||| ||||| || ||||| || ||| | || |||||||| | || ||| Sbjct 2265378 ACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 2265319 Query 26991 GGAGG 26995 || || Sbjct 2265318 GGTGG 2265314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478572297786480