Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq8995 113 1e-19 seq13960 91.5 4e-13 >seq8995 Length=8301158 Score = 113 bits (124), Expect = 1e-19 Identities = 144/195 (74%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGC-----GCTGAAATGGATGAACAATGAACGTTCATTCGCGG 22489 ||||| |||||||||||||| |||| | ||| | |||| ||| | ||| | | Sbjct 6969008 AAGAAGAAGGCAGATTGGGCCTTGCGCTGGACTGG--GGACAAAGAAGCTACATATGGAG 6968951 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CA 22548 ||||| | | || ||||||| || |||||||| |||||||| || | ||||| | | Sbjct 6968950 AACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTC-TTTTGCGTCT 6968892 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || |||||||| ||||| | ||| Sbjct 6968891 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATT 6968832 Query 22609 AGCCGAGATGAGGGT 22623 ||| ||||||||||| Sbjct 6968831 AGCAGAGATGAGGGT 6968817 Score = 113 bits (124), Expect = 1e-19 Identities = 144/195 (74%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGC-----GCTGAAATGGATGAACAATGAACGTTCATTCGCGG 22489 ||||| |||||||||||||| |||| | ||| | |||| ||| | ||| | | Sbjct 6971876 AAGAAGAAGGCAGATTGGGCCTTGCGCTGGACTGG--GGACAAAGAAGCTACATATGGAG 6971819 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CA 22548 ||||| | | || ||||||| || |||||||| |||||||| || | ||||| | | Sbjct 6971818 AACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTC-TTTTGCGTCT 6971760 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || |||||||| ||||| | ||| Sbjct 6971759 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATT 6971700 Query 22609 AGCCGAGATGAGGGT 22623 ||| ||||||||||| Sbjct 6971699 AGCAGAGATGAGGGT 6971685 >seq13960 Length=3940437 Score = 91.5 bits (100), Expect = 4e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 2058046 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 2057987 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| || | || || || | Sbjct 2057986 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACTTGGGAACCATCAAATGC 2057927 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 2057926 AGCAACCTGTGCACAGAAATAGTGGAGTATACC 2057894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303102126476138