Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_007497.1
Length=44856
Score E
Sequences producing significant alignments: (Bits) Value
seq6145 224 3e-54
seq6602 138 3e-28
seq1205 114 4e-21
>seq6145
Length=2096
Score = 224 bits (248), Expect = 3e-54
Identities = 266/353 (75%), Gaps = 8/353 (2%)
Strand=Plus/Minus
Query 39213 ACTCGCTGGCGGCGACCTTCATC-GCGCGCATCGGCTCCGGATTCAGCAGGCCGCCGCCG 39271
||| ||| || |||| ||||| | || | |||| || ||| ||| ||||||||||
Sbjct 578 ACTAGCTCGCCGCGAACTTCAGCAGCTTG-ATCGCGTCGAAGTTCTGCACGCCGCCGCCG 520
Query 39272 ACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATCGCGCAGCACG 39331
|||||||| |||||||||||||| |||| |||||| |||| |||||| |||||||||||
Sbjct 519 ACGCGCTTGGTCGTGTAGAACAGCACGTGCGGCTTGGCCGAGTACGGGTCGCGCAGCACC 460
Query 39332 CGAACCCCGATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGCCGAAGAGAATCGGC 39391
|| || ||| |||||||| ||||||||| || || |||||||||||| |||||
Sbjct 459 CGCACGCCGGCGCGGTCGACGATCAGATAGCCCTTCTCGAAGTCGCCGAACGCGATCGGG 400
Query 39392 GTCGAGTTCGCCGCCACATCCGGCATGTCCGGCACCTCGGTAACCGGATAGCCCGCCAGC 39451
| ||| || || ||||| |||||| || | |||||| ||||| ||||| |||
Sbjct 399 CAGGCGTTGGCGGCGACATCGGGCATGGCCTCGATCTCGGTGACCGGGAAGCCCAGCAGG 340
Query 39452 GTCGCCGGCT-GCCCCGCTACGTACGACGGTTGCCAGAGATAGTTCCCTTGGCCGTCCTT 39510
|||||| || |||| ||| | || || | ||||| ||||| ||||| |||||||
Sbjct 339 CTCGCCGACTGGCCCGGCTGC-AGCGCCGCGTTCCAGATGTAGTTGCCTTGCGCGTCCTT 281
Query 39511 CAGCTTCCGCACCTGACGCTG--CGTGTTGCGGTTCATCGCGAAGCGGGCGTT 39561
| ||| |||||| ||||| |||| |||||||||| |||||||| ||||
Sbjct 280 GAACTTGCGCACC--GCGCTGACCGTGCGGCGGTTCATCACGAAGCGGCCGTT 230
>seq6602
Length=331455
Score = 138 bits (152), Expect = 3e-28
Identities = 223/310 (72%), Gaps = 8/310 (3%)
Strand=Plus/Minus
Query 39242 ATCGGCTCCGGATTCAGCAGGCCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTAC 39301
|||| ||| |||| | | |||||| || |||||||| || ||||||||||| || ||
Sbjct 295120 ATCGCCTCGAAATTCTGTACGCCGCCACCCACGCGCTTGGTGGTGTAGAACAGCACATAG 295061
Query 39302 GGCTTCGCCGTGTACGGATCGCGCAGCACGCGAACCCCGATGCGGTCGATGATCAGAT-A 39360
|| || |||| || ||||||||||| | ||| || ||| ||||||||| || |||| |
Sbjct 295060 GGTTTGGCCGAATAGGGATCGCGCAGGATGCGCACACCGGTGCGGTCGACGACGAGATAA 295001
Query 39361 CGTCTGCTGGAAGTCGCCGAAGAGAATCGGCGTCG-AGTTCGCCGCCACATCCGGCATGT 39419
| || |||| ||||||||| || ||| | ||| ||||| |||| ||||||||
Sbjct 295000 CCGGAGC-GGAAATCGCCGAAGGCGAT-AGCGAAGCTGTTGGCCGCGACATTCGGCATGT 294943
Query 39420 CCGGCACCTCGGTAACCGGATAGCCCGCCAGCGTCGCCGGCTGCCCCGCTACGTACGACG 39479
| | |||| || |||||| ||||| ||||| || ||||| || || || | ||
Sbjct 294942 CTTCCGCCTCCGTCACCGGAAAGCCCATCAGCGAGGCGGGCTGGCCGGCGGCGGCGGGCG 294883
Query 39480 GTTGCCAGAGAT-AGTTCCCTTGGCCGTCCTTCAGCTTCCGCACCTGACG-CTGCGTGTT 39537
| |||||||| | || || | | |||||| | |||| | | || |||||| ||
Sbjct 294882 GGTGCCAGAGGTAAGCGCCGGTCG-TGTCCTTGAAGCGGCGCAGC-GCCGCCTGCGTCTT 294825
Query 39538 GCGGTTCATC 39547
||||||||||
Sbjct 294824 GCGGTTCATC 294815
>seq1205
Length=48877
Score = 114 bits (126), Expect = 4e-21
Identities = 197/280 (70%), Gaps = 17/280 (6%)
Strand=Plus/Minus
Query 3513 TCCGCCGCGACCTTCACCTTCACGCGCGCGTCGTCTTGCC--AATGC-------CCCTTC 3563
|| || |||||||||| ||||||||||||||| || || | || |||||
Sbjct 33242 TCGGCGGCGACCTTCATCTTCACGCGCGCGTCTTCCTGGATGACGGCTTCGCTGCCCTTG 33183
Query 3564 ACCTCGTGCGCCTCGAGCTG--GCCGTTCGCGAGCATCACCGTGAAATCGGGCGTGTAGA 3621
|| ||| | ||| | || || ||| ||| ||| |||| ||||||| || ||
Sbjct 33182 ACGTCGATCA--TCGTGATGATGCTGTTGGCGCCCATGACCGCGAAATCGACGGTCAGGA 33125
Query 3622 ACGTGTTGTCGGCGAGACGGAACTTGATGCCCTCGAATCGATACCAGACGATTTCGCCGG 3681
| ||||| ||||| || || | ||||||||||||||| || ||||||| ||| || || |
Sbjct 33124 AGGTGTTATCGGCCAGGCGCAGCTTGATGCCCTCGAAACGGTACCAGAGGATATCCCCTG 33065
Query 3682 CCTGC-TTCCGCGCCTCCAGA--TGGTCGGCGTAGCGCTGCTCGGTCTTGTTCATCGCGC 3738
|| || | ||| | | | || | ||| || |||||||||| | ||||||| || |||
Sbjct 33064 CCAGCATGCCGGGGCGCAGGACCTCGTCCTCGAAGCGCTGCTCCGACTTGTTCTTCTCGC 33005
Query 3739 CGGCCTTCAGTCGACCGAGCGCCTGCATGCGAGTCTTTGC 3778
| | ||| || || || ||||| || |||| || ||||
Sbjct 33004 CCGTCTTGAGGCGGCCCAGCGCGAACAGGCGA-TCCTTGC 32966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143391953258044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |