Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq6145 224 3e-54 seq6602 138 3e-28 seq1205 114 4e-21 >seq6145 Length=2096 Score = 224 bits (248), Expect = 3e-54 Identities = 266/353 (75%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 39213 ACTCGCTGGCGGCGACCTTCATC-GCGCGCATCGGCTCCGGATTCAGCAGGCCGCCGCCG 39271 ||| ||| || |||| ||||| | || | |||| || ||| ||| |||||||||| Sbjct 578 ACTAGCTCGCCGCGAACTTCAGCAGCTTG-ATCGCGTCGAAGTTCTGCACGCCGCCGCCG 520 Query 39272 ACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATCGCGCAGCACG 39331 |||||||| |||||||||||||| |||| |||||| |||| |||||| ||||||||||| Sbjct 519 ACGCGCTTGGTCGTGTAGAACAGCACGTGCGGCTTGGCCGAGTACGGGTCGCGCAGCACC 460 Query 39332 CGAACCCCGATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGCCGAAGAGAATCGGC 39391 || || ||| |||||||| ||||||||| || || |||||||||||| ||||| Sbjct 459 CGCACGCCGGCGCGGTCGACGATCAGATAGCCCTTCTCGAAGTCGCCGAACGCGATCGGG 400 Query 39392 GTCGAGTTCGCCGCCACATCCGGCATGTCCGGCACCTCGGTAACCGGATAGCCCGCCAGC 39451 | ||| || || ||||| |||||| || | |||||| ||||| ||||| ||| Sbjct 399 CAGGCGTTGGCGGCGACATCGGGCATGGCCTCGATCTCGGTGACCGGGAAGCCCAGCAGG 340 Query 39452 GTCGCCGGCT-GCCCCGCTACGTACGACGGTTGCCAGAGATAGTTCCCTTGGCCGTCCTT 39510 |||||| || |||| ||| | || || | ||||| ||||| ||||| ||||||| Sbjct 339 CTCGCCGACTGGCCCGGCTGC-AGCGCCGCGTTCCAGATGTAGTTGCCTTGCGCGTCCTT 281 Query 39511 CAGCTTCCGCACCTGACGCTG--CGTGTTGCGGTTCATCGCGAAGCGGGCGTT 39561 | ||| |||||| ||||| |||| |||||||||| |||||||| |||| Sbjct 280 GAACTTGCGCACC--GCGCTGACCGTGCGGCGGTTCATCACGAAGCGGCCGTT 230 >seq6602 Length=331455 Score = 138 bits (152), Expect = 3e-28 Identities = 223/310 (72%), Gaps = 8/310 (3%) Strand=Plus/Minus Query 39242 ATCGGCTCCGGATTCAGCAGGCCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTAC 39301 |||| ||| |||| | | |||||| || |||||||| || ||||||||||| || || Sbjct 295120 ATCGCCTCGAAATTCTGTACGCCGCCACCCACGCGCTTGGTGGTGTAGAACAGCACATAG 295061 Query 39302 GGCTTCGCCGTGTACGGATCGCGCAGCACGCGAACCCCGATGCGGTCGATGATCAGAT-A 39360 || || |||| || ||||||||||| | ||| || ||| ||||||||| || |||| | Sbjct 295060 GGTTTGGCCGAATAGGGATCGCGCAGGATGCGCACACCGGTGCGGTCGACGACGAGATAA 295001 Query 39361 CGTCTGCTGGAAGTCGCCGAAGAGAATCGGCGTCG-AGTTCGCCGCCACATCCGGCATGT 39419 | || |||| ||||||||| || ||| | ||| ||||| |||| |||||||| Sbjct 295000 CCGGAGC-GGAAATCGCCGAAGGCGAT-AGCGAAGCTGTTGGCCGCGACATTCGGCATGT 294943 Query 39420 CCGGCACCTCGGTAACCGGATAGCCCGCCAGCGTCGCCGGCTGCCCCGCTACGTACGACG 39479 | | |||| || |||||| ||||| ||||| || ||||| || || || | || Sbjct 294942 CTTCCGCCTCCGTCACCGGAAAGCCCATCAGCGAGGCGGGCTGGCCGGCGGCGGCGGGCG 294883 Query 39480 GTTGCCAGAGAT-AGTTCCCTTGGCCGTCCTTCAGCTTCCGCACCTGACG-CTGCGTGTT 39537 | |||||||| | || || | | |||||| | |||| | | || |||||| || Sbjct 294882 GGTGCCAGAGGTAAGCGCCGGTCG-TGTCCTTGAAGCGGCGCAGC-GCCGCCTGCGTCTT 294825 Query 39538 GCGGTTCATC 39547 |||||||||| Sbjct 294824 GCGGTTCATC 294815 >seq1205 Length=48877 Score = 114 bits (126), Expect = 4e-21 Identities = 197/280 (70%), Gaps = 17/280 (6%) Strand=Plus/Minus Query 3513 TCCGCCGCGACCTTCACCTTCACGCGCGCGTCGTCTTGCC--AATGC-------CCCTTC 3563 || || |||||||||| ||||||||||||||| || || | || ||||| Sbjct 33242 TCGGCGGCGACCTTCATCTTCACGCGCGCGTCTTCCTGGATGACGGCTTCGCTGCCCTTG 33183 Query 3564 ACCTCGTGCGCCTCGAGCTG--GCCGTTCGCGAGCATCACCGTGAAATCGGGCGTGTAGA 3621 || ||| | ||| | || || ||| ||| ||| |||| ||||||| || || Sbjct 33182 ACGTCGATCA--TCGTGATGATGCTGTTGGCGCCCATGACCGCGAAATCGACGGTCAGGA 33125 Query 3622 ACGTGTTGTCGGCGAGACGGAACTTGATGCCCTCGAATCGATACCAGACGATTTCGCCGG 3681 | ||||| ||||| || || | ||||||||||||||| || ||||||| ||| || || | Sbjct 33124 AGGTGTTATCGGCCAGGCGCAGCTTGATGCCCTCGAAACGGTACCAGAGGATATCCCCTG 33065 Query 3682 CCTGC-TTCCGCGCCTCCAGA--TGGTCGGCGTAGCGCTGCTCGGTCTTGTTCATCGCGC 3738 || || | ||| | | | || | ||| || |||||||||| | ||||||| || ||| Sbjct 33064 CCAGCATGCCGGGGCGCAGGACCTCGTCCTCGAAGCGCTGCTCCGACTTGTTCTTCTCGC 33005 Query 3739 CGGCCTTCAGTCGACCGAGCGCCTGCATGCGAGTCTTTGC 3778 | | ||| || || || ||||| || |||| || |||| Sbjct 33004 CCGTCTTGAGGCGGCCCAGCGCGAACAGGCGA-TCCTTGC 32966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143391953258044