Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_007710.1
Length=46643
Score E
Sequences producing significant alignments: (Bits) Value
seq10316 275 2e-69
seq10703 127 6e-25
>seq10316
Length=5217
Score = 275 bits (304), Expect = 2e-69
Identities = 206/242 (85%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 35627 GTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGCAACGGTACC 35686
||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || |||
Sbjct 4753 GTGATCCTGCCGCGCTCGGGGCTGGGCCATCGCCACGGCATCGTGCTCGGCAATGGCACC 4812
Query 35687 GGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCGGCCGC 35746
||||| ||||| || ||||||||||| || || |||||||| |||||| || ||||||
Sbjct 4813 GGCCTGATCGACGCCGATTACCAGGGCCCGCTGCTGATCAGCGTCTGGAACCGTGGCCGC 4872
Query 35747 GAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATCCTGCCGGTCGTG 35806
|||||||||||||||||||||||||| || || ||||||||||||||| ||||| | |
Sbjct 4873 GAGGCCTTCACCATCGAGCCGGGCGATCGCATCGCGCAGCTGGTGATCGTGCCGATTGCC 4932
Query 35807 CGCGTAGGCTTGCGAGTGGTGGACACTTTCGTCGACAGCGCGCGCGGCGCGGGTGGATTC 35866
||||| || ||| |||||||| |||||| |||||||| ||| || |||||||||||
Sbjct 4933 CGCGTCAGCCTGCAGGTGGTGGATACTTTCACCGACAGCGTGCGGGGAACGGGTGGATTC 4992
Query 35867 GG 35868
||
Sbjct 4993 GG 4994
>seq10703
Length=79623
Score = 127 bits (140), Expect = 6e-25
Identities = 230/327 (70%), Gaps = 12/327 (4%)
Strand=Plus/Plus
Query 35487 TGCCGGCCTATGCCACCGAAGCCAGTGCAGGCATGGACCTGCGTGCC-GCACTGGAGGCG 35545
|||| ||||| ||||| | || || ||| |||||||||| ||| ||| | || |||
Sbjct 31184 TGCCCGCCTACGCCACGCCGGGAAGCGCGGGCCTGGACCTGCGCGCCTGCA-TCGATGCG 31242
Query 35546 CCGATGACGTTGCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTG 35605
||| ||||| || |||| ||| | | ||| | |||| ||||| || || | ||
Sbjct 31243 CCGCTGACGCTGGAGCCCGGCCAATGGCAACTGGTGCCCATGGGCATGGCCATGTACCTC 31302
Query 35606 GCCGACCCGCAGCTGTGC-GCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGG 35664
||||| | ||| || || ||||||||||||||||||| | ||||| |||||
Sbjct 31303 AAGGACCC-CGGCTACGCCGCCATGATCCTGCCGCGCTCGGGCATGGGCCACAAGCACGG 31361
Query 35665 CATCGTACTCGGCAAC--GGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTG 35722
|||||| || |||||| ||| |||||| ||||| || |||||||| | | ||
Sbjct 31362 CATCGTGCTGGGCAACCTGGT--CGGCCTGATCGACAGCGACTACCAGGGCCAGCTCATG 31419
Query 35723 ATCAGCACCTGGAATCG--CGGCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTG 35780
||||| ||||||| || ||||| | ||||||||| | |||| ||||| | |
Sbjct 31420 GTCAGCGCCTGGAACCGCTCGGCCAC--GGCCTTCACGCTGCAGCCCATGGACCGCCTGG 31477
Query 35781 CGCAGCTGGTGATCCTGCCGGTCGTGC 35807
| |||||| | ||| |||| || ||||
Sbjct 31478 CCCAGCTGATCATCGTGCCCGTGGTGC 31504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149109330661590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |