Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007710.1 Length=46643 Score E Sequences producing significant alignments: (Bits) Value seq10316 275 2e-69 seq10703 127 6e-25 >seq10316 Length=5217 Score = 275 bits (304), Expect = 2e-69 Identities = 206/242 (85%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 35627 GTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGCAACGGTACC 35686 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || ||| Sbjct 4753 GTGATCCTGCCGCGCTCGGGGCTGGGCCATCGCCACGGCATCGTGCTCGGCAATGGCACC 4812 Query 35687 GGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCGGCCGC 35746 ||||| ||||| || ||||||||||| || || |||||||| |||||| || |||||| Sbjct 4813 GGCCTGATCGACGCCGATTACCAGGGCCCGCTGCTGATCAGCGTCTGGAACCGTGGCCGC 4872 Query 35747 GAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATCCTGCCGGTCGTG 35806 |||||||||||||||||||||||||| || || ||||||||||||||| ||||| | | Sbjct 4873 GAGGCCTTCACCATCGAGCCGGGCGATCGCATCGCGCAGCTGGTGATCGTGCCGATTGCC 4932 Query 35807 CGCGTAGGCTTGCGAGTGGTGGACACTTTCGTCGACAGCGCGCGCGGCGCGGGTGGATTC 35866 ||||| || ||| |||||||| |||||| |||||||| ||| || ||||||||||| Sbjct 4933 CGCGTCAGCCTGCAGGTGGTGGATACTTTCACCGACAGCGTGCGGGGAACGGGTGGATTC 4992 Query 35867 GG 35868 || Sbjct 4993 GG 4994 >seq10703 Length=79623 Score = 127 bits (140), Expect = 6e-25 Identities = 230/327 (70%), Gaps = 12/327 (4%) Strand=Plus/Plus Query 35487 TGCCGGCCTATGCCACCGAAGCCAGTGCAGGCATGGACCTGCGTGCC-GCACTGGAGGCG 35545 |||| ||||| ||||| | || || ||| |||||||||| ||| ||| | || ||| Sbjct 31184 TGCCCGCCTACGCCACGCCGGGAAGCGCGGGCCTGGACCTGCGCGCCTGCA-TCGATGCG 31242 Query 35546 CCGATGACGTTGCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTG 35605 ||| ||||| || |||| ||| | | ||| | |||| ||||| || || | || Sbjct 31243 CCGCTGACGCTGGAGCCCGGCCAATGGCAACTGGTGCCCATGGGCATGGCCATGTACCTC 31302 Query 35606 GCCGACCCGCAGCTGTGC-GCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGG 35664 ||||| | ||| || || ||||||||||||||||||| | ||||| ||||| Sbjct 31303 AAGGACCC-CGGCTACGCCGCCATGATCCTGCCGCGCTCGGGCATGGGCCACAAGCACGG 31361 Query 35665 CATCGTACTCGGCAAC--GGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTG 35722 |||||| || |||||| ||| |||||| ||||| || |||||||| | | || Sbjct 31362 CATCGTGCTGGGCAACCTGGT--CGGCCTGATCGACAGCGACTACCAGGGCCAGCTCATG 31419 Query 35723 ATCAGCACCTGGAATCG--CGGCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTG 35780 ||||| ||||||| || ||||| | ||||||||| | |||| ||||| | | Sbjct 31420 GTCAGCGCCTGGAACCGCTCGGCCAC--GGCCTTCACGCTGCAGCCCATGGACCGCCTGG 31477 Query 35781 CGCAGCTGGTGATCCTGCCGGTCGTGC 35807 | |||||| | ||| |||| || |||| Sbjct 31478 CCCAGCTGATCATCGTGCCCGTGGTGC 31504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149109330661590