Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq9777 257 4e-64 seq11405 129 1e-25 seq7041 116 9e-22 seq1205 111 4e-20 seq8280 87.8 4e-13 seq551 87.8 4e-13 seq7352 84.2 5e-12 >seq9777 Length=39614 Score = 257 bits (284), Expect = 4e-64 Identities = 363/505 (72%), Gaps = 4/505 (1%) Strand=Plus/Plus Query 940 TCGGGTCACGGTATTGGTAAATCCGCATTCATCTCAATGCTGATCAACTGGGGCATGTCC 999 ||||| ||||| || || || ||||| | | | ||||||||||| |||| | | | Sbjct 25523 TCGGGCCACGGCATCGGCAAGTCCGCGCTGGTGGCGATGCTGATCAAGTGGGCCTTCGAC 25582 Query 1000 ACTTGCGAGGATTGTAAGGTCGTGGTGACCGCCAACACCGACAACCAGCTACGAACGAAG 1059 || | ||| || | ||| || || ||||||||||||| |||||| || |||||| Sbjct 25583 ACGTTCGAAGACACGCGCGGCGTCGTCACAGCCAACACCGACATCCAGCTGCGCACGAAG 25642 Query 1060 ACCTGGCCGGAAATTATCAAGTGGTC-GAACCTTGCTATCACGAAAGACTGGTTTAC-CT 1117 |||||| ||||| | |||||| ||| || |||| || |||||| || || Sbjct 25643 ACCTGGGCGGAACTGTCGAAGTGGCATGAAATCAGCC-TCACCAAGGACTGGGCCACGCT 25701 Query 1118 GTACCGCTACCGCGATGTACAGCAATGACCCTGGGCACGACAAGCGGTGGCGAGCTGACG 1177 | ||||| || ||| || |||||| | ||| || ||||||||| ||||| |||| Sbjct 25702 G-ACCGCCACGGCGCTGATCAGCAACGCCCCGGGCCACGACAAGACCTGGCGCATCGACG 25760 Query 1178 CAATCCCCTGGTCTGAGCACAACACTGAGGCATTCGCCGGACTACACAACGAGCGCAAAC 1237 | | || ||||| || ||||||| ||||| ||||| || || ||||||||| || | Sbjct 25761 CGGTGCCGTGGTCGCAGAACAACACCGAGGCGTTCGCAGGCCTGCACAACGAGGGCCGGC 25820 Query 1238 GCATCATCGTGGTATTCGACGAAGCATCCAACATTGCCGATCTGGTGTGGGAGGTAGCAG 1297 ||||| | |||| |||||||| || || ||| ||||| ||||||||| || || | Sbjct 25821 GCATCCTGCTGGTGTTCGACGAGGCTTCGGCCATCGCCGACAAGGTGTGGGAAGTGGCCG 25880 Query 1298 AGGGTGCGCTGACGGACGAAGACACTGAGATTATCTGGGTGGCATTCGGAAACCCTACAC 1357 ||||||||||||| ||| | | ||| ||||| ||||||| || ||||| ||| | || | Sbjct 25881 AGGGTGCGCTGACCGACCAGGGCACCGAGATCATCTGGGCCGCGTTCGGCAACACCACCC 25940 Query 1358 GTAACACCGGGCGTTTCCGCGAATGTTTCCGCAAATATAAACACCGCTGGAAAACTGCGC 1417 | |||||||| || |||||||| || |||||| | || | | ||| | || | || Sbjct 25941 GCAACACCGGCCGGTTCCGCGAGTGCTTCCGCCGGTTCAAGGCCAGTTGGGACACCGAGC 26000 Query 1418 AGATTGACAGCCGGACGGTGGAAGG 1442 |||| |||||||| || || || || Sbjct 26001 AGATCGACAGCCGCACCGTTGAGGG 26025 >seq11405 Length=110570 Score = 129 bits (142), Expect = 1e-25 Identities = 298/448 (67%), Gaps = 11/448 (2%) Strand=Plus/Plus Query 30026 TCCTGTAATTCGTCTGGTGTGTAGACGCCCATGATTACGTCAGGACAGTGCAAGCGAGAC 30085 ||||| | ||||| | | || ||||||| ||| ||||| || | || || | | Sbjct 79568 TCCTGCAGCTCGTCGGCGGAATACACGCCCAGGATCACGTCGGGGGCGAACAGCCGGGCC 79627 Query 30086 CAGCGTTTTGTCGCAAGGTATGCGAGTTGTTGTTTCGGATCACTGGCCCAAAGTGTGGAG 30145 ||||| || || |||||||| || || || ||||| || ||||| || ||||| Sbjct 79628 CAGCGCTTCTGGGCGAGGTATGCCAGCTGCTGCTTCGGGTCGTCAGCCCACAGGGTGGAA 79687 Query 30146 TTTCTTACCTGTGCTTGAGACAGCATTAACTCAAGCACTCGAGGTTGATCCTCGCCCTTC 30205 || | | || || | ||||| | ||| ||| || || | | |||||| || Sbjct 79688 TTGCGAGTGCGGGCCTGTGCCAGCAGCAGCTCCAGCGTGCGTGGATTGGCTTCGCCCCTC 79747 Query 30206 ATGGTTGCCCATACGCGAACACCGCAGCCTTCTTCGTCTTTTAGAGTCCAGCCTGGTGCG 30265 | ||||||||| ||||| |||||||| ||||| ||||| || ||||||| || || Sbjct 79748 AGGGTTGCCCAGACGCGGACACCGCAACCTTCCTCGTCGGCCAGGTTCCAGCCCGGAACG 79807 Query 30266 ATATATGGATTGCCGTTTTTGGATGTTTTCTCAACAAACTTACCGATCACGCGTTCCCAC 30325 ||| | ||| || | | || ||||| |||||||| ||||| Sbjct 79808 CGGTAT---TCGCCCTTGTCCCCCTTCTTGATGGAGAACTTGCCGATCACCTTCTCCCAG 79864 Query 30326 GGCCCGAACCACTCGTAGTTGATGCGATCTTTTGTTGGCGACATCGTTGA----GATAAC 30381 || ||| |||| ||| | | || ||| || | || | | || || ||| || Sbjct 79865 GGTCCGTACCAGTCGAACTGGAAGCGGTC----GGTGACCAGCCCGCTGTTGTTGATTAC 79920 Query 30382 TGCGTTTACTAATTGGGCTTCATAACCTAGCGTGCCGTTCACAACATGGGTTTTCTGAGC 30441 ||| || || ||||| ||||| || | |||||||||||| | ||||| ||||| || Sbjct 79921 GGCGGCCACCAACTGGGCCTCATAGCCCAACGTGCCGTTCACCAGGTGGGTCTTCTGGGC 79980 Query 30442 CACGGCAAACGGGTTCATTCCCCACTGC 30469 |||||| || |||||||| ||||||||| Sbjct 79981 CACGGCGAAGGGGTTCATGCCCCACTGC 80008 >seq7041 Length=191181 Score = 116 bits (128), Expect = 9e-22 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 2303 AGCAAGTAACCTTCAAGCATCCAGATTTTGTTTGCAGCATTCTGCCGGGCAATCTTCCGA 2362 |||| ||| || |||||| |||||| ||||| ||||||| ||||| || | || Sbjct 26903 AGCAGGTATCCCTCAAGCTGCCAGATCTTGTTGCGAGCATTCGCGCGGGCGATATCGCGC 26962 Query 2363 CCAATTTCCGCATCAAAGTTTTCCGGGCTTGCACAGGCGCTCTCTCCGGTGACGGTGAAG 2422 || || ||||| |||||||||||||| || ||||||||||| || || || ||||| Sbjct 26963 CCGATCCTGGCATCGAAGTTTTCCGGGCTGGCGCAGGCGCTCTCGCCAGTCACCGTGAAA 27022 Query 2423 CCGTTGCGCAGCACCAGAACGCAGAACGTCAG 2454 ||||| |||| || |||||||||| |||||| Sbjct 27023 CCGTTCTGCAGGACGAGAACGCAGACCGTCAG 27054 >seq1205 Length=48877 Score = 111 bits (122), Expect = 4e-20 Identities = 238/352 (68%), Gaps = 4/352 (1%) Strand=Plus/Plus Query 1181 TCCCCTGGTCTGAGCACAACACTGAGGCATTCGCCGGACTACACAACGAGCGCAAACGCA 1240 || ||||||| | | ||||||| ||||| |||||||| || || || || |||| |||| Sbjct 36092 TCACCTGGTCGGCGAACAACACCGAGGCGTTCGCCGGCCTGCATAATCAGGGCAAGCGCA 36151 Query 1241 TCATCGTGGTATTCGACGAAGCATCCAACATTGCCGATCTGGTGTGGGAGGTAGCAGAGG 1300 || | || | |||||||| || || ||| | | |||||||||||| || | Sbjct 36152 TCGTGCTGATCTTCGACGAGGCGTCAGGCATCATCAACAAGGTGTGGGAGGTCGCGCTCG 36211 Query 1301 GTGCGCTGACGGACGAAGACACTGAGATTATCTGGGTGGCATTCGGAAACCCTACACGTA 1360 | ||||| || ||||| || || ||||| | ||| | || ||||| || || |||| | Sbjct 36212 GCGCGCTCACCGACGAGGATACCGAGATCCTGTGGCTCGCCTTCGGCAATCCCACACTCA 36271 Query 1361 ACACCGGGCGTTTCCGCGAATGTTTCCGCAAATATAAACACCGCTGGAAAACTGCGCAGA 1420 ||||||| |||||||| || | |||| || ||||| || ||||| Sbjct 36272 ACACCGGCTCGTTCCGCGACTGCTATGGCAAGAGCCGGAACATGTGGAAGACGCGGCAGA 36331 Query 1421 TTGACAGCCGGACGGTGGAAGGCACTAACAA-ACAGCAGTTGCAGAAATGGGTTGATGA- 1478 | || || || | || || ||||| ||||| | | | | || ||| | | | Sbjct 36332 TCGATAGTCGCAATGTCGAGGGCACCAACAAGAAATATCTCGACGAGCTGG--TCACCAC 36389 Query 1479 CTACGGGGAAGGCAGCGACTTCGTTAAAATCCGTGTGCGCGGCATATTCCCG 1530 |||||| | | |||||| |||| || | || ||||||||||| |||||| Sbjct 36390 CTACGGCGCGGACAGCGATATCGTGAAGGTTCGCGTGCGCGGCATGTTCCCG 36441 >seq8280 Length=144189 Score = 87.8 bits (96), Expect = 4e-13 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2853 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 2912 ||||| | | ||||||| |||||||||||||| ||||||||||||||| |||||| ||| Sbjct 25970 TGGCGCGCCCTGCAGGACTCGAACCTGCGACCGTCCGCTTAGAAGGCGGATGCTCTATCC 26029 Query 2913 AACTGAGCTAA 2923 | ||||||||| Sbjct 26030 AGCTGAGCTAA 26040 >seq551 Length=68878 Score = 87.8 bits (96), Expect = 4e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2865 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 2922 ||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||| Sbjct 2847 CAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATCCAACTGAGCTA 2904 >seq7352 Length=278960 Score = 84.2 bits (92), Expect = 5e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2853 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 2912 ||||| | | |||||||||||||||||||||| ||||||||||||| |||||| ||| Sbjct 263155 TGGCGCGCCCTGCAGGATTCGAACCTGCGACCGCTCGCTTAGAAGGCGAGTGCTCTATCC 263214 Query 2913 AACTGAGCTAA 2923 | ||||||||| Sbjct 263215 AGCTGAGCTAA 263225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124988844794028