Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007805.1 Length=39199 Score E Sequences producing significant alignments: (Bits) Value seq11405 93.3 1e-14 >seq11405 Length=110570 Score = 93.3 bits (102), Expect = 1e-14 Identities = 95/123 (77%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 24780 TAGCTGCCGGTGCGGCGGATGCTGGGCAGTACGTCGTGGGTCACCCAGCGCTTGAACGGC 24839 ||||| || ||||| ||||| ||||| || ||| |||||||||||||||||| || Sbjct 108730 TAGCTTCCCGTGCGCCGGATCGATGGCAGAACCTCGCTGGTCACCCAGCGCTTGAAGCGC 108789 Query 24840 TTGGCCTCGGGCTTGTTGCTGCCGATGATGGACGAGTACAGCCCGGACTCGTTAATGGTG 24899 |||||||| | |||| |||| |||| ||| | ||||| ||| |||||||| | ||| Sbjct 108790 TTGGCCTCAGCCTTGGTGCTTCCGAAGATCAGGGCGTACATCCCAGACTCGTTGA-CGTG 108848 Query 24900 GTT 24902 ||| Sbjct 108849 GTT 108851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125292790431038