Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007810.1 Length=66015 Score E Sequences producing significant alignments: (Bits) Value seq6714 95.1 5e-15 >seq6714 Length=1758414 Score = 95.1 bits (104), Expect = 5e-15 Identities = 208/306 (68%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 1419 TCACGAAGAACTCGATCAAGCACAAGAGGACCGGATCAGAATTCCTATTCTATGGGATCG 1478 ||| ||||| ||||| |||||| |||||| || || ||| | ||||| ||||||| Sbjct 814462 TCATGAAGACGACGATCGTCCACAAGGCGACCGGTTCCGAGTTCATCTTCTACGGGATCG 814403 Query 1479 CCCGTAACCTGTCGGAAATCAAGTCTACCGAAGGCATCGACATTCTCTGGCTTGAGGAAG 1538 || ||||| || ||||| || | ||||||||| || ||| | ||||| | Sbjct 814402 AGCGAAACCTCGACGACATCAAAGGCACGTCGGACATCGACATCCTTTGGGTGGAGGAGG 814343 Query 1539 CTCACTACCTGACCCAGGAGCAGTGGGAAGTCATCGAGCCGACCATCCGGAAAGAGAACT 1598 | | | || || | |||||||||| || |||| |||||| ||||| |||||| || Sbjct 814342 CGGAGAAACTTACGGAAGAGCAGTGGGTCGTTATCGCGCCGACGATCCGCAAAGAGGAC- 814284 Query 1599 CAGAAATCTGGATCAT---CTTCAATCCGAACGAAGTGACAGACTTCGTGTATCAGAACT 1655 || || |||| | |||||||||||| || || |||| |||| |||| | Sbjct 814283 -AGCC-TCACGATCCTGCTCTTCAATCCGAAATTCGTTACGGACTATGTGTGGAAGAATT 814226 Query 1656 TCGTGGTGAAGC-CACCCAAAGACGCCTTCGTCAAGATGATCAACTGGAACGAAAATCCG 1714 |||| || |||| | ||| | || | | ||| | | |||| ||| ||||| ||| Sbjct 814225 TCGTTGT-AAGCACCCCCGAGCACTGCCTAGTCCACAAGATCGACTACTCGGAAAACCCG 814167 Query 1715 TTTCTC 1720 || ||| Sbjct 814166 TTCCTC 814161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 211084452229224