Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_007967.1 Length=38194 Score E Sequences producing significant alignments: (Bits) Value seq6198 89.7 1e-13 >seq6198 Length=222549 Score = 89.7 bits (98), Expect = 1e-13 Identities = 126/170 (74%), Gaps = 13/170 (8%) Strand=Plus/Minus Query 20078 CGCCTCCCGCGGCAAGCAGCGCCGG-GCCGAGCCGATCGCCGCCCTGTACGAGCAGCACC 20136 |||||| |||||| | ||||| | ||||||||| | || ||||| ||||||||| || Sbjct 2098 CGCCTCGGTCGGCAAAC-GCGCCCGCGCCGAGCCGGTGGCGGCCCTCTACGAGCAGGGCC 2040 Query 20137 GAATCCACCACGTCGGGTCGTTCCCCGAGCTGGAGGACGA---GATGACCAGCTGGGTCC 20193 | | |||| ||| | ||||||| ||||||||| || |||| || ||||| | Sbjct 2039 GCGTATCCCACTGCGGCGCCTTCCCCGCGCTGGAGGAGGAACTGATGGCC--CTGGGCTC 1982 Query 20194 CGGGCGAGCCCGG----CAGCCCGGACCGCATGGACGCCCTGGTCTGGGC 20239 ||| ||| || || |||||| |||||| ||||||||||||||||| Sbjct 1981 CGG-CGA-CCTGGAGCACAGCCCCGACCGCGCCGACGCCCTGGTCTGGGC 1934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122077365534248