Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq899 100 2e-16
seq12661 96.9 3e-15
>seq899
Length=2520420
Score = 100 bits (110), Expect = 2e-16
Identities = 164/234 (70%), Gaps = 12/234 (5%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| |||| || | || |||| ||||| |||||||| || || ||||||||||| |
Sbjct 2265085 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 2265144
Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823
|| ||| |||||| |||| ||||| || ||| | || |||| ||| |||||
Sbjct 2265145 CAGGGT----GCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTG 2265200
Query 16824 CAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGG 16881
|| | |||||||||||| || || || ||| || | | | ||||| | |||
Sbjct 2265201 GGGGGATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGG 2265258
Query 16882 CTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||| ||||||||| || || |||| || || || || ||||||||
Sbjct 2265259 CTCCACCTCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312
Score = 98.7 bits (108), Expect = 8e-16
Identities = 152/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| |||||||| || || ||||||||||| | || ||| | ||
Sbjct 2264416 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 2264475
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| ||||| || ||| | || |||| ||| ||||| || | ||||||||||||
Sbjct 2264476 TTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 2264535
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || ||| || | | | ||||| | ||||||| |||| |||||||
Sbjct 2264536 TTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 2264593
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || || |||| || || || || ||||||||
Sbjct 2264594 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628
Score = 98.7 bits (108), Expect = 8e-16
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| |||| || | || |||| ||||| |||||||| || || ||||||||||| |
Sbjct 2264629 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 2264688
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| ||| | || |||| ||||| || ||| | || |||| ||| ||||| ||
Sbjct 2264689 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 2264748
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| |||||||||||| || || || ||| || | | | ||||| | |||||||
Sbjct 2264749 GATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCC 2264806
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||||||| || || |||| || || || || ||||||||
Sbjct 2264807 ACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856
Score = 98.7 bits (108), Expect = 8e-16
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| |||| || | || |||| ||||| |||||||| || || ||||||||||| |
Sbjct 2264857 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 2264916
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| ||| | || |||| ||||| || ||| | || |||| ||| ||||| ||
Sbjct 2264917 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 2264976
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| |||||||||||| || || || ||| || | | | ||||| | |||||||
Sbjct 2264977 GATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCC 2265034
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||||||| || || |||| || || || || ||||||||
Sbjct 2265035 ACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| |||| || | || |||| ||||| |||||||| || || ||||||||||| |
Sbjct 2265313 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 2265372
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| ||| | || |||| ||||| || ||| | || | || ||||||||| ||
Sbjct 2265373 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGG 2265432
Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887
| ||| ||||| || || | | ||| || | | | ||||| | ||||||
Sbjct 2265433 GATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCTCCAC 2265492
Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|||| || |||||||| || || || || || ||||| |||||||||
Sbjct 2265493 CTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 2265541
>seq12661
Length=3984070
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| |||||||| || || || |||||||| | || || | | |||
Sbjct 2676666 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATCC 2676607
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| |||||||||||| | || || | ||| ||||| || | |||||| |||||
Sbjct 2676606 TCCAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 2676547
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | |||||| | |||||| || | ||||||||
Sbjct 2676546 TGGATTTTGGCT--TTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGG 2676489
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| || || ||||| ||||||||
Sbjct 2676488 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405013653566410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |