Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_008208.1 Length=161475 Score E Sequences producing significant alignments: (Bits) Value seq9665 84.2 2e-11 >seq9665 Length=136677 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 64410 CGGGATCGAACCGATGACATTCTGCTTGGAAGGCAGAAGCTCTACCAACTGAGCTA 64465 ||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| Sbjct 97273 CGGGATCGAACCGCCGACATTCTGCTTGTAAGGCAGACGCTCTACCAACTGAGCTA 97328 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 64410 CGGGATCGAACCGATGACATTCTGCTTGGAAGGCAGAAGCTCTACCAACTGAGCTA 64465 ||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| Sbjct 98617 CGGGATCGAACCGCCGACATTCTGCTTGTAAGGCAGACGCTCTACCAACTGAGCTA 98672 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 64410 CGGGATCGAACCGATGACATTCTGCTTGGAAGGCAGAAGCTCTACCAACTGAGCTA 64465 ||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| Sbjct 99455 CGGGATCGAACCGCCGACATTCTGCTTGTAAGGCAGACGCTCTACCAACTGAGCTA 99510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516494758013400